Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              ------>ZmHOX2a(2)                     --------->At4g35610                                  <---------ARR14(2)       --------->TOE1(2)                                       --------->ETT(2) --------->ANAC58       --------->TOE2(2)                                    <---------REM1(1)   --------->ANAC58      --------->HSFB2a(1)                              <-------GAMYB      --------->ARR14(2)      <---------HSFB2a(1)              <---------TOE2(3) <---------MYB46(3)<------ZmHOX2a(2)     ------->TEIL    <---------At4g35610          <---------ANAC58        <---------ARR11(3)     --------->ARR14(2)              ---------->DOF2  --------->ALFIN1    --------->ARR11(3)    --------->ARR14(2)       --------->ANAC46     <---------ANAC55(1)    <---------At4g35610    <---------ARR14(2)       --------->ANAC58     <---------ANAC46  ----------->HVH21 >ARR11(3)         <-----------RAV1(2) --------->DAG2 <-----------RAV1(1)--------->At4g35610  ------>NtERF2 -ARR11(3)    --------->DAG2 --------->ANAC58     <---------ANAC58--------->ANAC46   ----------->ARR10   agtgccgaacctgcgaaaggctcagttgaataagccagaaaaaggttgtatttcgtgtgttgttgtagacgggacagatcccaagcgaagacatgctgcc  23249700                                                 --------->ANAC58                                                 --------->ANAC46                                            --------->ANAC58                                            --------->ANAC46                                            --------->ANAC58                                          ------>ZmHOX2a(2)                                        <---------ARR14(3)                                        <-----------ARR10                                        <---------ARR11(3)                                        --------->ARR14(3)                                        --------->ARR14(2)                                        <---------ARR14(2)                  <---------YAB1 ===============HOX2a_HOX2a                <---------ICU4   ================HOX2a_HOX2a                --------->ATHB12 <------ZmHOX2a(1)      --------->ZAT14               <---------YAB1 <------ZmHOX2a(1)<---------ALFIN1             --------->YAB1   ===================HOX2a_HOX2a                             <-------GAMYB       --------->CCA1(2)      ==================HOX2a_HOX2a                         <----------DOF2      <---------ARR14(2)   <------NtERF2--------->ARR11(3)                     <---------At4g35610      --------->ARR14(2)  --------->LBD16<------ZmHOX2a(2)                     --------->At4g35610   ==================================HOX2a_HOX2a --------->ANAC58             <---------ARR14(2)   =====================================HOX2a_HOX2a     <---------ZAT18       --------->GLK1(2)     <   ------>ZmHOX2a(2)    <---------LBD16 <---------AGP1<---------At4g35610     --------->ARR14(2)    <   actgatcggatacgagcatcattgtagccggaggaggattaagatctcgccactccagcatactcgaatacatgagtgagcatctgctttctgttgaaat  23249800                                 --------->ZAT6                            --------->STY1(2)                            --------->ZAT2                            <---------STY1(2)                            <---------ZAT2                                       --------->ATHB12                           --------->ANAC58                                     <---------YAB1                           ------>MYB46(1)                                 --------->LBD16                           --------->ANAC58                              <---------LBD16      --------->ARR11(3)   ------>MYB83        ---------->DOF2          -------->P                  < ---------ANAC58      <-----------GT1       --------->AtLEC2          ----------->HVH21           <-- ---------ANAC58    <---------AHL20(2)   <-------TEIL <------ZmHOX2a(2)--------->MYB52(1)         ---   tgacttgagatgttgttcaaatttaaaccaagctagcactaaattcattcaaagagatcgatagcaattggactaaccgggtatgatttgtgctacagcg  23249900                           ----------->HVH21                          ------>ZmHOX2a(2)                         <---------At4g35610                         --------->At4g35610                         <------ZmHOX2a(2)                        --------->ARR11(3)                        <---------ARR14(2)                        --------->GLK1(2)                        <---------ARR11(3)             <---------ZAT18             --------->ZAT18                                          --------->CCA1(2)    --------->ALFIN1    --------->ARR14(2)                   ----------->HVH21  --------->LBD16       <---------AGP1                     --------->LBD16                        --- ---------LBD16        <------ZmHOX2a(1)                 <---------LBD16 <------ZmHOX2a(1)        --- -------ARR14(2)     <---------TOE1(2)             <---------YAB1 <---------------------WRI1      --- ------>ARR14(2)     <---------TOE2(2)     <----------DOF2<---------DEAR3(1)               --------->ATHB12   actccggtggaagagagccctcgcaggatctgacaaggggtttctctttggtcaccatagccggtgatggagataggaccagagtagcctagttcattga  23250000                                                                         --------->ANAC46                                                                         <---------ALFIN1                                                                        <---------ZAT14                  <---------SPL7                                        --------->ZAT14                 --------->ANAC58                                      <---------ALFIN1    <----------DOF2                        <---------HSFB2a(2)         --------->AtMYB61  <---------At4g35610                  ------->GAMYB                  --------->ANAC46        <------  ------>NtERF2  --------->ANAC58   <-----------GT1                   --------->MYB46(3)     <------- --------->DEAR3(1)   <-----------RAV1(2)  --------->HSFB2a(2)      <---------ALFIN1         <------- ------>ANAC58  --------->SPL7   --------->YAB1                  --------->PCF2       --------->At4g35610 ------>ANAC46<---------SPL7  --------->YAB1                    <-----------HVH21     <---------At4g35610 ------>ANAC58----------->HVH21 <---------YAB1             ------>ZmHOX2a(1)        <-----------GT1   acgccgcttctatgctcggacggaccagacgagcatcataaccctctggaatcggacagtccttcatgtcccaccacacagctattttagctctcgcgta  23250100                     <---------ARR14(2)                     --------->ARR14(2)                  <---------ANAC46                 <------NtERF2                --------->LBD16                ------>NtERF2               --------->LBD16              <---------LBD16           --------->ATERF1(1)           <---------ALFIN1          <---------At4g35610                                               ---------->DOF2          --------->ABI4(1)                                           <---------ICU4          --------->At4g35610                                      --------->YAB1      >>>>>>>>>MYB98     --------->ATERF1(1)            --------->TOE1(3)              <--------ATHB1     ------>MYB46(1)    <---------ATERF1(1)             <---------MYB59               <---------ATHB12    ------>MYB83 ---ZAT18 <---------ATERF1(1)       --------->TOE2(3)             --------->ICU4      --------->MYB52(1) --ANAC58 ------>NtERF2             --------->AtMYB61            <---------------------WRI1      <XXX --ANAC58--------->DEAR3(1)  ------>ZmHOX2a(1)                ------------>CBF      <---------MYB59   ctcaggcttcgccgctcccggcgtatacatcctctcaacctaaactaaattcacagacacaagagtcaatgatttttacaaagaaacctaacttattcaa  23250200         <---------ANAC58                                                                          <-         <---------ANAC46                                                                         <--         <---------ANAC58             --------->ANAC58                                           <---  --------->CCA1(2)                   --------->ZAT6                                            <---- <---------ARR11(3)                   --------->ANAC58<---------ANAC46                          <---- --------->ARR14(2)              --------->At4g35610  <---------ANAC58                   ------------ --------->ARR11(3)   <---------TOE2(3)               --------->ANAC55(2)             ----------->GT1 <---------ARR14(2)   <---------TOE1(3)               <---------ANAC58               --------->ALFIN1 XXXXXXXXXXXXXXXXXMIR866-5P <-----------GT1        <----------DOF2       <---------HSFB2a(2)    <----   caagatatgtttcttgaagaaattagggttttacctgctaacgctaaatcccgctttcgtgatgaagaagggactcgagaaaatcaagtggtacaatggc  23250300         --------->At5g28300        ----------->GT1 ---------DOF2                <---------AHL20(2) -----GAMYB                   --------->ATHB12                                      --------->GLK1(2) ------MYB46(3)      --------->ZAT18                                               <---------GLK1(2) -----DEAR3(1)       <---------ZAT18                       <---------AHL20(2)      --------->ARR14(2) -----RAP2.6(2)  <-----------GT1           <------ZmHOX2a(1)          ----------->TBP >CBF  ----------->GT1       <---------AHL20(2)           --------->AHL20(2)     ----------->ARR10 -----ANAC46    ---------->DOF2<------------CBF  ---------->DOF2 <-------TEIL  --------->LBD16   ggtttaagaggggtaaatttaagcccacttatttattgggcctgaggagactaaagcccattaaatattcatatataagtccagagattctcttccttca  23250400                           <---------ANAC46                <---------REM1(1)              ------>ZmHOX2a(2)                                                               <------ZmHOX2a(1)             <------ZmHOX2a(2)    ----------->GT1                                           <--------            --------->ARR11(3)    <---------ANAC58                                --------->MYB55(2)            <---------ARR11(3)    <---------ANAC58                                <---------MYB46(3)        ---------->DOF2 <---------MYB52(1)                                     <---------MYB46(3)    ---------->DOF2 <---------At4g35610--------->REM1(1)    ------->TEIL      <---------AtMYB61   aacatgtaaagaaagatcgtgtagctgttttgtgtttcgttacaacttacaagaagtctatgtattttagtttggacacgatggtggtttgatttaggaa  23250500                                                                       ------>MYB46(1)                                                                       --------->MYB52(1)                                                                       ------>MYB83                                                                     --------->AtMYB61                                                                     --------->MYB46(3)                                                           <-----------ARR10                                                           <---------AGP1                                                           <---------ARR11(3)                     ---                                                           --------->ARR14(2)                  ------                                                           <---------ARR14(2)               <--------       <---------------AtSPL8                 --------->YAB1 ------>ZmHOX2a(2)            --------->AHL20(2)  ------->TEIL            --------->GLK1(2)   <--------HAHB4--------->CCA1(2)             <---------AHL20(2)  --------->GLK1(2)      <---------GLK1(2)    <---------ICU4<------ZmHOX2a(2)      <---------ALFIN1  <---------ARR14(2)     --------->ARR14(2)  <---------YAB1--------->AGP1          --------->AtMYB61  --------->ARR14(2)     <---------ARR14(2) <-----------GT1--------->ARR11(3)     --------->MYB46(3) -TOE2(3)         --------->AHL20(2)   <XXXXXXXXXXXXXXXXXXXXMIR418   <---------MYB59----------->RAV1(1)   aacgaatctgaagtacaaaataaaacagattcttctctgtttagtttatcattacatagaagatctatggaccaaacgacgtccaccaccatttaaacca  23250600  Previous    Next  AGI:  At3g62850.1    Description:  zinc finger protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40196.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Protein of unknown function DUF537 (InterPro:IPR007491) Range:  from: 23248462    to: 23250130    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g62860.1    Description:  esterase/lipase/thioesterase family protein. similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT2G47630.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40021.1); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) Range:  from: 23250421    to: 23253226    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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