Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           ------>NtERF2                                            <---------ZAT2        <---------ETT(1)                                          <---------At4g35610        ----------->HVH21                                         --------->At4g35610    <---------ZAT2                                              <---------WRKY12    --------->ZAT2                                       ----------->RAV1(2)             --------->YAB1   --------->ANAC58                                     --------->ARR11(3)            --------->WOX13(1)   --------->ANAC58                        --------->ATHB12     <-----------RAV1(2) <---------ATHB12 -------->WRKY18(1)                      <---------WOX13(1)   <-----------HVH21------>MYB83 ----------HVH21                      <---------YAB1    <---------ARR11(3)     ------>MYB46(1)   tcgtcaagctccgacatggattgtgccagtttttggtattcagattgattcgaaacaacatctgggtcagctagtttcacctacaaatcattcaaaactc  23271000                                                                                                 ----                            --------------->AGL15                                               -----                            <---------------AGL15                                              ------                           ==========================================================================                           <-----------------AGL3                                              <-----                           <-----------------AGL2                                              ------                           ----------------->AGL2    --------->MYB52(1)                        <-----                           ----------------->AGL3  --------->MYB46(3)                          ------                      --------->TOE1(3)            <---------MYB52(2)             --------->MYB46(3)                      --------->TOE2(3)    --------->ALFIN1                      <---------At4g35610                 <---------MYB52(2)        <---------REM1(1)                     --------->At4g35610            <---------TOE2(3) <---------YAB1    <------ZmHOX2a(1) ------>ZmHOX2a(1)------->GAMYB<----   ttaagaatgagattaagaaacaaaccttaaccattaatggaataagtgtaggaacaaaccgataactccttccatgtcttctcaacagactccattttcc  23271100             --------->TOE2(3)        --------->HSFB2a(1)        <---------HSFB2a(1)       <---------TOE2(3)       --------->MYB59       --------->DAG2       <---------TOE1(3)  <---------TOE2(3) -->ZmHOX2a(1)------>ZmHOX2a(1) ---------->AGL15 ----------->AGL2 ============MADS_MADS ------------AG ----------->AGL1                 <---------ARR11(3)                                             ---- ------------AGL1          ------->GAMYB                                <<<<<<<<<<<<<<<<<LFY     <--- ----------->AG           --------->MYB46(3)                            ----------->RAV1(1)      ---- -----------AGL15        <---------At4g35610                     --------->AHL20(2)             -----   taatgaggtaaggttcctaaatgtttcaacagacaaaatcatcgaacaattctgaaacttttgaaaaaaaaatccaacattgggagaactagaatcactt  23271200                                               <---------O2                                               --------->bZIP60(2)                                               --------->O2                                               --------->TGA1a                                               <---------TGA1a                                               --------->ANAC46                                               =======================================bZIP_DOF                                               =======================================bZIP_DOF                                               --------->ANAC58                                               --------->ANAC58                                           --------->ATERF1(1)                                           <------NtERF2                                           ------>NtERF2                                          --------->RAP2.6(2)                           --------->DAG2                                          <---------RAP2.3(1)                          ---------->DOF2                                          ------>NtERF2                        --------->HSFC1(1)                                         <---------DEAR3(1)                    --------->HSFB2a(2)                                        --------->ATERF1(1)                    <---------HSFC1(1)                                        --------->RAP2.6(3)                    <---------HSFB2a(2)                                      --------->DAG2                       ==========================    --------->AtLEC2                 ====================bZIP_DOF          <----------DOF2        --- ----->SPL7                          ---------->DOF2                  --------->At5g28300         --- ------At5g28300         ------>ZmHOX2a(1)<---------ATERF1(1)        ----------->GT1--------->ANAC58 ----->RAP2.6(3)        --------->TOE1(2)<---------RAP2.6(2)        <---------DEAR3(1) ============== ---->MYB52(1)   <------NtERF2    <---------HSFB2a(2)           <-----------RAV1(2) --------->ANAC58   acggccatacaaacgagtcgtcgagtcctgcgagaccgagaaggcggccacgagactagacaaactccagacggtgactttctcgaacgtaaagtgaatg  23271300           <---------REM1(1)        --------->ICU4 <---------ANAC58 <---------ANAC58                                                                                   < <---------ANAC46                                                                                   - <---------TGA1a              <---------MYB52(1)                                                   -- <---------bZIP60(2)        <---------MYB46(3)                                                     <- <---------O2      <---------HSFB2a(1)                                                            <-- ==========bZIP_DOF--------->HSFB2a(1)                                                            <-- -------->HVH21    --------->HSFC1(2)    <-----------TGA1                                      ------ -------->TGA1<---------TOE2(3)          <-----------HVH21                                   -------- ==========bZIP_DOF<---------HSFC1(2)  ---------->ID1  --------->ATHB12          --------->ALFIN1 <--   gtgacgagtgaagatgaaggaaggctcgagccgttggactcgtcgtcatcgagctattcattgtctagactctagagagagaggtggaagaagacgagtg  23271400          =================================================================================MADS_MADS          --------------->AGL15          <---------------AGL15         <-----------------AGL1         <---------ANAC58         <---------ANAC58     ==============================================MYC_MYB                      <---------HSFB2a(2)     <---------At4g35610                                                      --------->YAB1     <-------GAMYB                         --------->ALFIN1                   --------->AHL20(2)    --------->MYB52(2)                   <---------ANAC58                    <---------ATHB12  *TSS   <---------ANAC46                --------->TGA1a                     <---------ATHB51 --------->LBD16                         <---------ANAC46                 --------------->AGL15 ------NtERF2                            <---------O2                    ----------------->AGL2 -------->ATERF1(1)                      <---------ANAC55(2)             ------------>CBF ---->NtERF2                             =====================bZIP_DOF   ----------------->AGL3 --------LBD16                           <---------ANAC58              --------->ANAC58 -------ANAC46    <------ZmHOX2a(1)      --------->O2    <------ZmHOX2a(1)<---------------AGL15     < -------ANAC58  --------->ANAC58         <---------ANAC55(1)           --------->ANAC46            -- --->ALFIN1     <---------TOE2(3)        --------->ANAC55(2)           --------->ANAC58            <- ->ALFIN1<-----------------AGL2<---------At4g35610 <----------DOF2--------->ARR14(2)              <-- -------ANAC58  --------->ANAC58         <---------TGA1a<----------ID1------>ZmHOX2a(1)     <--------   gcgcgggagttgctggataaggaagcctagtttagatgatgagacgtgtttggctattaggacaaaactatcctcgccaattatagaagaaaccctttta  23271500         <---------MYB52(1)                                       --------->ZAT6 ------------CBF                      <---------REM1(2)----------->RAV1(2) ------->ATHB12                     --------->ARR14(2) <---------At4g35610                      ----- --------AHL20(2)                  <-------GAMYB     <---------ALFIN1                   <---------ARR11(3) -------AHL20(2)                   <-----------HVH21 --------->REM1(1)                  <---------AHL20(1) --DOF2 <----------DOF2  <-----------GT1 --------->ANAC46       <-----------GT1    ------------>CBF   tttattgggcctttagcccatactaatttacattctcggttacacggtgtaacttacacctgctagtaactctatgggcctatggcccaatatatgtgaa  23271600                                                                                     <------NtERF2                                                                                   <---------DEAR3(1)                                                                                   ----------->HVH21                                                                                   --------->DEAR3(1)                                                                                  --------->ATERF1(1)                                                                                 ------>NtERF2                                                         <---------SPL7          --------->LBD16                                           <---------ATHB12                      <---------ATERF1(1)                                        <---------AHL20(2)        <---------ARR11(3)------>NtERF2                                        --------->AHL20(2)  --------->ANAC58    <---------DEAR3(1)              <---------HSFB2a(2)    --------->YAB1    --------------->AtSPL8  <---------LBD16       <---------GLK1(2)             *TSS--------->WOX13(1) --------->ANAC58  ======================= ------>GT1   --------->HSFB2a(2)   <---------AHL20(2)<---------LBD16         ------>ZmHOX2a(1)  <---   gtcaaaactgattcgtcgcgaagttgagtttttgttaaataataaatcaattgaatcgcggtactcaatttcttctcttcctccggcgacgatgtcgatt  23271700                                    <---------TOE1(3)                                    <---------TOE2(3)                <-----------GT1 ------>ZmHOX2a(2)              <---------DAG2   <------ZmHOX2a(2)           <---------ARR11(3) --------->ARR11(3)     ------>ZmHOX2a(2)        <---------ARR14(2)   <---------ARR14(2)         --------->ARR14(2)   --------->ARR14(2)      --------->LBD16  <------ZmHOX2a(1)       <---------LBD16  =====================================HOX2a_HOX2a  ====================================HOX2a_HOX2a                      <---------At5g28300 ===========HOX2a_HOX2a  <---------LBD16   >>>>>>>>>>>>>>>>>LFY       <-----------GT1            ---- --------GT1  <----------DOF2 <---------ARR11(3)              --------->ATHB12  <---------YAB1 <-----   tacaggatcgctagagctttacccttctccgggatcttaaggtttctccattgttttcttctcttcattgtattactgcgttactattgaagaattgact  23271800                                                  <---------ANAC58                                                 <---------ICU4                                           <-------GAMYB                                          <------MYB46(1)                                          <---------MYB46(3)                                          <------MYB83                                          ----------->GT1                                     <---------TOE2(3)                                     <---------TOE1(3)                 ----------->HVH21                                <----------DOF2  --------->ATHB12     --------->SPL7           <-----  ---------->DOF2            <---------ARR11(3) <---------YAB1      --------->LBD16            ------ ------->GT1            <---------ATHB12<--------P<---------ANAC58<---------LBD16          ---------- ----WOX13(1)    <---------CCA1(2)   --------->MYB59            <-----------GT1           --------->AHL20(2)   gataaaaagaattcaatttgtatccaatctagagctttttaggttggttaatgcttgcatcgtatttctccgtatgacaagagattacacaataaaagat  23271900  Previous    Next  AGI:  At3g62910.1    Description:  APG3 (ALBINO AND PALE GREEN); translation release factor. similar to peptide chain release factor, putative [Arabidopsis thaliana] (TAIR:AT2G47020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22401.1); contains InterPro domain PCRF (InterPro:IPR005139); contains InterPro domain Class I peptide chain release factor; (InterPro:IPR000352); contains InterPro domain Peptide chain release factor 1; (InterPro:IPR004373) Range:  from: 23268529    to: 23271402    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g62920.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN74119.1) Range:  from: 23271637    to: 23272268    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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