Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------MYB52(1)                                                                     --------->DOF5.7(2)                                                                    --------->At5g28300                                                                    <---------RAP2.6(3)                                                                   ----------->GT1                                                               --------->DAG2                                                           --------->ANAC46                   -------       ------>ZmHOX2a(1)                                   --------->ANAC58                   <------       --------->LBD16                         ---------->ID1 ---------->DOF2         --------->At5g28300 ------DOF2                      <------ZmHOX2a(2)         --------->ANAC58          ----------->GT1< >ZmHOX2a(2)                    --------->ARR11(3)     <---------ANAC58   <---------AHL20(2) -------- --ARR11(3) ----------->GT1     <---------ARR11(3)     <---------ANAC58   --------->AHL20(2) -------- ->ARR11(3)*TSS    --------->AHL20(2)      <---------MYB52(1)---------->DOF2         ------->GAMYB  < >YAB1 =================================HOX2a_HOX2a  <-----------GT1<-------GAMYB --------->MYB52(1)<   ttctaaatcctgaattgaaaaataaacaagaacagatcatatacagtttgtttttttacttacgaaaggccgttaattaatctccaacggtaaaaatatc  23211700                                                                                      --------->ANAC58               <------MYB46(1)                                                        --------->ANAC58               <------MYB83                                                     --------->At4g35610              --------->ALFIN1                                             <---------ANAC46              <---------MYB46(3)                                           <---------ANAC58       --------->YAB1                                                      <---------ANAC58 -->ARR11(3)  <---------DEAR3(1)            ----------->GT1             <---------MYB52(1) ---ARR11(3) <--------P     <-----------GT1--------->ANAC58            <-------GAMYB  --------->ANAC46 ---------ANAC58  --------->ZAT18          --------->ANAC58       --------->LBD16   <---------ALFIN1 ->CCA1(1)   <---------MYB52(1)          --------->MYB52(1) <---------AHL20(2)  <---------ZAT2 ->RVE1(1) <---------MYB46(3)     ------->GAMYB  --------->YAB1 <---------LBD16 <---------At4g35610 ---------ANAC58  <---------ZAT18--------->MYB46(3)        <---------AHL20(2) --------->ZAT18 ---------ANAC46<------NtERF2  ----------->RAV1(1)         --------->AHL20(2) <---------ZAT18   tagcgtctataatcggttggcgcactaaatttacaacagacaaaaacggaaacataactaatttaatccggacagttgtgtgagctccaagccagtcgtt  23211800                          --------->MYB52(1)               <---------DDF1                      --------------->AGL15                <---------RAP2.6(3)                      <---------------AGL15                ------>NtERF2                     <-----------------AGL1                ----------->RAV1(1)               ------>MYB83                  <----------DOF2               <---------MYB52(1) --------->ATHB12          ------>MYB46(1)                  <---------DAG2               --------->LBD16    <---------AHL20(2)       --------->AtMYB61             -------->P   <---------DOF5.7(2) --------->ANAC55(2) <---------YAB1           <---------MYB59             <---------At5g28300              --------->ANAC46   --------->AHL20(2)        ------->GAMYB            <-----------GT1            <---------ICU4     --------->RAP2.6(2)             --------->MYB46(3)          <---------MYB52(2) ------->GAMYB<-----------GT1 --------->DREB2C(2)            -------->P     <-----------GT1 <-----------------AGL2  <---------LBD16     <---------AHL20(2)     --------->WOX13(1)   ttctgtttaacaacttaccgctttctgttaacggaaaacaaaaattacccgtgatttaggccgacattttaattgggcttagattgttatcaaccaaaca  23211900                                                                              <---------SPL7                                                                              <------NtERF2                                                                              --------->ABI4(1)                                                                              ------>NtERF2                                                                             --------->RAP2.6(2)                                                                             --------->RAP2.3(2)                                                                             --------->RRTF1(2)                                                                             --------->DEAR3(1)                                                                            --------->ATERF1(1)                                                                            --------->ANAC46                                                                           --------->At4g35610                                                                           <---------ATERF1(1)                                                                           ------>NtERF2                                                                          --------->ANAC46                                                                         ------>ZmHOX2a(2)                                                                         --------->MYB46(3)                                                                       <---------ARR14(2)                                                                 <---------ZAT14                                                                 <---------REM1(2)                                                                 --------->ZAT14                                                               --------->ANAC46                                                             --------->ZAT6--------->LBD16                         --------->AHL20(2)         <---------ZAT6     --------->ARR14(2) <----------            <---------YAB1 <---------CCA1(2)  --------->ZAT6 <-----------GT1--------->RAP2.3(1)    <-        <---------GLK1(2)<---------AHL20(2)<-----------GT1 <-----------GT1--------->DEAR3(1)   <-----   aatgggcttagattattaaggcccaatttatatctgaagagtgttttaccactagtgtttttttcactacactgatccgccgcaccaagttttaacgcgt  23212000                                                                 <---------AHL20(2)                                                                 --------->AHL20(2)                                                                 --------->AHL20(1)                                                                 --------->ARR11(3)                                                                 <---------ARR11(3)                                                                 <---------AHL20(1)                                                                --------->AHL20(2)                                                            --------->AHL20(2)                                                            <---------AHL20(2)                                                         <---------AHL20(2)                                                        --------->AHL20(2)                                                        <---------AHL20(2)                                                    <---------AHL20(2)                                                    <---------YAB1                                                   <---------AHL20(2)                            ----                                                --------->AHL20(1)                              <---- -GT1        --------->ANAC58                   --------->ARR11(3)           <---------ANAC58 ------- --------HSFB2a(2)        ----------->HVH21     <---------AHL20(1)           <---------ANAC58 <------ ------HVH21 --------->ANAC58                   <---------ARR11(3)<---------AHL20(2)         *TSS<---   cccagacagacaggcaggcatgttctgtctgacatttccaaaaattcaaatatttttattaaataaatatattttgtttacttgtttaatccaaatttaa  23212100                                                                                                <----                                                                                              -------                                                                                              -------                                                                                             --------  --------->ATHB12                                                                          --------- <---------YAB1                                                                        ----------->GT1 ----->ARR11(3)                                                  <---------TOE2(3)     --------->ANAC46 -----CCA1(2)           <---------DAG2                  <----------DOF2                --------->ANAC55(2) -->AHL20(2)<---------DAG2        <---------AHL20(2)------>ZmHOX2a(1)                  <---------ANAC55(2) ---AHL20(2)<----------DOF2      <---------ATHB12 ------>ZmHOX2a(2)                   >>>>>>>>>>AtSR1 ------ARR11(3)         <----------DOF2       --------->WRKY12  <---------DOF5.7(2)---------->DOF2  -   atcttcattgaatgctttttctgaagctttatctaataaatctcttcgttgatccttcctttccattaacgaggtagaaattccaaaacgcgtaataatc  23212200                                                                                                   <-                                                                                              -------                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                                                                           <---------ANAC46                                                                                        ------>ZmHOX2a(2)                                                                                        =============                                                                                       ==============                                                                                       <------ZmHOX2a(2)                                                                                       --------->CCA1(2)                                                                                      --------->ARR11(3)                                                                                      --------->ARR14(3)                                                                                      <-----------ARR10    <---------ICU4                                                                    <---------ARR14(3)  <-----------TGA1                                        =====================================HOX2a_HOX2a --------->ETT(2)                   <---------AHL20(2)    ------>ZmHOX2a(1)           <---------AGP1 --------->bZIP60(1)         <---------ARR11(3)         ------>ZmHOX2a(2)             --------->AGP1 <---------bZIP60(1)  ---------->DOF2                 --------->ARR14(2)              --------->ARR14(2) -----ICU4          --------->AHL20(2)      <---------GLK1(1)    <XXXXXXXXXXXXXXXXXXXXMIR851-5P ----- -->ARR11(3)        --------->YAB1 <---------YAB1     <---------ARR14(2)              <---------ARR14(2) -->GLK1(2)      --------------->AGL15      --------->GLK1(1) <----------DOF2         <---------ARR11(3) ->YAB1          <---------------AGL15   <---------TOE2(3)====================================HOX2a_HOX2a >ICU4          <---------YAB1    --------->AHL20(2) <------------------------ANAC81 <---------CCA1(2) --------->ID1<-----------GT1--------->ARR11(3)   ----------->RAV1(2)               ----------->ARR10   ttgtcgtcattacaaattacaataaaaagaagacatttttatttagatttccctctgatcctctcttttagatttcgaatcgagaccagatctgcgtgaa  23212300                                                                          <----------DOF2                                                                          ===========================                               <---------ANAC46                     <---------YAB1                            --------->ARR14(2)                   ----------->HVH21         <--------- --------YAB1               <---------ARR14(2)                   ----------->TGA1          <--------- -->REM1(2)          --------->ZAT18                          --------->DAG2              --------->DEAR3(1) =======================HOX2a_HOX2a                    <---------WRKY12--------->GLK1(2)  --------->ANAC46 =======================HOX2a_HOX2a                  <-----------HVH21<---------GLK1(2) <---------At5g28300 ---->ICU4       <------ZmHOX2a(1)             <-------TEIL  ---------->DOF2  ---------->ID1   gatgatagagaagtgtataggagcgcatcggtttcggagattacagagattcatgcgtcaagggaaagtgacgattctttgtctcgttctcaccgtcatc  23212400                                                              <---------MYB52(1)                                                             --------->LBD16                                                            <---------ANAC46                                                            <---------ANAC55(2)                                                            --------->ANAC55(2)                                                            <---------ANAC55(1)                                                            <---------ANAC58                                                            <---------ANAC58                                      --------->LBD16      <-------TEIL                     <--------   <---------ANAC55(2)        <------MYB46(1)              ------>ZmHOX2a(2)                <--------   <---------O2               <------MYB83                --------->CCA1(2)                 ---------   --------->ANAC55(2)       --------->MYB59              <------ZmHOX2a(2)                <------NtERF2   =============================MYC_MYB<------NtERF2     <---------ARR11(3)                ------>NtERF2   --------->O2              --------->MYB111(1)         --------->ARR14(2)              <---------DEAR3(1)   <---------TGA1a------>NtERF2<---------SPL7            <---------ARR14(2)          ---------->DOF2   <---------ANAC46          --------->MYB46(2)--------->GLK1(1)                     <---------DOF5.7(2)   <---------ANAC58  <---------RAP2.6(3)      <---------ARR11(3)                    --------->ARR14(2)   <---------ANAC55(1) <--------P --------->ANAC58       --------->ARR11(3)         <---------ARR14(2)   <---------bZIP60(2)<---------MYB52(1)      --------->ARR11(3)     <---------ARR14(2) <---------LBD16   <---------ANAC58<------NtERF2  --------->ANAC58      --------->GLK1(1)        --------->ANAC46   --------->TGA1a<---------ZAT2 --------->SPL7--------->CCA1(2)     --------->ARR14(2)--------->ANAC46 ============bZIP_DOF----------->GT1 --------->DEAR3(1) <---------GLK1(1)      --------->ANAC46 --TGA1          <---------ARR14(2)  <---------ANAC46  ----------->ARR10     <---------ALFIN1 --HVH21         --------->ARR14(2) <---------LBD16   <------ZmHOX2a(1)     <---------REM1(2)      <-   gtcttacgtggcacaatcggagccggtaagtttggtacgccggagaaagatatcgaggagatccgtgagcatttcttctacacgcgtaaacgcggcgagc  23212500                                       --------->SPL7                                  <-----------HVH21                                 <---------bZIP60(1)                        --------->TOE1(2)     <---------ARR14(2)          <---------O2                     --------->ZAT2          --------->ANAC58     --------->ARR14(2)          --------->O2                     --------->At4g35610     --------->ANAC58 -ANAC58                 <---------HSFB2a(2)               <---------MYB46(3)             --------->ANAC46 -ANAC58 ------>ZmHOX2a(1)       --------->bZIP60(1)<---------ARR14(2)    --------->ARR11(3) >DEAR3(1)               --------->HSFB2a(2)        --------->ARR14(2)    <---------ARR11(3) --------ALFIN1  <---------ARR11(3)  <---------SPL7<------ZmHOX2a(1)      --------->ARR14(3)   ctcaccgtgtcctcgtcgaggtctcttccaaaacgacgtcgtccgaagacggaggaaatggtggtaacagctacgagaccttcgatatcaacaagctatt  23212600  Previous    Next  AGI:  At3g62710.1    Description:  glycosyl hydrolase family 3 protein. similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G20950.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G20950.2); similar to exoglucanase precursor [Zea mays] (GB:AAF79936.1); similar to unknown [Populus trichocarpa] (GB:ABK95015.1); similar to beta-D-glucosidase [Tropaeolum majus] (GB:CAA07070.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) Range:  from: 23208634    to: 23211611    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g62720.1    Description:  ATXT1; UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups. Identical to Xyloglucan 6-xylosyltransferase (XT1) [Arabidopsis Thaliana] (GB:Q9LZJ3); similar to ATXT2, UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G02500.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70988.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59912.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77730.1); contains InterPro domain Galactosyl transferase; (InterPro:IPR008630) Range:  from: 23212093    to: 23213883    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version