Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                                <---------LBD16                                                      --------->DEAR3(1)        --------->ATERF1(1)                                                     <------NtERF2             <---------RAP2.3(1)                                                    ------>NtERF2             <---------RAP2.3(2)                                        <---------ZAT18                       <---------DEAR3(1)                                        --------->ZAT14                      <---------At4g35610    <---------ANAC46                    <---------ZAT14------>NtERF2         --------->At4g35610    <---------ANAC58           --------->HSFB2a(2) --------->ANAC46  <-------MYC3<---------DEAR3(1)--    <---------ANAC58       --------->GLK1(1)   <---------HSFB2a(2)   ------->MYC3<---------ANAC46<--- ---->ARR14(2)             <---------GLK1(1)   --------->HSFB2a(2)  --------->O2<------NtERF2 <------ -----ARR14(2)  <---------LBD16<---------HSFB2a(2)--------->SPL7  <---------ALFIN1 <------NtERF2 ----   tttgaggcgttgagttttctcggcttcagatttctcgaccagtacagttccagacgccgagactttcaccacgtttctgagcggcggagagagcattcgt  545400           --------->RAP2.6(2)           --------->RAP2.3(2)                                          ------>NtERF2          --------->RAP2.3(1)                                          --------->ANAC58         <---------At4g35610     ----------->HVH21                     --------->ANAC58     --------->ALFIN1           --------->LBD16                      <---------ATERF1(1)   <------ZmHOX2a(1)           <---------ANAC58        <---------At4g35610 ---ANAC58--------->ATERF1(1)  <---------ANAC46        --------->At4g35610          --------->At4g35610 ------->LBD16                 <---------ANAC58        --------->ZAT14 --------->ANAC46          ---- ------LBD16              <---------HSFC1(2)           <---------ZAT14--------->ATERF1(1)        ==== ---ANAC58<------NtERF2   --------->HSFC1(2) --------->At4g35610   <------ZmHOX2a(1)<---------At4g35610 ----->SPL7>>>>>>>>>AtERF-4   <-------TEIL---------->DOF2 <---------At4g35610       --------->ZAT2---   gcggaggatggagccgctaatggtgagaaacgtccgtgaaacgaagaagcggaagactgcagaagcgaaggagacgccattgtcgaagctccaagtggat  545500                            <---------MYB46(3)                          <-------GAMYB                         --------->MYB52(2)      --------->HSFC1(2)                         <---------MYB46(3)      --------->HSFB2a(1)      <---------ANAC46<---------SPL7             <---------HSFC1(2)      <---------TGA1a<---------ANAC58            <---------HSFB2a(1)      ============================MYC_MYB       ------>NtERF2    --------->ZAT14  <---------ANAC58          *TSS                        <------ZmHOX2a(1)    <---------ZAT14 <------NtERF2         --------->MYB52(1)             <---------TOE1(3) ------>DOF2 <---------At4g35610       --------->ANAC46                  <---------TOE2(3) <---------MYB52(1) ===============bZIP_DOF<-------TEIL   >>>>>>>>>>>>>>>>>LFY    --------->ETT(2)          <---------ANAC46 ------>DAG2 --------->At4g35610     <-----------GT1           ----------->HVH21 <------ZmHOX2a(1)  <   aaagtgtgaagtgagagctctcggcgttcgttgttgattaaacccaatggcaccttcgtaatttgttgacagtttgaggataaggagttttccgtttagc  545600                                                             --------->ARR11(3)                            <------NtERF2           <---------YAB1           <---------AHL20(1)                     --------->YAB1                   <---------MYB46(3)       --------->YAB1       ------------>CBF     <---------YAB1       --------->AHL20(2)            < ----------DOF2     <---------MYB52(2)  --------->AHL20(2)   <---------ARR11(3)   <--------P     <---   ccctttaaaacataatatttcaactaaggccccaatatttgataatatactattatacttagagattttagataaaatataggggttgtttcatatgggc  545700                                                                               --------->TGA1a                                                                               <---------ZAT2                                                                               ======================                                                                               --------->ZAT2                                                                              -------->P                                                                              ------>MYB46(1)                                                                             --------->ORA47(1)                                                                            <---------MYB46(2)                                                                            --------->DEAR4(1)                                            <---------ARR14(2)              --------->MYB46(3)                                            ------->TEIL                    --------->DREB2C(2)                                            --------->SPL7                  --------->DEAR3(1)                                            --------->ARR14(2)           --------->ANAC46                                          <---------SPL7            <---------ARR14(2)                                         <---------ANAC55(2)        --------->ARR14(2)                                         --------->ANAC46        --------->ANAC55(2)    ----------->GT1                                ----------->GT1          ---------->ID1  <---------ALFIN1        <--- ---------CCA1(2)              <---------TOE2(3)       <-----------RAV1(1) --------->DEAR3(2)    ---- ------MYB59<---------MYB52(1) <---------TOE1(3)--------->LBD16<-----------GT1------>MYB83      *TSS   ctaaatctcagcccgtttactatttgggcttctaaggtataacccgtacccgtgtttttgttgttttacatatccacaccgacctgagaagagtcaaaaa  545800                                                                                          <----------DOF2                                                                                   <-----------HVH21                                                                                  --------->ANAC46                                                                                <-----------RAV1(2)                      ------>ZmHOX2a(1)                                        <-------TEIL                      <---------At4g35610                                 <---------LBD16 ===========                <---------ANAC58                                     ----------------------->TaNAC69(2)                <---------ANAC58               <----------DOF2     <----------DOF2<---------At4g35610          <----------DOF2  <----------DOF2   <---------At4g35610 <---------At4g35610<---------ZAT18 ====================bZIP_DOF             <---------At4g35610 <---------At4g35610 --------->At4g35610 -------ID1    ---------->ID1           <---------ANAC58    <---------ANAC58  <-----------HVH21 ------->GT1 <-----------RAV1(1)        <---------ANAC58    <---------ANAC58  <---------ARR14(2) ----   cgaaaaacctctcttttgtcgttcctctgctttcttcgatttgcttctgctttcttcgatttgcttctgctttcatcgcggttcaggtcactcttttctc  545900                              <---------TOE1(2)                             <---------ANAC46                           --------->O2                           <---------ANAC46                           <---------TGA1a                           ===============================bZIP_DOF                           <---------O2                       <------------AtMYB77                       --------->DEAR3(2)                       --------->MYB46(3)                       ==============MYC_MYB                 --------->AtLEC2            <----------DOF2===============MYC_MYB            =========================bZIP_DOF           <---------------AGL15           --------------->AGL15          <-----------------AGL3          ----------------->AGL1    --------->At4g35610          <-----------------AGL1    <---------At4g35610        <---------ARR14(2) --------->TGA1a                                                <---------ANAC58        --------->GLK1(2)<-----------HVH21                                  <-----------GT1 ====================================bZIP_DOF  <----------DOF2         ------>ZmHOX2a(1)  <---------ANAC58 ----->ANAC46  <---------AtLEC2  <--------P   --------->TOE2(3)<-----------GT1  --------->YAB1   agccatggcgattcctttcatggaaaccgtcgtgggtaagcttcaaaacctttttctgagacattttactatcctgtttcactcatcgtatttcgttttt  546000                     <---------ANAC46                     <---------ANAC58                     <---------ANAC58                   <---------ANAC46                 <---------ZAT14               <---------MYB46(3)                 --------->ZAT14               --------->MYB52(2)                <-----------RAV1(1)   ----------->HVH21          <----------DOF2        --------->GLK1(2)                                                <--         <---------ANAC58 <-------GAMYB       <---------TOE1(2)        <----------DOF2       <-------         <---------ANAC58 --------->REM1(2)  <---------MYB52(1)      <---------At4g35610  ---------->ID1   gtttgggttttgctttctgtgttgtgtgtgttgagattccatgactcgtttgtttcatataccatcgtctctgcttctcgtttctaaattttgttctttt  546100                    <---------TOE2(3)                 =========================HOX2a_HOX2a                 ------>ZmHOX2a(2)                <---------At4g35610                --------->At4g35610               <---------ARR11(3)           --------->TOE2(3)         --------->SPL7         ------->TEIL                                      <---------ANAC58      <---------ANAC58                                     <---------ANAC58      <---------ANAC58                          ---------->ID1     --------------->AtSPL8                 <---------ANAC46                                  <------     <---------ZAT18<---------TOE1(3)       <---------ANAC58                                <-------- -------YAB1   <---------AGP1      ------>ZmHOX2a(1)      <---------TOE1(2) <---------At4g35610 ---DOF2<---------CCA1(2)    <-----------GT1<---------ANAC58    --------->ATHB12 --------->ANAC55(2)   ctaatagtgcgtaccttgatctgaggttttattactcctactagtttcttgtcttactcgtgcgtttgatttgatttgagcttatgtgatttcatcatct  546200                      --------->HSFB2a(1)                      --------->HSFC1(2)                      <---------HSFC1(2)                      <---------HSFB2a(1)      <---------ARR14(2)                      <---------ZAT2           --------->ARR14(2)                  --------->ANAC46            <------ZmHOX2a(1)                 ------->TEIL             --------->TOE2(2)                             --------->ATHB12                 <---------LBD16        <---------ARR11(3)                       <---------ICU4               <---------SPL7  <---------MYB52(1)                               ------>ZmHOX2a(1)   <---------TOE1(2)  <---------At4g35610 --------->TOE1(2)           <----------DOF2  --------->LBD16  ------>ZmHOX2a(1)  <-----------ARR10  --------->ARR11(3)       <------NtERF2 --------->TOE2(3) ---CCA1(2)  <---------------AtSPL8     --------->GLK1(2)  --------->DAG2    ---------->ID1 -ICU4       <---------------AtSPL3 --------->TOE2(3)     ---------->DOF2   <-----------GT1   cttcctcggttttagaatgtacggagcttctctgttaaccaaaatctaggatttgggaagaaaagtcggagtcttttttttcctcattcccgattggaaa  546300  Previous    Next  AGI:  At4g01310.1    Description:  ribosomal protein L5 family protein. Identical to 50S ribosomal protein L5, chloroplast precursor (RPL5) [Arabidopsis Thaliana] (GB:O04603); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96601.1); contains InterPro domain Ribosomal protein L5; (InterPro:IPR002132) Range:  from: 543970    to: 545547    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g01320.1    Description:  ATSTE24. similar to Os02g0680400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047739.1); similar to CAAX peptidase [Hordeum vulgare subsp. vulgare] (GB:CAL26913.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39660.1); contains InterPro domain Peptidase M48, Ste24p; (InterPro:IPR001915) Range:  from: 545796    to: 549261    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version