Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->YAB1     <---------ATHB12 ---->GAMYB                   ---------->DOF2 ----->MYB46(3)             <---------ATHB12                   --------->ICU4 --->MYB52(1)        <---------ZAT14              ---------->DOF2      ---------->ID1 >ANAC58             --------->ZAT14          ---------->DOF2  <---------YAB1  <-----------GT1 >ANAC46             <---------ZAT18      ---------->DOF2    --------->YAB1<----------DOF2 >ANAC58      <---------REM1(2)       ---------->DOF2 --------->ARR11(3)<-----------GT1         -----   cggcccagtcatcgtctacccagtgaacaaatcaaagtaagaaagaaagaaagaaagagctagtcatgattttgtttcttttcacttgttgacaaaacaa  23436900                                                                                                    <                --------->ALFIN1                                                                   <-               <-------PIF5                                                  ------>ZmHOX2a(1)    ---               ------->PIF5                                               ===========================              --------->ZAT2                                              <------ZmHOX2a(2)       ---            <-----------RAV1(2)                  <------ZmHOX2a(1)       <---------ARR14(2)       <--           <---------ZAT2                        ================================HOX2a_HOX2a     ----      <------MYB46(1)                        --------->LBD16             --------->ARR14(2)     <----      <---------MYB46(3)<<<<<<<<<ARR2--------->At5g28300               <---------ANAC58         -----      <------MYB83      <---------ATHB12  --------->MYB52(1)           <---------ANAC58      --------    <--------P<---------ZAT2      <---------At4g35610                 <------NtERF2         <--------  <-----------RAV1(1) --------->WOX13(1) <---------ALFIN1           <---------DEAR3(1)  --------->At4g35610  ======================RAV  --------->YAB1<---------LBD16       <-----------RAV1(1)    <---------At4g35610 ----->DOF2<---------At4g35610    --------->At4g35610          ----------->RAV1(2)      --------->GLK1(1)   aagcatgttggtgagcaggtgggacaatcaaacatcagcagtaacaccggaggaagaggtattctacctggtggcgatcctaacatcggcatctccaggg  23437000         <------ZmHOX2a(1)         <------NtERF2     ---------->DOF2      ------>ZmHOX2a(2)    =============================HOX2a_HOX2a    ============================HOX2a_HOX2a    <------ZmHOX2a(1)    <------ZmHOX2a(2)   --------->ANAC58     <---------ARR11(3)   --------->ANAC58     --------->ARR11(3) ------NtERF2           --------->ARR14(2) --------DEAR3(2)       --------->ARR14(3) ------>ETT(2)          <---------ARR14(3) ==========HOX2a_HOX2a  <---------ARR14(2) ------>ETT(1)          --------->AGP1                                                   --------->At4g35610 -------DEAR3(1)       --------->GLK1(1)                                                <---------ARR11(3) ----->RAP2.6(3)       <---------GLK1(1)                                                <---------ARR14(2) -------HVH21         ----------->ARR10                                                 --------->ARR14(2) ---->ARR14(2)<---------ANAC46  <---------LBD16             <---------ZAT14             --------->GLK1(2) ->LBD16 ========================HOX2a_HOX2a                --------->ZAT14  <-------GAMYB -LBD16  =======================HOX2a_HOX2a          <---------GLK1(1)  <---------ARR14(2)    -------   tcggcaggaaaggatggagtagaagagatcttgaggcggaacagaagaatactggaattcagtgaagaagcagggatagggttgaagcagtatctgccac  23437100                                       <---------TGA1a                                       --------->TGA1a                                   ------>NtERF2                                  ----------->HVH21                                <---------HSFB2a(2)                                --------->HSFB2a(2)                          ------>ZmHOX2a(2)                                <---------LBD16                             <<<<<<<<<<<<<<<<<LFY                               <---------LBD16                           <XXXXXXXXXXXXXXXXXXXXMIR841B*                               <---------ANAC46                          <---------YAB1                          <---------------AGL15                        --------->CCA1(2)                         ----------------->AGL1                       --------->ARR14(2)                         <-----------------AGL2                       <---------ARR14(2)                        ------>ZmHOX2a(2)                             <---------ARR11(3)                       <------ZmHOX2a(2)                        <---------ARR14(2)       <---------ANAC58                      <---------ARR14(2)                       --------->GLK1(1)         <---------ANAC58                      <---------ARR11(3)                       <---------GLK1(1)        <---------ICU4                      --------->ARR11(3)    ----------->GT1  =======================HOX2a_HOX2a   --------->ANAC58   --------->ARR14(2) --------->ALFIN1    <------ZmHOX2a(1)--------->ATHB12------>NtERF2   --------->ANAC46  <---------GLK1(1) --------->O2       <------ZmHOX2a(1) >>>>>>>>>>>>>>>>>LFY   --------->ANAC58  --------->GLK1(1) <---------O2       ==========================HOX2a_HOX2a------ ---->RAV1(1)    --------->ALFIN1--------->LBD16 --------->GLK1(2)  --------->LBD16    --------->ICU4   attacacgacaagagaagagtggagatcccatttcggggacaagtggggagaatttgtgaggaggaaatccagatatgatccattggcaattcttgcgcc  23437200                                                       --------->AHL20(2)                                                       --------->ATHB51                                                       <---------AHL20(2)                                               --------->O2   <------NtERF2                        <-----------HVH21                                    --------   --------->ANAC58                   --------->MYB46(3)                            --------->ZAT14   --------->ANAC58               ----------->HVH21   --------->ICU4                <---------ZAT18--  ------>NtERF2  --------->DAG2 <---------ICU4 <---------O2                    --------->ZAT14     <- ----->RAV1(2) ---------->DOF2  --------->YAB1 <---------ANAC46                <---------ZAT14   ----   tggccaccgaatttttcaaaaggcagtctcatactcatgacccgtcgtctcgtggaattatttagggcctctctctctctctgtagtaaactctatcagt  23437300                                   --------->ARR14(2)                                   <---------ARR14(2)        ----------->RAV1(1)                             --------->ARR14(2)             --------->ANAC46                             <---------ARR14(2)           --------->ANAC58                          -                             <---------ARR11(1)           --------->ANAC58                        <--                            <---------CCA1(2)             --------->ANAC46                        ---                          <---------ANAC46            <---------ANAC58                            ---                          --------->ANAC55(2)         <---------ANAC58                            ---  <---------------AtSPL8  <---------ANAC58            <---------ANAC46                ---------->DOF2 ->ZAT6                   <---------ANAC55(2)        --------------->AtSPL8        >>>>>>>>>TBF1  --- ------->ICU4             <---------ANAC58           <---------------AtSPL8     >>>>>>>>>TBF1  ------ --------YAB1        <---------ATHB12*TSS            --------------->AtSPL3  >>>>>>>>>TBF1     <----- ------>DOF2       <---------At4g35610         ------------>CBF       --------->At4g35610   ---------   aaagattgtacatactgtttccgatgatgcgtatccatatatgtagtatcccaatttcgtacacaacagggaagatgaagaagaagaagaaagaaccaat  23437400       ------->GAMYB      --------->MYB46(3)      <---------ATHB12     ------>MYB83     -------->P     ------>MYB46(1)    --------->MYB55(1)   <---------MYB111(1)   <---------MYB55(2)   <---------MYB46(2)   --------->DEAR3(1)   --------->AtMYB61   <---------MYB111(2)   --------->MYB46(3)  --------->MYB46(3)  --------->DEAR3(2) ------->TEIL                                              <---------ANAC58 -------->ANAC46                                  <---------ATHB12 -------ANAC55(2)                                 --------->ICU4 ------>ANAC58                                  --------->YAB1 ------>ANAC55(2)                        <------MYB83<---------bZIP60(2) ------>ANAC46                           <------MYB46(1)   <---------ANAC58 ------>ANAC58                         --------->ALFIN1--------->ALFIN1           <-----------HVH21 --->ARR14(2)                          <--------P<---------TOE2(3)               <----------DOF2 ----ARR14(2)                       <---------TOE2(3)<---------ANAC46        <----------DOF2 --->CBF                   <---------ALFIN1  <----------DOF2              <-----------GT1   acgcaccaaccaagtattcattcatccccccatttgcaaaggttgggctctaatgatgtgggcttatctattctcttaactttctttcaggcccaatagg  23437500                                                                                  <---------ANAC55(2)                                                                                  --------->ANAC55(2)                                                                      <---------DAG2                                                                      <----------DOF2                                                                   <---------DOF5.7(2)                                                            --------->ANAC46      <---------ANAC58                                                            --------->ANAC58      <---------ANAC58                                             <---------MYB111(1) <---------MYB52(1)                --                                <----------ID1              --------->ANAC58    <-----------GT1    --              <-----------RAV1(1)----------->RAV1(1)   --------->GLK1(2)   <----------DOF2       ----     <---------ARR11(3)       --------->MYB52(1)  ---------->DOF2--------->DOF5.7(2)      ------>ZmHOX2a(1)   tccccaagttctatttatgtggtccatttacaaaacgacagacactaactactaaagattccaagccgttaacttttctttgttacttactcctatggac  23437600                  ----------------->AGL3                  ===================================================================================          --------->ATHB12          <---------ICU4          -------->HAHB4         <---------ATHB12           --------->YAB1         --------->ICU4<---------ICU4<---------ARR11(3)   --------->ANAC58    --------->YAB1--------->ARR11(3)   --------->ANAC58   <---------ATHB51 ------>ZmHOX2a(2)                   <-----------GT1 ------->ANAC58 <----------DOF2   <---------TOE2(3)                       --------->AHL20(2)        - ------->ANAC58<---------ANAC58  --------->YAB1                       --------->ICU4       <---------TOE2(3) ------>DOF2   <---------ANAC58<---------YAB1 ----------->GT1    ----------->GT1    <----------------   aaagcaagcaaatgatggctttcaattatagctattaatgatcttcacaagtgaaaatttcgctatcttgtaacaattaactactagactcttgaggtaa  23437700                                                                                          -----------                                                                                          <----------                                                                                          <----------DOF2                                                                                         <-----------                                                     <---------WOX13(1)              <---------DAG2                                                   --------->ATHB12                -------->P                                                  <---------YAB1                   ------>MYB46(1) --------->CCA1(2)                          --------->ARR11(3)                     ------>MYB83  ---- =MADS_MADS                                 --------->AHL20(1)                   --------->AtMYB61 -------->ARR11(1)     <-----------GT1      <---------AHL20(1)                  --------->MYB46(3) -AG           ---------->DOF2             --------->AHL20(2)       --------->AHL20(2)   <-----------   tagatatgatgttccctcaaagtatttacaacttaacttagataaatatatagtgattgaatacaaacaaaaaaatagacaaaccaacctttctttttct  23437800  Previous    Next  AGI:  At3g63445.1    Description:  other RNA Range:  from: 23433753    to: 23437337    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g63440.1    Description:  ATCKX6/ATCKX7/CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6); cytokinin dehydrogenase. similar to ATCKX1/CKX1 (CYTOKININ OXIDASE/DEHYDROGENASE 1), cytokinin dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G41510.1); similar to hypothetical protein OsI_019040 [Oryza sativa (indica cultivar-group)] (GB:EAY97807.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40733.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23642.1); contains InterPro domain FAD-binding, type 2; (InterPro:IPR016166); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain FAD-linked oxidase-like, C-termin Range:  from: 23435132    to: 23437511    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g63450.1    Description:  RNA binding. similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G51950.1); similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G51950.2); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14273.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 23437724    to: 23439839    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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