Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <------ZmHOX2a(1)      --------->ANAC46                         <---------ANAC46     --------->LBD16                --------->GLK1(2)    <---------HSFB2a(2)            --------->RVE1(1)    --------->HSFB2a(2)  <---------ICU4       --------->ZAT2                                 <-------  ------>ZmHOX2a(1)    --------->GLK1(2)      <---------ZAT2                                 -------- ---->ZmHOX2a(1)       --------->ARR11(3)     --------->At4g35610                          <--------P >ZmHOX2a(2)           <---------ARR11(3)  <---------At4g35610                           <------MYB46(1) ---GLK1(1)           --------->RVE1(1)<----------DOF2                                 <---------WOX13(1) -->GLK1(1)       <---------AHL20(2)--------->ARR11(3)                               --------->ATHB12 --ARR11(3)       --------->AHL20(2)<---------ARR11(3)                 <-----------HVH21 <------MYB83 ->ARR11(3)   --------->AHL20(2)   --------->CCA1(1)     ------>ZmHOX2a(1)       --------->YAB1   cctcctccaggaaacttaaattaaaaatcttgacaaaaaatctttagcagcttggaatccttctctgtttctcagtcactcactcatagattggtagcta  23010600                                                                                                <----                                                                                      --------->ALFIN1                     --------->AHL20(2)                                --------->ATHB12        <-----  --------->YAB1     <---------AHL20(1)                              <---------WOX13(1)<---------MYB46(3) --At4g35610         <---------AHL20(2)                            --------->ATHB12<---------WRKY12 ->At4g35610   --------->YAB1           <---------MYB46(3)        --------->ICU4 <-----------HVH21   aaaatcaaaactttgaatcacaaaaaatttctctctcatggatggatggatagtagtagcaagttgcaaagattgattagatgggtcagtggtgagagga  23010700                                                    >>>>>>>>>E2Fc                                                    >>>>>>>>>E2Fd                                                   ------>NtERF2                                                   --------->LBD16                                  <                                                   <------NtERF2        <-------TEIL               <-         <<<<<<<<<<<<<<<<<LFY                     --------->ANAC58   <------MYB46(1)               --         --------->ANAC46                         --------->ANAC46   <------MYB83                 ---       --------->DEAR3(2)       ---------->DOF2   --------->ANAC58  --------->MYB59              ----      --------->PCF2       --------->ATHB12--------->ARR14(2) --------->ANAC58                   <--- <---------LBD16           <---------ICU4  <---------ARR14(2) --------->ANAC46              --------- -----ARR14(2)             -------->ATHB1  <-----------ARR10  --------->ANAC58              ------->TEIL -ZmHOX2a(1)              <---------YAB1  <---------MYB52(1)---------->DOF2               <---------SPL7   aactggggaacccacaatggacataaaaatcattgaaagagaccgtttctgcccgccaaaattcaagcagtaggtccatcttctaccttctccgtaccca  23010800                                     --------->ANAC46                                     --------->ANAC58                       ---------->DOF2 ---------                                     --------->ANAC58                      --------->AHL20(2)                                  --------->TOE1(2)                        <---------AHL20(2)                                ------>ZmHOX2a(1)                         <---------YAB1    ---------                         --------->ARR14(2)                             <---------ICU4     --------->KAN4(1)                         --------->ARR11(3)        <---------AHL20(2)   --------->ATHB51   <---------KAN4(1) <---------ICU4          <---------ARR11(3)        <---------YAB1       <--------HAHB4     --------->HSFC1(2) ---------YAB1           <-----------ARR10         --------->AHL20(2)  --------->ICU4      <---------HSFB2a(1) --------ARR11(3)       --------->RVE1(1)        --------->CCA1(2)     <---------YAB1      <---------HSFC1(2) ------->ARR11(3)       --------->CCA1(1)       <---------ARR11(3)   --------->TOE1(3)     --------->HSFB2a(1) ------>YAB1        --------->AHL20(2)          --------->ARR11(3)   --------->TOE2(3)    <---------KAN4(2) ----->ICU4         <---------AHL20(2)    >>>>>>>>>MYB2              --------->YAB1   >>>>>>>>>TBF1 ------ATHB12    <---------AHL20(2) <---------TOE1(2)             <-----------GT1  >>>>>>>>>TBF1 >SPL7           --------->AHL20(2)------>ZmHOX2a(1)          <----------DOF2<---------TOE2(3)   tgatcatcgccattaccaattttttaatatcttcctcctacgaaaaccaagatataattagagactttaaaccataattaaagaagaagaagaacattcg  23010900       --------->ARR11(3)       <---------ARR11(3)      --------->GLK1(1)     --------->TOE2(3)     <---------ARR11(3)     <---------MYB59             ---------->DOF2    --------->YAB1      <---------ARR14(2)          <----------ID1 >TOE1(2)     --------->ARR11(3)                ---------->DOF2            --------->GLK1(1) -------- >KAN4(2)     <---------ARR11(3)          ----------->GT1      <-----------HVH21      ---------->DOF2   attcgatgatatctaagatgtctggagataccttatttgatgttctgttacaaagagacaaagagggtcactgagagaaacccagagagaaagagaaacc  23011000                                           <---------MYB46(3)                                    ----                                           <-----------RAV1(1)                                   <---                                <------------CBF                                               ------                             <---------ATHB12                                              <---------YAB1                             ------------>CBF      --------->ANAC58                ---------->DOF2  -                 ----------->RAV1(1)    --------------->AGL15              ------>ZmHOX2a(2)  <------        <---------AHL20(2) --------->WOX13(1)      --------->ANAC58        ========================== ->GLK1(1)      *TSS   --------->YAB1   <----------DOF2              --------->ANAC55(2)   <---------AHL20(2)   cagtctgtattaatatgaacaacacttataaatcaattgtttcttttgttgggaaggaatcagcgtatttcatgtgatccgaactaaaagaatattatta  23011100       ---------->DOF2    <------ZmHOX2a(1)   <----------ID1 ------->TBP ------YAB1 --->YAB1                                                                             ---------->DOF2 --------->DOF2 <------------CBF                     <---------WOX13(1)     ----------->GT1 ---YAB1   ----------->GT1                         --------->ATHB12      --------->DAG2 ==========HOX2a_HOX2a        <---------GLK1(2)  <---------WOX13(1)     ---------->DOF2           ---   taaaaaggataaagagaaaattgtgaccttcaaattcttcttacatcgaagattgattgattctattgaagcaaaaaagggttttttgaaaagctctgta  23011200                                                                        <---------ANAC58                                                                    -------->ABF1                                                                    ------->PIF5                                                                    <-------PIF5                                                                    ------->MYC2                                                                    <-------MYC2                                                                    ------->MYC4                                                                    <-------MYC4                                                                    ------->MYC3                                                                    <-------MYC3                                                                   --------->ANAC55(2)                                                                   --------->O2                                                                   >>>>>>>>>>AtMYC2                                                                   <---------ANAC55(2)                                                                   <---------O2                                                                   >>>>>>>>>>HY5                                                                   <---------bZIP60(2)                                                                   <---------TGA1a                                                                   ===============MYC_MYB                                                                   >>>>>>>>>>ABI5                                                               <-----------HVH21                                                              ----------->HVH21                                                             <-----------HVH21                                                             ------->MYC3    <------MYB46(1)                                                             <-------MYC3    <------MYB83                                                            --------->ANAC55(2)                                                            <---------ANAC55(2)                                                            --------->ANAC46<---------AtMYB61                                                            <---------bZIP60(2)                                                            <---------TGA1a --------->MYB59                                                            --------->O2<---------ANAC46                                                            <---------O2<---------ANAC58                                                            ======================MYC_MYB                                                            <---------bZIP60(1)                                                            --------->TGA1a<---------MYB55(1)                                                            --------->bZIP60(1)                                                         <------ZmHOX2a(2)<---------MYB52(1)                     --------->ANAC58              <---------DOF5.7(2) <------NtERF2          -------          <-----------GT1                          --------->MYB52(1)--------->ALFIN1--------->SPL7<- <----------DOF2     --------->ANAC58--------->MYB52(2) <-----------HVH21 <-------GAMYB       <------ ------>ICU4      <----------ID1<---------ANAC46 --------->ARR11(3)--------->TGA1a<---------ANAC55(2)   attcttttttttttactaatgagacgaaacgctgtcgtttagttggaagaagataacggatcacgtgacacgtggcgtttggtctcgtaagtcgtaacgt  23011300         <---------WOX13(1)      --------->WRKY12      --------->WRKY38(1)           --------->ATHB51      --------->ZAT18            --------->YAB1      <---------ZAT14           <---------YAB1 -->ANAC55(2)            <-----------GT1            ----------->GT1        --------->ARR11(3) --------ZAT6          --------->YAB1     ----------->GT1       ----------->RAV1(1) ---ANAC46       <---------At4g35610<---------ICU4---------->DOF2      ---------->DOF2 <---------REM1(1)   agtgagagttgactgactctgctaattatacgttttcataatttcagttaaaaaaagataaatggacaccagaaaaagagctagaattggtgaagggatt  23011400                                                                                                   <-              --------->LBD16                                                                      --       <---------AHL20(1)                                                                          <-       --------->AHL20(1)                                                                          --       <---------AHL20(2)                 --------->ANAC58                                      -----      --------->AHL20(2)                  --------->ANAC58                                      -----      <---------AHL20(2)        <---------AHL20(2)                              --------->AHL20(2)---      --------->YAB1            --------->AHL20(2)                         --------->AHL20(2)  <-----   ttttgaaattatattccgaaattagagagaagaattaataagacaggcatagtaatgagacagacttgttgttgtctataaataaaacaatacaacatcc  23011500  Previous    Next  AGI:  At3g62110.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G33440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40225.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 23008006    to: 23011016    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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