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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                            <---------AHL20(2)         ------>ZmHOX2a(1)
   <---------ARR11(3)      <---------AHL20(2)          ================HOX2a_HOX2a   <---------ICU4
  <---------CCA1(2)        --------->AHL20(2)       ===================HOX2a_HOX2a  <---------YAB1
<---------DAG2      --------->AHL20(2)    <---------ANAC58      ------>ZmHOX2a(2)  --------->TOE2(3)
-------WRKY18(1)    <---------AHL20(2)    <---------ANAC58    --------->ARR11(3)  --------->YAB1
----ANAC58--------->ANAC46 --------->AHL20(1)       ------>ZmHOX2a(1)          --------->YAB1<------
----ANAC58--------->ANAC55(2)             <---------AtLEC2<----------DOF2 --------->LBD16   <-------
 
tgaccttatcttcacataacaaattaaaaatttaatactgattttgcatgtcttcctcctactttgatctctatttccacaaaaatcatcaatgctcgtt  900500
                                                                   <---------WRKY38(1)
                                                                   <---------WRKY12         --------
                                                                  <<<<<<<<<<WRKY38    --------->YAB1
                                                                  <<<<<<<<<<WRKY26    --------->AHL20(2)
                                                       <-----------GT1             --------->YAB1
--------->KAN4(1)                               ----------->GT1   <<<<<<<<<<WRKY43<---------YAB1
-GAMYB    <---------KAN4(2)                 --------->DAG2<----------DOF2       --------->YAB1
--MYB46(3)---------->TaMYB80               ---------->DOF2<---------DAG2    --------->At4g35610
 
ggaatattgtcagaatatactaatgctatataagaaaacaaatacaaaaagaggttttatacttttttggtcaaatgtcatcttcataataaaaaaaaag  900600
                               --------->TOE1(1)
                              <---------LBD16
                          <---------ALFIN1
                        <-----------GT1
                      <---------MYB52(2)
                     --------->ANAC58
                     --------->ANAC55(2)
    ------>ZmHOX2a(2)----------->GT1                        ----------->GT1       <------MYB46(1)
   <------ZmHOX2a(2) --------->ANAC55(1)                   ------>ZmHOX2a(1)      <------MYB83
  <---------ARR11(3) <---------ANAC55(2)           <---------ARR11(3)             <---------MYB46(3)
  --------->ARR11(3) --------->ANAC46          --------->YAB1                --------->DAG2    -----
-->DOF2              --------->ANAC58  ---------->DOF2 ------>ZmHOX2a(1)    ---------->DOF2   ------
 
attacgatcttatcccgttctaacaagtaacacctcggaaaaaaaagaaatcaaaatccttcctagtaaaaaaaaaaaaaaaagttggtttcagacagaa  900700
                                 <---------TOE1(2)
                                 <---------TOE2(2)
      --------->YAB1        <-----------TGA1
    --------->GLK1(2)       <-----------HVH21                        <------ZmHOX2a(1)
---->DAG2           <---------YAB1                          ---------->DOF2      ---------->DOF2   <
---->DOF2           --------->ICU4                  --------->AHL20(2)        <------ZmHOX2a(1) <---
 
agtgaagaatcaagacaagtgtgatgattttcgtcataggttgaaagaaaacagattaaaaaaaaaagaagaggacttacaggagaaagaagaaggaaga  900800
                        --------->ATHB12
                        -------->HAHB4
            --------->ETT(2)        <---------ANAC58
         <---------REM1(1)          <---------ANAC58
      <-----------RAV1(1)           <---------ANAC46
  --------->ATHB12     <---------YAB1          <---------AHL20(2)                           --------
-----------GT1         <---------ATHB12--------->ZAT18               *TSS   <---------YAB1<---------TOE2(3)
------REM1(1)          --------->ICU4  <---------ZAT18             ------>ZmHOX2a(2)     ---------->DOF2
 
tgtaacgatttgttgtagactgggaaatgattcagacttgtgtgtgctatttattccatggattttttgatcgcctactatgaaggcgatgttaaagatg  900900
                                                                          XXXXXXXXXXXXXXXXXXXX>MIR403
 <---------WRKY18(1)                                                    --------->AHL20(2)
--------->WRKY45                                                 ---------->DOF2    --------->ANAC46
--------->WRKY38(1)                                            --------->YAB1       --------->ANAC58
--------->WRKY12                                          --------->AHL20(2)        --------->ANAC58
->YAB1          ---------->DOF2                 ----------->RAV1(1)   <----------DOF2        <------
 
atgttgaccaagttttgatcaaagtcgaatacagagagactaaatatacaacaacaaaaaaaaaaatcaaaagctttaaattcacacacacaaatttcga  901000
                                                                                --------->ARR14(2)
                                                                                <-----------GT1
                                                                                <---------ARR14(2)
                                                                           <------------CBF
                                                                         <---------YAB1       ------
                                                         <------ZmHOX2a(1)--------->ATHB51    ------
                              <---------GLK1(1) --------->ANAC46  <---------At4g35610       <-------
---YAB1             <---------ZAT6 --------->ZAT6     <------ZmHOX2a(1)  --------->ICU4   <---------
 
tagtagctatggatttaagacaagtgtaagaagaaatcacactagttttcaacgtaaggaggatgatgaagatgacattattgtatccacatttgtcacc  901100
                                                                                          xxxxxxxxxx
                                                                                         <--------P
                                                                                         <---------MYB52(1)
                                                                                  ---------->DOF2
                                                                             xxxxxxxxxxxxxxxxxxxxxxx
                            <---------ARR11(3)                              xxxxxxxxxxxxxxxxxxxxxxxx
                          <---------AHL20(2)                               xxxxxxxxxxxxxxx>smallRNA(si3)
                         --------->AHL20(2)                                xxxxxxxxxxxxxxxx>smallRNA(fl3)
                        <---------YAB1                  --------->ANAC58   *TSS   <---------ZAT14  <
                     <---------AHL20(2)                 ----------->GT1    xxxxxxxxxxxxxxx>smallRNA(le3)
                     <---------YAB1      --------->AHL20(2)              <---------MYB46(3)       <-
--->ANAC58          <---------AHL20(1)   <---------AHL20(2)     --------->ZAT6  xxxxxxxxxxxxxxxxxxxx
--->ANAC58       --------->YAB1   ----------->GT1       --------->ANAC58--------->ALFIN1--------->At5g28300
----GT1         <---------YAB1    <---------MYB46(3)  ---------->DOF2--------->DAG2    <---------MYB46(3)
--HVH21       --------->YAB1--------->ARR11(3)   --------->MYB52(1) ---------->DOF2   <---------ANAC46
 
cattttttggaaacagatgataatattattaaatctttggttaattaaatactaagggaaagaaataacacaaaagtggttgtagtatagcggttagtat  901200
                                            <----------DOF2
                                            <---------DAG2
                                         <---------ALFIN1
           --------->ALFIN1            --------->RAP2.6(2)
         <---------ANAC58              ----------->RAV1(1)
         <---------ANAC58        --------->LBD16
         xxxxxxxxxxxxxxxx>smallRNA(s)  <---------ALFIN1
         <---------ANAC46        --------->ANAC46                                --------->MYB111(1)
     <---------RAP2.6(2)        --------->ANAC46                                 ----------->ARR10
   xxxxxxxxxxxxxxx>smallRNA(le3)--------->LBD16                                  --------->MYB52(2)
 ------->MYC3               --------->ARR14(2)                                  <--------P
 <-------MYC3        ------>NtERF2   <------NtERF2                        <-----------RAV1(2)
--------->O2        --------->LBD16  --------->At4g35610                 <---------ZAT2
<---------O2  <---------PCF2<---------ARR14(2)                           --------->ZAT2
xxxxx>smallRNA(fl3)<---------LBD16  --------->RAP2.6(2)                  <---------At4g35610
xxx>smallRNA(fl3) <---------LBD16------>NtERF2                         <---------HSFB2a(2)
xx>smallRNA(se3)--------->ARR14(2)<------NtERF2                        --------->HSFB2a(2)        --
---------TOE1(2)<---------ARR14(2)--------->ZAT2                <---------AHL20(2)<---------HSFC1(2)
--------ALFIN1----------->HVH21 <---------LBD16             <----------DOF2     ====================
xx>smallRNA(fl3)--------->PCF5 <---------LBD16     <-----------GT1    ----------------->AGL1   -----
 
cccacgttgtggccgtggggacccgggctcgaatcccggcagccacactttttgttacctcttcttttttatttccagcaggggtagtttcgacattaca  901300
                 ------>ZmHOX2a(2)
               <---------ARR11(3)
               --------->ARR14(2)
               <---------ARR14(2)
         <---------ICU4
         --------->ATHB12
         <--------HAHB4
        <---------YAB1
        --------->ICU4
       <---------ARR11(3)
    <-------MYC3<------ZmHOX2a(2)
    ------->MYC3--------->CCA1(2)
   <---------TGA1a
   <---------ANAC55(2)
   --------->ANAC55(2)
   --------->TGA1a                      --------->LBD16            ------>NtERF2
   --------->O2--------->ARR11(3)       ------>NtERF2              --------->LBD16      --------->MYB46(3)
   --------->ANAC46                    --------->ANAC58           --------->ANAC46      --------->REM1(1)
   <---------ANAC46       <-------TEIL --------->ANAC58          <---------LBD16       *TSS   <-----
   <---------O2<---------AGP1          --------->ANAC46     <---------DAG2          <---------At4g35610
------->YAB1   --------->AGP1         <---------LBD16       <----------DOF2         --------->At4g35610
=============MYC_MYB     <---------MYB52(1)              <-----------GT1        <-----------TGA1  <-
---->TOE2(3) ----------->ARR10  <-----------GT1        --------->YAB1           <-----------HVH21<--
 
ttaatcacgtgatcattagatctggaccgttcattttactccccgccatttctctctataatacttttcccgcctaaactcatcgtcatctacaaccctt  901400
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AGI:  At4g02050.1   
Description:  sugar transporter, putative. Identical to Sugar transport protein 7 (STP7) [Arabidopsis Thaliana] (GB:O04249;GB:O04262;GB:O81705); similar to MSS1 (SUGAR TRANSPORT PROTEIN 13), carbohydrate transmembrane transporter/ hexose:hydrogen symporter/ high-affinity hydrogen:glucose symporter/ sugar:hydrogen ion symporter [Arabidopsis thaliana] (TAIR:AT5G26340.1); similar to hexose transporter 7 [Vitis vinifera] (GB:AAX47308.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67722.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83402.1); contains InterPro domain General substrate transporter; (InterPro:IPR005828); contains Int
Range:  from: 898307    to: 900870    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g02055.1   
Description:  pre-tRNA. tRNA-His (anticodon: GTG)
Range:  from: 901176    to: 901247    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At4g02060.1   
Description:  PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase. Identical to Protein PROLIFERA (PRL) [Arabidopsis Thaliana] (GB:P43299;GB:O04721); similar to DNA replication licensing factor, putative [Arabidopsis thaliana] (TAIR:AT5G46280.1); similar to mini-chromosome maintenance 7 [Pisum sativum] (GB:AAQ72567.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40111.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61585.1); contains InterPro domain MCM protein 7; (InterPro:IPR008050); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain MCM; (InterPro:IPR001208); contains Inter
Range:  from: 901388    to: 905590    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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