Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->YAB1                      --------->LBD16                    ------>ZmHOX2a(2)                  <---------ARR14(2)                  --------->ARR14(2)                              ---------->DOF2      --------->CCA1(2)                ----------->HVH21 --------->YAB1          <------MYB83                --------->ARR11(3)              <-----------------AGL1   <---------YAB1     ----------->GT1             <---------ARR14(2)     <---------MYB46(3)       <---------YAB1              <------MYB46(1)             --------->ARR11(1) ->YAB1       ----------------->AGL1 --------->YAB1      --------->MYB59    <---------GLK1(2)       < ->TOE2(3)  --------->ZAT18 --------->YAB1   <---------YAB1   ---------->DOF2--------->GLK1(2)  -----   gcaatattggttaatgccctgatctgggaatcataataagcatgattttgtttgtttgtttggttaaagaaagagagagattctattagatatggatata  148400                                                                                                <----                                                                                    <---------AHL20(2)                                                                                <---------CCA1(1)                                                                                <---------RVE1(1)                                                                               --------->ARR11(3)                                                                               <---------AHL20(1)                                         <---------AHL20(2)                    --------->AHL20(1)                            <---------KAN4(1)        <-------MYC2              <---------ARR11(3)   <                            --------->KAN4(1)        ------->MYC3      <---------ANAC46        ------                            <----------TaMYB80       ------->MYC2    <---------ANAC46         ------- ---------YAB1       --------->GLK1(2)----------->GT1<-------MYC3    <---------ANAC58         <------ ------>GT1   ---------->DOF2--------->KAN4(2)   ------>ZmHOX2a(2)   <---------ANAC58 ---------->DOF2   gtataattccatagtctaaagagaaactgaatattccaaatagtaaattgatccacatgcgactagtcttgtcgtgtgtaagatattaaaaagaaaatga  148500                                    --------->AHL20(2)                                    --------->AHL20(1)                                --------->AHL20(2)                              ----------->GT1                     <---------At4g35610            <---------TOE2(3)<--------HAHB4                     <---------ZAT2 <---------AHL20(1)    <---------TOE2(3)       <-----------GT1 --------------->AGL15   <---------ICU4        --------->ATHB12     <---------WOX13(1)<---------------AGL15  --------->AHL20(2)    <---------ATHB12 -----GLK1(2)        --------->ZAT2 <---------AHL20(2)    --------->DAG2                      <------ ----------DOF2      --------->At4g35610      <---------ATHB51      --------->ICU4          <-------- -->HAHB4           <-----------RAV1(1) --------->YAB1  ---------->DOF2                     --------- -->ICU4     <----------DOF2 --------->DAG2   <---------AHL20(2) <------ZmHOX2a(1)      ---------->DOF2 ---YAB1    <---------DAG2  ---------->DOF2   --------->ICU4   --------->MYB59     ----------->GT1   ttctttgattaacaccttttgtctgctgcataaagtaattaattagaaataattaagaaaaaggttaggaatcatttaagaagaagagaaaaaagatgtc  148600                                       ------>MYB46(1)                                       ------>MYB83                                     --------->AtMYB61                                     <---------MYB111(2)                                     --------->DEAR3(1)                                        ------                                     <---------ALFIN1                                         <------  <----------DOF2                   <---------ZAT2                                           -------- <---------ANAC46                   --------->bZIP60(2)                                     --------- <---------ANAC58                   --------->ZAT2                                     ----------->RAV1(2) <---------ANAC58                  ------>NtERF2                                     <---------ARR14(2) -----HVH21                       <---------ALFIN1                                  ------>ZmHOX2a(1) -ARR11(3)                   <---------At4g35610                      <----------DOF2--------->ARR14(2) >ARR11(3)                  <---------ALFIN1           ------>ZmHOX2a(1)  <----------DOF2------>ZmHOX2a(1)   atggctttgacttctagccacttatgtctgccactgccacctccctcttctcaattcctattctgcccttctctttcttttagttcctatcctgccggtg  148700                                                                         <---------DAG2                                   <------ZmHOX2a(1)                     <---------------AGL15          <-------GAMYB        <---------MYB52(1)                        <----------DOF2 <---------YAB1              <---------ANAC58               <---------YAB1                ----------- --->ALFIN1                  <---------ANAC46         <----------DOF2    --------------->AGL15   <--- ---MYB52(1)      ----------->GT1--------->MYB59     --------->TOE2(3)<---------AHL20(2) <-----------HVH21 ->LBD16 ----------->GT1<----------DOF2        <---------HSFB2a(2)    <-----------GT1   --------->bZIP60(1) >ATERF1(2)   <---------YAB1 <---------ANAC58  --------->HSFB2a(2) ------->TEIL         <---------bZIP60(1)   ttgatgaatgagggttaatatagtaactttggcgttaggaactatagttccaaaacctttttctgaatgaatttactttttggaggtatgaagtcacagc  148800                                                                                                -----                                                                                                <----                                                                                                -----              *TSS   <---------GLK1(2)                                                         ------     <---------ARR11(3)                                                                --------->YAB1     <---------GLK1(2)                                                   <----------DOF2     <------- >HVH21 <---------AHL20(2)   <---------ALFIN1                <----------DOF2        --------->WOX13(1) -------DOF2  --------->AtLEC2                      ---------->DOF2   <-----------GT1  --------->ZAT6   ttttacagattttatcttgcaaaaattctctccacatttcaaacgtctaatagttaaagagagcttttgttttttctttcccatgtctatcagtatcacc  148900                               --------->TOE2(3)                               --------->TOE1(3)                             <---------ATHB12                            ------>MYB46(1)                            ------>MYB83                          ------->GAMYB--------->MYB52(1)                         --------->MYB46(3)                      --------->MYB46(3)                      <---------MYB55(2)                      <---------MYB46(2)                      <---------MYB111(1)                      --------->AtMYB61------>MYB83                      --------->DEAR3(1)          --------->YAB1------>MYB83  <---------ALFIN1         <---------YAB1--------->MYB55(1)        --------->ARR11(3)--------->AtMYB61       --------->CCA1(1)------>MYB46(1)-------->P  --------->MYB46(3)       --------->RVE1(1)-------->P   --------->MYB46(3) ---->AtMYB61         <---------MYB111(2)         --------->ANAC58 -----ALFIN1         --------->MYB46(3)------>MYB46(1)     --------------->AtSPL8          ------>ZmHOX2a(1) ---->DEAR3(1)     --------->AtMYB61 ------->GAMYB--------->ANAC58                 <<<<<<<<<TBF1 --->MYB46(3)   --------->ANAC46  <-----------GT1--------->ZAT18             ------>ZmHOX2a(1) ----GT1<---------ARR11(3)<---------MYB59  --------->LBD16<---------ANAC46 <------------------------ANAC81   accgagaaaatatcatcaacaccaccaaccaaacattaacccacccgagagtacccaatgccatgtactacttatcttcctcttcttcttctcctcttcc  149000                                                                                <------MYB46(1)     <                    --------->ANAC58                                            <------MYB83     ----                    --------->ANAC58          ------>MYB83                 ------>NtERF2      -------                  ---------->DOF2  ---------->DOF2                         --------->LBD16    <------         --------->AtMYB61       <---------YAB1                           <---------RAP2.6(2) -------      <---------ALFIN1         --------->YAB1 ------>MYB46(1)            <---------LBD16  --------->At4g35610      --------->AtMYB61       <---------YAB1--------->AtMYB61          <-----------GT1    <---------At4g35610     --------->MYB46(3)---------->DOF2      <---------MYB59   ---------->DOF2<---------ANAC46--------   ttcttccaccaccatctgtacaaagcaaagttatcatcaaaggaaaccaaaccattctgagtttcaaagctattttccggcttggtttcttcagcaccac  149100                                                          <-------MYC3                                                          ------->MYC3                                                         <---------TGA1a       --------------->AGL15                             --------->TGA1a       <---------------AGL15                             --------->O2       ------>ZmHOX2a(1)                                 <---------O2      <-----------------AGL1                            <---------TOE2(2)                   <--------      <-----------------AGL3                            <---------TOE1(2)                   ---------   --------->ARR14(2)                                  <---------ALFIN1                     ---------   <---------ARR14(2)                                 --------->DEAR3(1)                 <---------ANAC46 <---------MYB46(3)      <---------ARR14(2)           --------->MYB46(3)              <---------MYB52(1) ---------ATHB12        <---------GLK1(1)            --------->ANAC58          ----------->HVH21 ----->AtMYB61          <---------CCA1(2)            --------->ANAC58          <---------ETT(1) ----- -->DEAR3(1)          <---------ANAC58              --------->ANAC46        <---------ARR14(2)------- ---ALFIN1            <---------ANAC58             <---------ALFIN1         --------->ARR14(2)------>ZmHOX2a(2) -->AtMYB61       <---------ANAC58              ------->GAMYB       <------NtERF2 <-----------------AGL1 ->MYB46(3)       <---------ANAC58              ===================MYC_MYB  --------->GLK1(2)<------ZmHOX2a(2)   caatggttcctccaattggtacttgggtatctcttacgcttctatgccaactcccacccacgtttgggtcgccaatcgaatccgacccgtttcggatcct  149200                                                              <---------ANAC46                                                             <------NtERF2                                                            ------>NtERF2                                                           <---------DEAR3(1)                                                           <---------ANAC46                                                           --------->DEAR3(1)                                                          <------NtERF2                                                          --------->ATERF1(1)                                                         ------>NtERF2                                                         <---------RAP2.3(1)                                                        <---------bZIP60(1)                                                        --------->bZIP60(1)                                   ------>MYB83         <---------RAP2.6(2)                                   ------>MYB46(1)      <---------DEAR3(1)                  <--------                                --------->ANAC55(2)     <---------RAP2.3(3)                 ---------                                <---------ANAC55(2)   --------->MYB52(1)                  --------->LBD16                              --------->GLK1(1)       --------->REM1(2)                  --------->ANAC46                           --------->LBD16           ----------->HVH21                   --------->ANAC55(1)                         <---------LBD16     --------->ARR14(2) <---------MYB52(1)       --------->ANAC58     <---------ALFIN1  <---------ALFIN1<-----------TGA1--------->RAP2.6(3)              <---------LBD16 -ARR14(2)          --------->AtMYB61 --------->YAB1 ----------->TGA1                 -------->P >ARR14(2)    <---------ZAT2 --------->ARR14(2)     <-----------HVH21               --------->MYB46(3) >ARR11(3)    --------->At4g35610<---------MYB59--------->TOE2(2)                 --------->ANAC46<-- ->ZmHOX2a(1) <---------At4g35610<---------MYB111(1)--------->LBD16             --------->MYB46(3)--- ---->RAV1(2) --------->ZAT2 <---------ARR14(2)--------->MYB46(3)      --------->MYB52(1)--------->ANAC58   gactcttccactctcgagctcacctccaccggatacctaatcgtcagtaacctccgtgacggcgtcgtttggcagacggataacaaacaacccggaaccg  149300  Previous    Next  AGI:  At4g00335.1    Description:  RHB1A (RING-H2 finger B1A); protein binding / zinc ion binding. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G41350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39681.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 145904    to: 148339    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g00340.1    Description:  RLK4 (RECEPTOR-LIKE PROTEIN KINASE 4); sugar binding. similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G19130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39682.1); contains InterPro domain N/apple PAN (InterPro:IPR003014); contains InterPro domain Apple-like (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480) Range:  from: 148814    to: 151686    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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