Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             ----------->GT1        --------->ATHB12                                                          <----------DOF2  --       <---------YAB1                                                 ---------->DOF2              <-       --------->ICU4        --------->DAG2  <---------------------WRI1          <---------------AGL15     <---------At4g35610    ---------->DOF2  <---------At4g35610 ----------->GT1 --------------->AGL15     --------->YAB1   ---------->DOF2   <----------DOF2        ---------->DOF2<-----------GT1     --- --------DOF2    ---------->DOF2 <----------DOF2        ---------->DOF2--------->DAG2           -----   ctttctctgatgattgtaaaaaagaaaagaaaaagcttttagctttaagcagagattacaaagacaaaagtataaagttgatacctttcttagaaacacc  690000                                                                                                   <-                                                                                <---------WOX13(1) --                                                                             <---------TOE2(3)     --                                                                         <-------GAMYB             --                                                                         <---------At4g35610       --                                                                         --------->At4g35610     <---                          ------>ZmHOX2a(1)                             <---------MYB46(3)  ------>ZmHOX2a(2) ------->AtMYB61     --------->GLK1(1)               <----------DOF2 --------->GLK1(2)    --------->ARR11(3) --------ALFIN1      <---------GLK1(1)        --------->DAG2      <---------ANAC46        <---------ARR14(2) ------>MYB46(3) <------ZmHOX2a(1)           ---------->DOF2      <---------ANAC58        <---------AGP1 ---->AtMYB61   ----------->GT1         ---------->DOF2           <---------ANAC58        --------->ARR14(2)   accatcgcctaagtgataaggagaattcctccaaaacttattgaaagtaaagtagctttgaactaattgcgagtctgttgagattgattttggatctggt  690100                                              --------->DREB2C(2)                                              --------->RRTF1(3)                                              --------->RAP2.6(2)                                              --------->RAP2.3(3)                                              --------->DEAR3(1)                                              --------->ANAC46                                              <---------ATERF1(2)                                              --------->ATERF1(2)                                              --------->RAP2.3(2)                                              --------->RRTF1(2)                                             --------->ORA47(2)         --------->LBD16                     --------->ERF1        <---------LBD16                      --------->RAP2.3(1)                   --------->ANAC46       <---------LBD16                      <---------ATERF1(1)     ------>ZmHOX2a(1) --------ANAC55(2)                      <---------ICU4              <---------LBD16--------->ANAC58 --------->GT1                  <---------ANAC58                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------->ANAC58                 <---------ANAC58<------NtERF2 <<<<<<<<<MYB2        --------->ANAC58 ------->ANAC58             <-----------RAV1(2)------>NtERF2 <------------------------ANAC81 ------->ANAC55(2)     --------->DAG2   --------->ATHB51<----------DOF2      <----------DOF2 ------DOF5.7(2)     ---------->DOF2   --------->ICU4  <---------DAG2  <---------ATERF1(1)          <   aacgtaatttcagggaaaatcacaaaaggctcaggcttgccataatcgccgccatagccttttggttttcctcgggctcctttccaagacatggacacaa  690200                     <---------ANAC46                    --------->ATERF1(1)                    <------NtERF2                   <---------ERF1                   ------>NtERF2                   <---------RAP2.3(1)                  <---------RAP2.3(2)                  <---------RAP2.3(3)                  <---------DREB2C(2)                  <---------RRTF1(3)                  <---------RRTF1(2)                  <---------ATERF1(2)                  <---------DEAR3(1)                                 <---------HSFC1(2)                  <---------RAP2.6(2)                                --------->HSFC1(2)                  <---------ANAC46                                   --------->HSFB2a(1)                  --------->ATERF1(2)      --------->TOE1(2)         --------->DEAR3(2)                 <---------ABI4(1)       --------->GLK1(2)         --------->MYB52(1)                 --------->ATERF1(1)    --------->GLK1(1)        <---------MYB52(2)              <-----------HVH21         <---------GLK1(1)      --------->MYB52(1)             <-----------RAV1(1)    --------->YAB1        ---------->DOF2       --------->HSFB2a(2) <------ZmHOX2a(1)           <------ZmHOX2a(1)      <---------GLK1(1)   --- -----------GT1--------->ALFIN1  --------->YAB1       <----------ID1------->TEIL            <--------   attcaccttcgaaaactgtggcggcgagaggagaagaataagaaatctgggataagaggaaaaagaaacgaaccgtcttgaaatcagttcgattacgatg  690300                                                                                       =============HOX2a_HOX2a                                                                                      <---------At4g35610                                                                                      --------->At4g35610                                                                        --------->HSFC1(2)   <------ZmHOX2a(1)                                                                        <---------HSFC1(2)<---------AtLEC2                                                                  --------->LBD16    ------->TEIL                                                                 <---------ANAC46    --------->ARR14(2)                                                               <-------TEIL          <---------ARR14(2)                     --------->ARR14(2)                       <-----------HVH21      <---------AGP1                     <---------ARR14(2)                    <---------TOE2(3)         --------->ARR11(3) -------->GT1       <------ZmHOX2a(1)              <-----------------AGL3  <-------TEIL------>ZmHOX2a(2) -YAB1        ------->TEIL                       ----------->GT1<-----------RAV1(2)  <---------ARR11(3)   gagttattcagagacgaatcgaggatttagaagtgaacatcgaaattcgaatagctaaattagggttcaggggaagtttcatacatggatctgcaggacc  690400                                    ----------->GT1                                    <---------ANAC55(2)                                    <---------ANAC46                                    <---------ANAC58                                 <---------GLK1(1)                                 --------->GLK1(1)                                <---------ARR14(2)                                --------->ARR14(2)                             <---------ANAC58                             <---------ANAC58                             <---------ANAC46                            <---------LBD16                          --------->ALFIN1        <----------DOF2                      --------->ZAT14            --------->TOE2(3)           --------->MYB52(1)                      <---------ZAT14    --------->ICU4          <---------ANAC46               <----                <----------DOF2<------NtERF2  <-----------GT1    <---------ANAC58               -----               *TSS---------->DOF2  <---------ANAC58             <---------ANAC58 <---------GLK1(2)   aagaaggaagattacagtctttagagcagtggcggatttcgtaaatattaacctttagatgggtatttcttgaaaaaaaaaacagattagtaagcgcaaa  690500                                                       <------MYB83                                                       <------MYB46(1)                                                      <---------MYB46(3)  --------->PCF2                                                     <---------ANAC46     <---------PCF2                            --------->MYB52(1)    ==========================RAV--------->At4g35610                       --------->ZAT14            <-----------RAV1(1)     --------->TCP20  --------->HSFB2a(2)  <---------ZAT14     --------->ARR11(3)    --------->TOE2(3)  <---------HSFB2a(2)  --------->ZAT18     <---------ARR11(3)    --------->TOE1(3) -----ARR14(2)         <---------ZAT18     <---------GLK1(2)    ----------->RAV1(2)         --------- ---->ARR14(2)---------->DOF2<---------TOE2(3) <---------YAB1 <-----------GT1<-----------RAV1(2)   ttttctcgatgggccttagagcaagtccactaagggtttttagtagatttttatggtgggtttttaacctgaaatgggcccagttgaacaaaaaacacaa  690600                                            --------->ANAC55(2)                                            <---------ANAC58                                            <---------ANAC58                                     ------>NtERF2        <------------CBF                      <------------CBF      ====================bZIP_DOF                  ------>ZmHOX2a(1)----------->HVH21     --------->ATHB12                  --------------->AGL15     <---------ANAC55(2)                  <---------------AGL15     <---------O2<---------AHL20(2)                 <-----------------AGL2     <---------TGA1a                 <-----------------AGL3     --------->O2<---------YAB1                 ----------------->AGL3     --------->TGA1a            <---------HSFB2a(1)   --------->HSFB2a(2)  <-----------TBP                        <------ >ANAC46    --------->HSFB2a(1)   <---------HSFB2a(2)<----------DOF2   <------------CBF   ---------->DOF2   caattcagttagaaacgttcctaaaattgggtttttcgcgacccatacgtggcatctttttattgggttaacttattgacaaaaccaaaaaaaaaagctt  690700                                            <------NtERF2                                           ------>NtERF2                                           <---------ATERF1(1)                                           --------->MYB52(1)                                          --------->DEAR3(1)                                          ----------->HVH21                                         --------->RAP2.3(1)                                         --------->DEAR3(2)                                         --------->ATERF1(1)                                         <------NtERF2                                        <---------RAP2.3(1)                            --------->ATHB12                                        ------>NtERF2                         ----------->RAV1(1)                                       <---------DEAR3(1)                  --------->bZIP60(2)          <----------DOF2            <-----------HVH21                     --------->ANAC58          *TSS                      <-----------RAV1(1)                    --------->bZIP60(1)      --------->KAN4(2)     ---------->ID1--------->At1g77200              --------->ANAC46 <---------ANAC46        <----------DOF2<---------ATERF1(1)                --------->ANAC58 ---GLK1(2)     <<<<<<<<<TBF1  ------>ZmHOX2a(1)            --------->ATHB12------>NtERF2   ctcgcgtttattcttttcttcttctctcttttcctcttgtgtcgccgacggagacacaaaatcgattgaaaatttcgacgccacaaaatcgattggaagt  690800                                                                           <---------At4g35610                                                                    <---------At4g35610                                                                    <---------HSFB2a(1)                                                                    <---------HSFC1(2)                                                                    --------->HSFC1(2)                                                                    --------->HSFB2a(1)                                                                    --------->ZAT2                                                               <-----------RAV1(2)                                                <---------------------WRI1 --------->ZAT2                                        =================================HOX2a_HOX2a                                        ------>ZmHOX2a(2)     <---------ZAT2                                      --------->ARR11(3)      --------->ZAT2                                      <---------ARR11(3)      --------->At4g35610                                   <---------WOX13(1)       --------->ANAC46                    -----                                 --------->ATHB12       <-----------GT1    <---------ZAT2     -------                            --------->DAG2    <---------ARR14(2)    --------->At4g35610       -------      <------ZmHOX2a(1)    ---------->DOF2    --------->ARR14(2)  <------ZmHOX2a(1)      <---------ICU4   cttagctaggaatcgagaatgctatagctaaaagttgattgatcttcatattcgaaatttacacagcaggagcttccagcttgcaaaccaattcttacgc  690900  Previous    Next  AGI:  At4g01590.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45800.1) Range:  from: 688881    to: 690415    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g01593.1    Description:  other RNA Range:  from: 690710    to: 692169    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g01595.1    Description:  MAP kinase. similar to ATMPK18 (ARABIDOPSIS THALIANA MAP KINASE 18), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G53510.1); similar to double HA-tagged mitogen activated protein kinase 18 [synthetic construct] (GB:ABG54345.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009) Range:  from: 690726    to: 691993    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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