Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------At4g35610                                                                                    <-----------HVH21                                                                                    ------>ZmHOX2a(1)                                                              <---------LBD16    ------>NtERF2                                                             --------->ALFIN1   --------->ARR14(2)                                                            <---------SPL7      <---------ARR14(2)                                                           <---------bZIP60(2) --------->ATERF1(1)                                                           <---------ANAC58   <---------ATERF1(1)                                                <-----------TBP<---------ANAC46<------NtERF2                                      --------->ANAC58     <---------ANAC58  <---------DEAR3(1)                                      --------->ANAC58     <---------O2<---------ALFIN1 --------->At4g35610                                     ------->TEIL          <---------TGA1a  --------->LBD16                                    --------->MYB52(1)     <---------ANAC46 <---------LBD16                                  <---------MYB52(2)      <-----------------------TaNAC69(2)        --------->ANAC46    --------->YAB1    --------->AHL20(2)--------->LBD16<---------At4g35610      --------->REM1(1)    <---------ATHB12  <---------YAB1<---------ANAC55(1)------>NtERF2 <---------ZAT6        ------------>CBF   <---------YAB1 <---------TGA2(2) --------->ANAC46 --TOE2(3)            <-----------HVH21   --------->ICU4----------->HVH21 <---------LBD16 --TOE1(3)---------->DOF2--------->WOX13(1)--------->ATHB12--------->TGA1a--------->MYB46(3)        <   ttagtgctacaccaaagaagaacatgtcaatcaaaaacgaacgcatgattatatatagatgacgtgcggagacacacccgcggctccttcagctctattc  23412700                                                                       --------->TOE2(3)                                                                       <---------DAG2                                                                       --------->TOE1(3)                                                                     -------->P                                                                     ------>MYB83       <---------AHL20(2)               --------->DAG2               ------>MYB46(1)      <---------AHL20(1)               ---------->DOF2          <-----------GT1  ------>ZmHOX2a(1)      --------->AHL20(2)      <---------ANAC58              <---------YAB1     ------>ZmHOX2a(2)      <---------AHL20(2)      <---------ANAC58            --------->AHL20(2) --------->ARR11(3) <---------MYB52(1)           <---------ANAC46            <---------AHL20(2) <---------ARR11(3) -------GAMYB                 <---------ANAC55(1)       <---------WOX13(1) <---------YAB1   tccgttaattaatttctccttgaaacccgattacttgtgaataaagtaatcttctctgatttatatttgccaaccttatgatcctgatgtttttgggttt  23412800                                        ------>ZmHOX2a(1)                                   <---------TGA1a                                   --------->ANAC58                                   --------->ANAC46                                   --------->TGA1a                                   --------->bZIP60(2)                                         <-----                                   --------->ANAC58    <---------MYB52(1)                     <------                                 <---------ALFIN1   ------>ZmHOX2a(2)                         <------                  <---------YAB1<---------REM1(2) <---------ARR11(3)                     --------->STY1(1)             <---------DAG2    <---------ALFIN1   --------->ARR11(3)                 <---------PCF2             <----------DOF2  <---------ZAT18  <---------TOE1(2)                --------->MYB52(1)             ================================bZIP_DOF----------->GT1           <---------ARR14(2)          <-----------GT1 --------->SPL7===================HOX2a_HOX2a         --------->ARR14(2)  <-       --------->YAB1    <---------MYB52(1)    <---------TOE2(2)          <-----------GT1<---------STY1(1)   aagcgtttagaataacttttttgattcgttcgtccacacgtccttatcgtatgatctgttaatttgatatgcatatttacagaaacgggccctagtgctt  23412900                                                               --------->LBD16                                                              --------->ANAC58                                                              --------->ANAC58                                                             <---------------AGL15                                                          <---------WRKY18(1)                                                         ----------->HVH21                                                       <---------ANAC58                                                       <---------ANAC58                            -- -----DOF2                                      <------ZmHOX2a(2)   ----------->GT1           XXXXXXX ---ANAC58                                    --------->At4g35610   <----------ID1            ------- ---ANAC58                                <-----------HVH21  --------------->AGL15        <---------LBD16 --------MYB46(3)            <-----------GT1  <---------At4g35610 ---------->DOF2  ----------->GT1 --   gttgttgaatatgggcctggtctggcccatattactatctcagaagtcagatcagaagcttgacccgaaaaagaaaaaaacgagagagataattcggaaa  23413000                                <---------WOX13(1)                               <------------CBF                              --------->ATHB12                             --------->ICU4                             <---------YAB1                           --------->YAB1                              --------->YAB1                        --------->YAB1                             <---------MYB46(2)                       --------->ICU4                              <---------MYB111(1)         <---------ATHB12 <---------YAB1                       --------->At5g28300     ------------>CBF  <---------YAB1                         ----------->GT1 ------->ANAC58      --------->YAB1                         <---------LBD16 XXXXXXXXXXXXX>MIR2112-5P --------->ICU4       --------->TOE2(3)   <---------MYB52(2) -->ARR14(2)        <---------ATHB12------------>CBF    <---------ARR14(2) ------->ANAC58     --------->ICU4 <<<<<<<<<<<<<<<<<LFY --------->ARR14(2)                       ----   cacgaacaccaatggtttaccgatgatgatgatgattggacaatggctacataaatggaatacgcggtaactaacatgagactactgagtaacatgatgt  23413100                                                                   <------NtERF2                                                                  --------->LBD16                                                                 <---------ANAC46                                                               --------->MYB52(1)               <---------ANAC58                               ------>ZmHOX2a(1)      <---------DEAR3(1)                                    ----------->RAV1(2)            <---------ATHB12  <---------At4g35610                            ----------->RAV1(1)   --------->GLK1(1) --------->WOX13(1)  --------->At4g35610       <-------TEIL         =======================RAV      ----------->RAV1(1) --->TEIL      <---------ANAC58                 <---------ETT(1)<---------LBD16 <---------ETT(1)   actctgcttcggcgatttcgtttccaagggttcgtctgcattgtagtattccgacagagccatcctgccggagaaacccattccgacagagcaatcagcc  23413200                                                                       <------NtERF2                                                                       --------->At4g35610                                                                       <---------At4g35610                                                                     <---------WRKY12                                                                    --------->TGA2(2)                                                                   <-----------HVH21                                                                  --------->ANAC58                                                                  --------->TGA1a                                                                  ===================================                                                     ----------------------->TaNAC69(2)                        <---------TOE1(2)          =========================bZIP_DOF                       <---------ANAC58    >>>>>>>>>MYB1          <---------TGA1a                  <---------ZAT2           >>>>>>>>>MYB2          --------->bZIP60(1)                  --------->ZAT2          --------->MYB52(1)      --------->ANAC58               --------->LBD16           ------>ZmHOX2a(1)       --------->SPL7              --------->ANAC46  <---------LBD16    <----------DOF2--------->ANAC46               <---   --------->ANAC46    <---------ANAC58 <---------MYB59   --------->MYB46(3)         --------->ZAT14   cgtccaagtcccttctccgaagctcgcttgtttcgacggagtcctaactgaagcttttcaacggctggacgtcagcgaaaacaactctccagtcgaagcc  23413300                                                              <---------LBD16                                                        <-------TEIL                                                     <------NtERF2                                                     --------->At4g35610                                                     --------->ZAT2                                                     <---------ZAT2                                                  <------NtERF2                                                  --------->ATERF1(1)                                                  <---------At4g35610                                                 <---------DEAR3(2)          <---------HSFB2a(2)                    <---------ATERF1(1)          --------->HSFB2a(2)                   --------->ETT(2)    <---------TOE1(2)            <---------At4g35610 <---------At4g35610                          <-- <---------ANAC58                --------->At4g35610<---------ATERF1(1)                          <--- <---------ANAC58        <---------DOF5.7(2)    <---------DEAR3(1)                               ---- =======bZIP_DOF        <---------WRKY12       <---------ORA47(1)                     <----------DOF2 -------DOF2    <----------DOF2 <---------AGP1 --------->RAP2.6(3)           <----------DOF2     <---   tttgcctacgttctcgagctttgtggtaaacgtagagctgtctcacaaggtcggcagctgcattcgcgcattttcaagactttcccctctttcgaattag  23413400             <---------ZAT2            --------->ANAC58            --------->ANAC58         <------NtERF2        --------->ANAC58        --------->ANAC58        ------>NtERF2        <---------RAP2.6(3)       <---------DEAR3(1)                   <---------LBD16       --------->RAP2.6(2)            --------->LBD16                                            ----       --------->ATERF1(2)           <---------ANAC58                                --------->ARR14(2)       <---------ATERF1(2)           <---------ANAC58                                <---------ARR14(2)      <---------ORA47(1)            <---------LBD16                                 <---------ZAT14      --------->RAP2.6(3)          --------->ALFIN1 <---------ANAC46             <<<<<<<GRF7    <----      <---------LBD16          <--------P<---------GLK1(1)                      --------->MYB52(1) -------RVE1(1)               --------->At5g28300 <---------TGA2(2)            ----------->HVH21<---- ------ARR11(3)            ------->TEIL  --------->GLK1(1) ---------->DOF2   <---------ANAC58   <---- ----->ARR11(3)        <---------------AtSPL3    ----------->TGA1            <---------ANAC58   <---- ------GLK1(2)         <---------------AtSPL8    ----------->HVH21   <---------TOE2(3)      <--------   attttttggccggcaagcttgtttttatgtacggtaagtgcgggtctctggatgacgcagagaaagtgtttgacgaaatgcctgacagaactgcctttgc  23413500                                                                              <---------DEAR3(1)                                                                             <---------ANAC46                                                                          --------->ALFIN1                                                                         --------->REM1(2)                                                                        --------->ALFIN1           <---------WOX13(1)                                         <---------ANAC58         --------->ATHB12                                             <---------ANAC46        <---------YAB1                                                <---------ANAC58 ----->LBD16                                                      --------->KAN4(1) -----ANAC58                                                      <----------TaMYB80           <----- -----AtLEC2                                                     <---------KAN4(2)             ------ -----ANAC46         <---------YAB1                          --------->HSFB2a(2) <---------ANAC58 -----ANAC58    <---------At4g35610 ------->TEIL             <---------HSFB2a(2) <---------ANAC58   - --DOF2 --------->ICU4         ----------->GT1<---------At4g35610---------->TaMYB80    ------>ZmHOX2a(1)   gtggaataccatgattggagcttatgtttcgaatggtgaacctgcttccgctcttgctctctactggaatatgcgtgtggagggcgttcctctcggtctt  23413600  Previous    Next  AGI:  At3g63370.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G57430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22603.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62238.1); similar to hypothetical protein OsJ_014524 [Oryza sativa (japonica cultivar-group)] (GB:EAZ31041.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23413055    to: 23416966    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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