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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                               <----
                                           --------->ICU4----------->GT1                       <----
                                  <---------ANAC58     <---------ANAC46              <---------MYB52(1)
    --------->TOE2(3)             <---------ANAC46     <---------ANAC58        ----------->HVH21   -
    --------->TOE1(3)      <---------ARR11(3)   <-----------GT1    ---------->DOF2 ----------->GT1 -
------ICU4        <-----------GT1 <---------ANAC58     <---------ANAC58 <-------TEIL--------->At5g28300
 
cattttgccttaaatttcttcttacttcttgatatttgtgtgtgtaattgttaaccagtcgtgtaaatccaaaagttcatatatgaccgtaaattgatat  33700
                                                                                                   x
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                                                                                                   x
                                             <----------DOF2            <---------ICU4             x
                                          <---------ARR11(3)            --------->ATHB51           x
             --------->HSFB2a(1)          --------->ARR11(3)            <--------HAHB4             x
             <---------HSFB2a(1)         --------->CCA1(1)     <---------ICU4                      x
             <---------HSFC1(2)          --------->RVE1(1)    <---------YAB1<-----------GT1        x
        --------->ANAC58             --------->AHL20(2)      <---------GLK1(2)--------->ETT(2)     x
        --------->ANAC58           ----------->GT1         --------->ICU4 <---------YAB1           x
    --------->YAB1                 --------->ANAC58  <---------ARR14(2) --------->YAB1             x
-----AHL20(2)--------->HSFC1(2)    --------->ANAC58  --------->ARR14(2)--------->ICU4              *TSS
-----YAB1  ---------->DOF2     --------->ANAC58   <---------ANAC58     <---------YAB1              x
-------->AHL20(2)              --------->ANAC46   <---------ANAC58  <---------YAB1                 x
----------->CBF                --------->ANAC58   <---------ANAC46<-----------GT1--------->bZIP60(1)
 
aattcaataacaaggaaagttctaagcctaaaacaagcaagaaaatacctttgccgtatacaaagattattaccattattatcgacatcacagaatgtag  33800
                       --------->ANAC58
                       --------->ANAC58
                  <---------ZAT18
                  --------->ZAT18
               ---------->DOF2
            <------MYB83
            <------MYB46(1)
           <---------MYB46(3)
           --------->MYB111(1)
          <---------MYB52(1)                             <---------ALFIN1
       <-----------RAV1(2)                            --------->PCF2
  xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
 xxxxxxxxxxxxxxxx>smallRNA(i)                    xxxxxxxxxxxxxxxx>smallRNA(s)
 xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxx>smallRNA(i)
xxxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxxxxx>smallRNA(s2)
xxxxxxxxxxxxxxxx>smallRNA(s)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxx>smallRNA(s)
xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <---------PCF2
xxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxx>smallRNA(s)
xxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------TOE1(2)
xxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxxxxxxx>smallRNA(si3)          <---------ANAC58
xxxxxxxxxxxxxxx>smallRNA(se3)             <---------ANAC58
xxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------MYB46(3)   <---------DEAR3(1)
xxxxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------AtMYB61  --------->MYB52(1)
xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxx>smallRNA(fl3)          xxxxxxxxxxxxxxxx>smallRNA(i)
xxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ALFIN1
xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   xxxxxxxxxxxxxxx>smallRNA(si3)                 <---------MYB52(1)
xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxx>smallRNA(se3)              <-------GAMYB   <-
xxxxxxxxxxxxxxxxxx>smallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <-----------GT1     --
xxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxx>smallRNA(fl3)<---------MYB46(3)<-----------RAV1(1)
xxxxxxxxxxxxxxxxx>smallRNA(se3)<-----------GT1<---------DEAR3(2)        <---------ZAT6       -------
 
cccgtctagctcagttggtagagcgcaaggctcttaaccttgtggtcgtgggttcgagccccacggtgggcgatagtgttttttctgttgtttttgtaaa  33900
                                                     <----------DOF2
                                                  <---------PCF2
                                                 ----------->TCP11(1)
                                                --------->ABI4(2)              <---------At4g35610
                                               --------->ALFIN1  --------------->AGL15
                                             ------->GAMYB       <---------------AGL15
   ----------->GT1                         ------>MYB46(1)      <-----------------AGL2
--------At4g35610                         --------->MYB52(1)    <-----------------AGL3
------->At4g35610<----------DOF2         --------->AtMYB61   <----------DOF2   --------->At4g35610<-
--->DOF2<---------YAB1   <---------AHL20(2)------>MYB83   <-----------GT1 ---------->DOF2<---------AHL20(2)
 
gagctgaagttataaatgggctttgaaattaatgggttcgaacaccaacggtgggcctttttttctttctatttttgtaaagagctgaattttaaaatgg  34000
                                                                                 --------->ANAC55(2)
                                                                                 <---------ANAC46
                                                                                 <---------ANAC58
                                                                                 <---------ANAC55(2)
                                                                                 <---------ANAC55(1)
                                                                                <-------------------
                                                                              --------->ARR14(2)
                                                                              <---------ARR14(2)
                                                                              <---------MYB52(1)
                                                                             <-----------HVH21
                                                                            --------->LBD16
                                                                          <---------LBD16      =====
                                                                        --------->ARR14(2)     <----
                                                         <-----------GT1<---------ARR14(2)    <-----
                                                      ----------->GT1 <---------ETT(1)       <------
                                           --------->AHL20(2)         ----------->HVH21      -------
                   <---------TOE2(3)       <---------AHL20(2)        --------->DEAR3(2)   *TSS------
       --------->MYB52(1)                 <---------AHL20(2)         --------->MYB46(3)   --------->LBD16
      <---------AHL20(2)                  <---------AHL20(1)     --------->ANAC46<---------ANAC58
---------DOF2<------ZmHOX2a(2)            --------->AHL20(2)     ----------->HVH21      <---------LBD16
 
gctttgaaattaatggatcagtgaggttaaggcccatatttctaataaaattagaagtagttacaaacccgacccgacccggttacgtgtatgcggagat  34100
                                      <---------DOF5.7(2)
                                    --------->DOF5.7(2)
                                   <----------DOF2
    ------>ZmHOX2a(1) <---------HSFC1(1)                                                   ---------
----TaNAC69(2)        --------->HSFC1(1)                                                <---------ANAC58
===========HOX2a_HOX2a--------->HSFB2a(2)                                          ------>ZmHOX2a(1)
--ZmHOX2a(2)          <---------HSFB2a(2)                                       <------ZmHOX2a(2)
----ARR11(3)       --------->ARR11(3) <-----------GT1                          --------->ARR14(2)
---GLK1(1)   --------->At4g35610------>NtERF2      ----------->RAV1(1)         <---------ARR14(2)
-->GLK1(1)  --------->ANAC58   --------->DEAR3(1)<---------ZAT14            <------NtERF2<---------WOX13(1)
--->ARR11(3)--------->ANAC58<---------ALFIN1     --------->ZAT14  --------->WRKY38(1)   <---------ANAC58
 
cactctcctctccataagctaagctctagaaacaccgcctttaacgtctcgctgcaccatttttcatcgttgatcagtcgtcgatcctcttgagtgattt  34200
                                                                              --------->WRKY38(1)
                                                                              --------->WRKY12
                                                                            <-------GAMYB
                                                                           <---------ANAC46
                                                                           <---------ANAC58
                                                                           <---------ANAC58
                                                 <---------ZAT18          --------->ABI4(2)
                                  --------->GLK1(2)                       <-------TEIL--------->ZAT14
                                 <---------GLK1(2)                <---------YAB1      <---------ZAT14
                                 --------->ARR14(2)              --------->KAN4(2)  --------------->AtSPL8
      <----------DOF2    ---------->DOF2  ------>ZmHOX2a(1)      <XXXXXXXXXXXXXXXXXXXXMIR161.2
>ATHB12         <---------YAB1   <---------ARR14(2)            <---------MYB52(1) ------>ZmHOX2a(2)<
 
gattttagactttctagttatcaaactcgaaagatggattctgtccttgtagtgggcattgcatcggttattctcggtgcgttgatcgctgtactcttct  34300
                                                                   --------->ANAC55(2)
                                                                   <---------ANAC55(2)
                                                                   <---------HSFB2a(2)
                                                                   --------->HSFB2a(2)
                                                                  ------>ZmHOX2a(2)
                                                                  <---------LBD16
                                                                  ===============================HOX2a_HOX2a
                                                                 <------ZmHOX2a(2)
                                                                 ================================HOX2a_HOX2a
                                                                --------->ARR14(2)
                                                             ------>ZmHOX2a(2)
                                                             ====================================HOX2a_HOX2a
                                                            <------ZmHOX2a(2)
                                                            =====================================HOX2a_HOX2a
                                                           --------->ARR14(2)
               <---------At4g35610                         <---------ARR14(2)
               --------->At4g35610                         <---------ARR11(3)                   ----
           --------->LBD16                                <------ZmHOX2a(1)                <--------
          --------->HSFB2a(2)                             ==============HOX2a_HOX2a        ---------
         <---------LBD16  <---------TOE1(2)            <-----------RAV1(2)              ----------->RAV1(2)
         ----------------->AGL1                     --------->ATERF1(1)              --------->YAB1
         <-----------------AGL1                    ------>NtERF2<---------ARR14(2)  <---------ATHB12
  <---------At4g35610     <---------DEAR3(1)      <---------ARR14(2)       ---------->DOF2------>ZmHOX2a(1)
<--------P<---------HSFB2a(2) <-------TEIL        --------->ARR14(2)--------->LBD16 --------->HSFC1(2)
---------MYB52(1) ------>NtERF2            ---------->DOF2===============HOX2a_HOX2a--------->HSFB2a(1)
 
tcggtagctacttccggaagcggacatcggaggtgcaatccatggccaaagcggagcctcaggatccgatccggaatccaaagtcgaatcatcctgctcc  34400
                                                                                          --------->WRKY12
                                    <---------TOE2(3)                              <---------GLK1(1)
                                    <---------TOE1(3)                              --------->CCA1(2)
                               <---------TOE2(3)                                  <---------ARR14(2)
                               <---------TOE1(3)                      --------->GLK1(1)   --------->WRKY38(1)
                         --------->SPL7                               <---------GLK1(1) --------->At4g35610
>>>>>>>>>TBF1           <-----------------AG               --------->LBD16        --------->ARR14(2)
----->LBD16  <---------CCA1(2) --------->DAG2             <---------ANAC58  <---------GLK1(2)
-ZAT2 <---------ICU4   <---------SPL7----------->GT1      <---------ANAC46  --------->ARR14(2)   ---
>ZAT2 --------->YAB1   <-----------HVH21   <-----------GT1<---------ANAC58  <---------ARR14(2)<-----
 
gaagaagaatcatcccaaatctcaagcgtccgataaggtaaggttttaactccattttgttccgagtttagggatttcagatttggatatgagttgactt  34500
                                                    --------->ANAC46
                                                    --------->ANAC58                 --------->ANAC58
                                                    --------->ANAC58                 --------->ANAC58
                                                  --------->MYB52(1)          ------->MYC3
                                         --------->GLK1(2)     ------>ZmHOX2a(1)  ---------->DOF2
  <----------DOF2         <---------ANAC58      <---------MYB52(2)     <---------AHL20(2)
------->DOF2              <---------ANAC46      --------->MYB46(3)     --------->AHL20(2)    -------
-----DOF2                 <---------ANAC58 --------->YAB1      <----------DOF2<-------MYC3  --------
 
taaagctttctcttcttcgtttctaaattgcttgtggaatgcagaatcagaacaaacggcatcatcctttagatttaaacacgttgaaaggccacggtga  34600
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AGI:  At4g00080.1   
Description:  UNE11 (unfertilized embryo sac 11); pectinesterase inhibitor. similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G62770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24520.1); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501)
Range:  from: 32893    to: 33718    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At4g00085.1   
Description:  pre-tRNA. tRNA-Lys (anticodon: CTT)
Range:  from: 33800    to: 33872    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At4g00090.1   
Description:  transducin family protein / WD-40 repeat family protein. similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G42660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24478.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680)
Range:  from: 34091    to: 36880    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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