AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                 <---------ATHB12
                                --------->ANAC58
                                --------->ANAC58
                           --------->ANAC58
-->MYB52(1)                --------->ANAC58                                        <-----------GT1
-MYB59  <------ZmHOX2a(1)<------ZmHOX2a(1)              --------->YAB1      <-------TEIL ------->GAMYB
 
tgtatcaagaaggagagtcttaagagcaggaagccaagcattcttagggagaatgtcaataacaaaaccagaccctagtttcattttcacaacgctcttg  23105900
                                                                                                ----
                                                                                             <------
                                                                                             -------
                                                                                             <------
       ------>ZmHOX2a(2)                                              --------->ANAC58       -------
       ===============================HOX2a_HOX2a                     --------->ANAC58       <------
      <------ZmHOX2a(2)                                             <---------ALFIN1         -------
      <---------GLK1(1)                                            --------->ZAT14          <-------
      ================================HOX2a_HOX2a                 <---------ALFIN1          --------
     <---------ARR14(3)                                 --------->CCA1(2)          <---------ANAC58
     <---------AGP1                                     <------ZmHOX2a(2)          <---------ANAC55(2)
     --------->ARR11(3)                                --------->AGP1 --------->ANAC46    --------->WOX13(1)
     --------->ARR14(3)          ----------->HVH21     <---------ARR14(2)          <---------ANAC58
     <---------ARR14(2)        <---------At4g35610     --------->ARR14(2)          <---------ANAC46
     <-----------ARR10         ------>ZmHOX2a(1)       <---------ARR11(3)          --------->ANAC55(2)
     <---------ARR11(3)        ================================HOX2a_HOX2a  <---------ALFIN1<-------
     --------->ARR14(2)        --------->At4g35610     --------->ARR11(3) ----------->RAV1(1)-------
 
caagtgaagatctcagaaggcagtgagtaatctcctctgacattgatgtccagttcaagatccaagactccacactccaacacattgcgtaaacaatcat  23106000
------->HVH21
------ATHB5
-->ATHB51                                                 --------->WRKY38(1)
---ICU4                                                   ----------->HVH21
->ATHB1                                         ----------------->AGL1                     ---------
--ATHB1                                     --------->GLK1(2)                           <------ZmHOX2a(2)
-->YAB1                                     <---------ARR14(2)                  <---------YAB1
--ATHB12                                    --------->ARR14(2)           <---------At4g35610
->ICU4                                     <---------GLK1(2) <---------ANAC46  --------->TOE2(3)
--YAB1                            --------->TOE2(3)      --------->At5g28300  --------->YAB1    <---
-->ATHB12                         <----------DOF2 ------>ZmHOX2a(1)      --------->At4g35610    ----
 
tgacagttttatactgagcaaaattcaaagactgcaactttagagagaatctcctaatacggtgactggcaagtcgagctaacattattcgatcagcgaa  23106100
                           ------>NtERF2
                          --------->DEAR3(1)
                         <------NtERF2
                        ------>NtERF2
                       --------->ANAC46
                      --------->SPL7  ------->GAMYB
                      --------->ATERF1(1)                                     <---------ARR14(2)
                     <---------ATERF1(1)                                      --------->ARR14(2)
                     --------->At4g35610                            --------->ARR14(2)
                     <---------At4g35610                            <---------ARR14(2)           ---
>At4g35610   --------->ICU4--------->LBD16                          <---------GLK1(2)            ---
------ARR11(3)--------->MYB52(1)   --------->MYB52(1)           ----------------->AGL2           ---
----->ARR11(3)<---------ICU4  <------ZmHOX2a(1)        <---------YAB1 <-------TEIL             -----
 
atctttgaaacttgcactaatggcagacgccgaggaatcaacgaaaacagcaatcggtatgatggtaaccagattcagccagttcttggaggtatacttc  23106200
                                 --------->ANAC46
                                 <---------ANAC55(2)
                                 --------->ANAC58
                                 --------->ANAC58
                              <------ZmHOX2a(2)
     --------->HSFC1(2)      <---------ARR11(3)
     <---------HSFC1(2)      --------->ARR11(3)
------>ANAC58               --------->GLK1(1)                                               --------
------>ANAC46               <---------GLK1(1)                    <---------GLK1(2)       --------->TOE2(3)
------>ANAC58   --------->ETT(2) --------->ANAC55(2) ----------->GT1                     --------->TOE1(3)
----->DOF2<----------DOF2 <------ZmHOX2a(1)  --------->ZAT6 <-----------GT1   <----------DOF2
 
aagcaagtagcttcttttgtcgaaagtaaggagatcacgcgatagataacaccatctggtaaattactgattctatccattcttttctcaaaccctaaag  23106300
                                                  <---------O2
                                                  <---------ANAC58  ------->GAMYB
                                                  <---------ANAC58  --------->YAB1
                                         --------->TOE1(3)          --------->TOE2(3)
               --------->LBD16          --------->HSFC1(2)         --------->MYB46(3)
       <-----------GT1  ------------>CBF<---------HSFB2a(1)       -------->P          ------------>CBF
   <----------DOF2     --------->TOE1(3)--------->HSFB2a(1)      --------->WOX13(1)   <------ZmHOX2a(2)
-->DOF2--------->ZAT6  --------->TOE2(3)<---------HSFC1(2)    --------->TOE2(3)      <---------ARR11(3)
 
aaccctcttttcactacccagaaaaacctcaatttctaatggaaccttcagtgacttgacttcaacatcaaccaaaattcccaaactagatcaatttcaa  23106400
                                                <---------ICU4<---------ARR14(2)
                                                --------->YAB1--------->ARR14(2)
                                               <---------ATHB12                        ----------->GT1
                                        --------------------->WRI1    --------->ARR14(2)
                                        --------->TOE1(2)   <----------DOF2--------->ANAC58
        --------->ZAT2          <---------At4g35610        <---------ANAC46--------->ANAC58
        --------->At4g35610     --------->At4g35610 ------------>CBF  <---------ARR14(2)
 
aggctaagacgagcttacttcacatgtaggcatgaagcagaaacctagaaatcatcgcaatcgcgtttatgcagaaccaagaaaaccgaagcgtaatttg  23106500
                                                                                                 ---
                             ------------>CBF                                                    <--
                    ------------>CBF                                                            ----
                   --------->ANAC58                                  --------->YAB1            -----
            --------->ANAC46 <---------ATHB12          <------------CBF                        <----
        <--------P --------->ANAC58       --------->GLK1(1)     ------------>CBF              ------
      <---------ANAC46       <------ZmHOX2a(2)   XXXXXXXXXXXXXXXXXXXXXXX>MIR163            <--------
 <------------CBF  --------->ANAC46       <---------GLK1(1) ------->TEIL                ---------->DOF2
 
cagaaattggggtagacgagacactcaatccgatcaatttgagagatttctgaagcgaaattgaatcttcaatgagaaatggacgaagaagtagagcgga  23106600
         <---------ANAC58--------->ANAC58
------------>AtSPL3    ---------->DOF2
----NtERF2            <------ZmHOX2a(1)
-->NtERF2<---------ANAC58--------->ANAC58          <---------AHL20(2)          --------->CCA1(2)
---->ARR14(2)      --------->At4g35610            --------->AHL20(2)          <---------ARR14(2)
-----ARR14(2)   <---------At4g35610               <---------AHL20(2)          --------->ARR14(2) ---
--->ATERF1(1)   --------->At4g35610    <---------YAB1                     <---------LBD16     <-----
-At4g35610      <---------ZAT14        <---------AHL20(2)          --------->AHL20(2)        <------
 
gccgtagcattttcttgagagcagaggaaagaaatttgaatttttattatctattaattttgctcattttttatatactcggatacaaaaacaaaacctt  23106700
                                   <------NtERF2
                         ----------->RAV1(2)
                        ------>NtERF2  --------->ANAC58
                       --------->DEAR3(1)
                       <---------ALFIN1--------->ANAC58
                      --------->ATERF1(1)                                                   <------MYB46(1)
                      --------->ORA47(2)     <<<<<<<<<SARD1     <--------P                  <------MYB83
                     <---------RAP2.3(1)     <<<<<<<<<CBP60g   <-------GAMYB               ---------
                     ------>NtERF2 ------>NtERF2              ----------->GT1          --------->ATHB51
                    --------->ANAC46 <---------ALFIN1         <---------ANAC46         --------->ATHB12
             <--------HAHB4       --------->ANAC46         --------->ALFIN1            --------->AHL20(2)
             --------->YAB1       --------->ANAC58       <-----------RAV1(1)           <---------AHL20(2)
------->ID1  <---------ICU4       --------->ANAC58     <---------ANAC46      <---------ARR11(3)
-----DOF2   <---------ATHB12     <---------ZAT18     <---------ZAT14         <---------GLK1(2)
---DAG2   --------->WOX13(1)     --------->ZAT18     --------->ZAT14         --------->ARR11(3)
 
ttcgtttttgagccaatcattttgcgccacctgtagtccgccactccaaatttcggtttagtgtggggttgaattgtttagatttttgaattatttggta  23106800
<- Previous    Next ->

AGI:  At3g62430.1   
Description:  F-box family protein. Identical to Putative F-box protein At3g62430 [Arabidopsis Thaliana] (GB:Q9LZP7); similar to syntaxin-related family protein [Arabidopsis thaliana] (TAIR:AT3G54160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63569.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566)
Range:  from: 23104771    to: 23106280    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version