Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <-----------GT1     ----------->RAV1(2)     <---------LBD16   ------>ZmHOX2a(2)  --------->GLK1(1)                --------->At4g35610  <------ZmHOX2a(2)                <---------At4g35610 --------->ARR11(3)                <-------GAMYB                     ------>ZmHOX2a(1) --------->ARR14(3)             --------->ZAT14                     <---------------AGL15 <---------ARR14(3)             <---------ZAT18                     --------->TOE2(3) <---------ARR14(2)             --------->ZAT18                     --------------->AGL15 --------->ARR14(2)   <---------ARR14(2)                           ----------------->AGL1 <---------ARR11(3)   <---------ARR11(3)                 <------ZmHOX2a(2) ---------At4g35610   --------->ARR11(3)                 ===================HOX2a_HOX2a ---------GLK1(1)     --------->ARR14(2)               --------->At4g35610 -------->At4g35610  <---------CCA1(2)  ----------->RAV1(1)        ----------------->AGL2  <--------- ----DOF2<---------GLK1(2)      <---------ZAT14  ------->TEIL    <-----------GT1      ------->TEIL   gcagatcccctgattttccatacatatctactagtgcagttgcaacatatgcatcgcagatcaaatttttcctcaaacagaaaccgtgaacctctttgcc  449400                         --------->AHL20(1)                         <---------AHL20(1)                      <---------ALFIN1                         <---------ARR11(3)                     -------->P                         --------->ARR11(3)                     ------>MYB46(1)              --------->ANAC46                                  ------>MYB83              --------->ANAC58                                --------->AtMYB61              --------->ANAC58 --------->ANAC58              --------->MYB46(3)         <---------ZAT6 <---------CCA1(2)               --------->SPL7    <---------ANAC46  ------>MYB46(1)                <---------ANAC46                  --------->YAB1  <---------ZAT14   <---------MYB59                  <---------ANAC58                <---------TOE2(3)  --------->ZAT14 -------->P   --------->ANAC58      <---------ANAC58             <---------AHL20(2)  --------->REM1(2) --------->TOE2(3)            --------->At4g35610              --------->AHL20(2) -DOF2 <---------ZAT18------>MYB83    --------->ALFIN1<---------SPL7        ------>ZmHOX2a(1)<-------   actgtgtagtagacttaagcaacctaatatcttaagcaaggtggacatagttgctgcgttcggaccaacaccttcttcctgcattttaatgaaaactttg  449500                                --------->LBD16                           --------->HSFB2a(1)                      --------->HSFB2a(2)                <<<<<<<<<<<<<AGL25                --------------->AGL15                                    <---------DAG2                <---------------AGL15                               <---------ALFIN1               <-----------------AG                              --------->PCF2               ----------------->AGL2                            <---------PCF5               ----------------->AGL3                            <---------TCP16(1)               <-----------------AGL3                         --------->MYB52(2)               <-----------------AGL2                       <---------MYB52(1)               ----------------->AGL1                      <-----------HVH21               ----------------->AG                       --------->O2<---------ALFIN1               <-----------------AGL1                     --------->ANAC58             <-----------GT1--------->ARR11(3)            --------->ANAC46           <---------At4g35610           <---------HSFC1(2)   ------>ZmHOX2a(1)         --------->ANAC58<----------DOF2      ------       ------>ZmHOX2a(1)   <---------HSFB2a(1)            --------->bZIP60(2)      --------->REM1(1)       --------->LBD16<---------HSFB2a(2)         --------->ANAC46 --------->ATERF1(1)       <------- ---DOF2   --------->HSFC1(2)   ----------->GT1   --------->AtLEC2------>NtERF2  ------>ZmHOX2a(1)   agagcattcctgaagtttccatttttggaacatcctgaaaaaatggctgtccatgaaaccacgttaggggccacacctttctccttcatcttccctatca  449600                       ---------->DOF2                     --------->LBD16                --------->GLK1(1)       --------->ANAC58                                           <-                <---------GLK1(1)       --------->ANAC58                                         <---             <---------TOE2(2)        ---------->DOF2                                            ---- --->YAB1    <---------TOE1(2)      <---------HSFB2a(2)           <-----------RAV1(2)           ----- ----HVH21  <-----------RAV1(2) --------->GLK1(1)    <---------ANAC46       ------>ZmHOX2a(2)   <----   catctaatgccttctcaggtttccccaaagtcgcatacccagaagcaagactgttccatgtaatagcatcaggtttgatcccttccttctccattctaat  449700                                           --------->LBD16                                          --------->LBD16                                     <---------HSFB2a(1)                                   ---------->DOF2                                 --------->ANAC58                                 --------->ANAC58                              --------->ZAT18          --------->At4g35610 <---------SPL7                   ----------->RAV1(1) ---------->DOF2              --------->TOE1(2)             --------->ANAC58 --------YAB1                <---------ANAC58               --------->ANAC46 ------ICU4           <----------ID1 --------->HSFB2a(1)    --------->AtLEC2                    ----- ----->YAB1     ------>ZmHOX2a(1)--------->ANAC46           --------->ANAC58        --------->YAB1--- ---->ICU4<---------At4g35610<---------ANAC58         --------->GLK1(1)          --------->WOX13(1)<- -----ATHB12    <----------DOF2 --------->SPL7   ----------->GT1                --------->MYB46(3)---   catcaaagcttcagcatcctttagaagacaagcgtacgaaagtcccgagacgagtgaattccaagcaacaatgttcttcgcatccatcatatcaaaaacc  449800                                                                                                   <-        --------->DAG2                                                                         <-----       --------->SPL7                                                                         <------     <---------SPL7                                                                           <------    <---------ANAC58                                                                       --------->ARR14(2)    <---------ANAC46                    <------ZmHOX2a(2)                <---------At4g35610  <------    <---------ANAC58                  --------->WOX13(1)           --------->SPL7          <---------ARR14(2) --------->LBD16                     <---------ETT(2)        --------->ANAC46 --------->GLK1(1)------ ---->AtMYB61                       --------->DDF1        <-------TEIL---------->DOF2      ------->TEIL --->MYB46(1)--------->ANAC58  <-------TEIL    <---------MYB46(3)<---------SPL7         <---------ANAC55(2) --------LBD16          --------->AHL20(2)     ----------->GT1  --------->TOE1(1)       --------->ANAC55(2) --->MYB83   --------->ANAC58 <-----------GT1 --------->ALFIN1  --------->TOE2(1)--------->TOE2(3) --   atccgggcgtaaggcaagtagccagttttaatatacatgtcgatcaaggtggtttctacatacacatcgtaccaaagctgatttcttaatatgtatccgt  449900                                                                         <---------ANAC58                                                                    <---------ANAC58                                                                    <---------AtLEC2                                                                    <---------ANAC58    <----------DOF2                 --------->REM1(1)            ------->MYC3 ------>ZmHOX2a(2)              --------->At4g35610              <-------MYC2 --------ARR14(2)               <---------At4g35610              ------->MYC2 ----LBD16                   <-------TEIL                        <-------PIF5 ---ANAC46                  --------->ARR14(2)                   ------->PIF5      ------------>CBF ---ANAC58                --------->LBD16                        <-------MYC3     --------->ANAC58 ---ANAC58              <---------LBD16                        ------------>OsbHLH66 --->LBD16<---------TOE1(2) <-----------HVH21                <---------At4g35610  --------->ANAC58 ------->ARR14(2) <---------At4g35610                   <------------CBF <---------ANAC58          --   ggatcgctttcccaagtttaagatgccccggttcagctacagcttgaagaagactactaattgagctcgtgcttggcttcagaccagcaatttgcattct  450000                                                                        <---------ARR14(2)                                                                        --------->ARR11(3)                                                                        --------->ARR14(2)                                                                        <---------ARR11(3)                                                                       <---------CCA1(2)                                                  ---------->DOF2   <-----------------AGL3 <---------ARR11(3)                                         <---------ARR14(2)       <-----------GT1          --------->ARR11(3)                                         --------->ARR14(2)  <---------ANAC58              --------->ARR14(2)                              <----------DOF2  <<<<<<<GRF7   <---------ANAC58 <---------ANAC58       ------------>CBF   --------->ANAC58   ----------->HVH21 --------->ANAC46            <---------ARR14(2)    ---------->DOF2       --------->ANAC58 ----------->RAV1(2) --------->bZIP60(2)        <---------CCA1(2) ---------->CBF   <----------DOF2     --------->YAB1     --------->GLK1(1)    <---------ANAC58   cttcaatacagcaatggcatctttggataagcctttagaagcataacctgacaaaagagagttccatgtcactatatctggcttcagaccacatatctcc  450100                                                      --------->AHL20(2)                      -------                                         <---------ANAC46                          <---------MYB52(1)        <------ZmHOX2a(1)                <---------ANAC58                         --------->LBD16     <-----------RAV1(2)                 <---------ANAC58                       <---------LBD16     --------->HSFB2a(2)    --------->ANAC46      ----------->GT1             --------->GLK1(2)     <---------HSFB2a(2)--------->At4g35610   <-----------GT1       --------->ANAC46  <----------DOF2   atctcgtccaggagaccgatagcatcatctacataaccaagtttcgtataactcgataaaatcgagttccacgaagacaaattccggtctttcatcgagt  450200                                                 --------->YAB1                                                <<<<<<<<<ARR2                                              --------->WOX13(1)                                 --------->HSFB2a(2)                      <---------ANAC58  --------->ANAC55(2)         --------->LBD16         --------->LBD16<---------ATHB12        <---------LBD16          ------>ZmHOX2a(1)---------->DOF2    <----------DOF2   <---------ANAC58  <---------ANAC55(2)                     --------->ANAC58 ---->GT1------>ZmHOX2a(1)       <---------HSFB2a(2)  ----------->GT1           --------->ANAC58 ----   taaaaactttcctggataattcaagcttgccattcctcgaatacatgacaatcaaagagttacacatagacacatttgattcaagcccgagtctcagaac  450300  Previous    Next  AGI:  At4g01030.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39743.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 447941    to: 449838    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version