Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->YAB1                                                                           <---------ZAT6                                                                         <---------ANAC58              <---------ANAC46            <---------MYB46(3)             <---------ANAC46            <----------DOF2               <------MYB83             ------>ZmHOX2a(2)    <---------ZAT14                       <------MYB46(1)---------->ID1  <---------ANAC58    --------->ZAT14                   <-----------RAV1(1)<---------TOE2(3) ----------->GT1   aaagactgtagtagctttgtgtatgaaaacatgaacaattttgttggttcttggagtttgtggttttgatctattgagtgtgaaataatagacaaaacta  22984200                                                     <---------AHL20(2)                                                    --------->AHL20(2)                                           <---------HSFB2a(2)           ----------->GT1                                           --------->HSFB2a(2) --------->ARR14(2)             --------->YAB1                >>>>>>>ZML2    ----------------->AGL1            <---------YAB1                 <---------HSFC1(1)  <---------ARR14(2)   <---------ANAC58                        --------->HSFC1(1)  <---------ARR11(3)                ----   <---------ANAC58             <---------YAB1<------ZmHOX2a(1)--------->GLK1(2)            ---------   atcttgctggtcttatgatgttgttcataaaaacatgattttgttctaggaatattaaatgccaaaatctgtaagcagttaaattttcagagaatgatat  22984300                           <----------DOF2                       <---------ZAT18                                     <----------DOF2                      <---------ANAC58                               ---------->DOF2                      <---------ANAC46                           --------->YAB1                      <---------ANAC58    ---------->DOF2     --------->YAB1     --------->ANAC46 ----->YAB1  <---------AHL20(2)   ----------->GT1            --------->AHL20(2) <---------LBD16 >YAB1       --------->AHL20(2) ---------->DOF2 <----------DOF2  --------->AHL20(2)     --------->YAB1   caaaattttggaaaattaaaaattgtgtgctttagaaagaaaaaaaaaggctttctacagcaaataataaaaaaaggctttctacggcaattgtacttga  22984400             <-----------RAV1(2)           ------->GAMYB           --------->AtMYB61          --------->MYB46(3)         -------->P               <---------AHL20(2)                                      ---------->DOF2      --------->LBD16             --------->AHL20(2)                              <---------ATERF1(1)     --------->ANAC46      >>>>>>>>>MYB98                                  <---------ANAC58     --------->ANAC58  --------->TOE2(3)                                   <---------bZIP60(2)     --------->ANAC58  --------->TOE1(3)                                   <---------ANAC58    <---------LBD16 <-----------GT1                     ---------->DOF2    <---------ANAC46       <--   --------->At4g35610--------->ZAT6     <---------REM1(1)       ----------->GT1  --------->ALFIN1---   tagtcatccgcaaccacaggtttaaccctaacccaattttttgttgtaacttaagagagaaagcatttggataaatgacttgggctgggcctaaaagaaa  22984500                                <---------ANAC58                         --------->YAB1                            <---------ATHB12                         <---------ICU4                           ------>MYB83                         --------->ATHB12                         ------>MYB46(1)                         <--------HAHB4                          --------->WOX13(1)                        <---------YAB1                          <---------ALFIN1                      <---------ICU4                            --------->AtMYB61                     --------->ICU4                       *TSS  --------->MYB46(3)              --------->ZAT2    <---------ANAC58         <---------ARR14(2)              <---------At4g35610                        --------->ARR14(2)              --------->At4g35610                       <------ZmHOX2a(1) -------AHL20(2)     <---------YAB1                   <---------TOE2(3) ------>AHL20(2)   --------->YAB1                     <---------TOE1(3)            --------->TOE2(3)   ttaaaaataggcctctagctgtcattatcattaggcgtaagttagcatgagatgctaaggataccaccaatccatagagttgctaacttaaaaaacaagg  22984600                                                        --------->DAG2             <---------ANAC58             <---------CCA1(2)                     ------>MYB83           --------->WOX13(1)       --------->ARR14(2)                         ----------->RAV1(1)    <---------ICU4       <---------ARR14(2)                       --------->DEAR3(2)      <---------ATHB12      <-------GAMYB                     ---------->DOF2---------->DOF2  <---------YAB1     <---------DEAR3(2)          <-------GAMYB  <---------MYB55(2)    --------->YAB1              ---     <---------MYB46(3)         <-----------RAV1(1)------>MYB46(1) <----------DOF2 <---------ANAC58    <---------DEAR3(1)    ---------->DOF2       --------->MYB46(3) --------->TOE2(3)<----------DOF2   ctcgaggcggttctcttatctgcaaaactaaagactgttgtctaaagcgaaccaacaaaaagtcttcatctttaatcattcaatggcttcttcgtcttct  22984700                                 <---------GLK1(2)       <---------RAP2.6(2)           <---------ALFIN1    <---------TOE1(2)        <---------LBD16                  <----------DOF2     <---------MYB46(3)        <---------TOE2(2)   --------->REM1(1)                  <---------YAB1  <---------At4g35610         <-----------RAV1(2)------>ZmHOX2a(1)               --------->ARR11(3) ------>AtLEC2    --------->ANAC46       --------->TOE2(3)      <-----------GT1  <---------ARR11(3)   atgcagatggttcacacttcccgctccattgcccaggttctaaacttaatcctacatttgcggttttttcaattttcgtcgaagatttatgctttgaatt  22984800                  <----------DOF2           <<<<<<<<<TBF1   <---------ANAC58                   --------->ARR14(2)       <-----------GT1     <---------ANAC58    --------->ANAC58   <----------DOF2<---------DAG2       ----------->GT1        <---------ARR14(2)<---------ANAC46   ------>ZmHOX2a(1)       <---------ANAC46    --------->ANAC58         ------>ZmHOX2a(1)          <-   ctatccttttttcttcttcactttaagtagtgtgtctctgtgagttaaaacgaaatttcaatcggatactattcctgttcttgtgggttttttttggtct  22984900                                    <------MYB83                                    <---------ANAC58                                    <---------ANAC46                                    <---------ANAC58                                    <---------ANAC55(1)                                      <-------                                   --------->MYB52(2)                                  <----------DOF2                                   <---------DEAR3(1)                                 <---------ANAC58               <<<<<<<<<MYB2      <-------TEIL                                        <---------ANAC58             <------MYB46(1)   <---------ANAC58                                   <---------MYB52(1)             <------MYB83      <---------ANAC58                               <---------ATHB12     <----------DOF2   --------->REM1(2)      --------->RAP2.6(2)           --------->WOX13(1) --------CCA1(2)    <---------ANAC46<------MYB46(1)                   --------->MYB46(3)     <-------   taaatctcttttgtttggttttctgtgtagattgggttcggtgttaagtcgcaattagtttctgcaaatcgaacaactcaatcagtttgctttggagctc  22985000                                                                                        <---------ARR14(2)                                                                                        --------->ARR14(2)                            <---------ZAT14                                       --------->At4g35610                            --------->ZAT14                                     --------->YAB1                 <---------YAB1                                                <---------ATHB12    <---------HSFB2a(2)     <---------ZAT18                                   --------->ANAC58    --------->HSFB2a(2)     --------->ZAT18                --------->LBD16    ------>MYB83   <---------LBD16    --------->HSFB2a(2)                <---------LBD16      --------->ANAC58  ------>ZmHOX2a(1)   <---------HSFB2a(2)       --------->ANAC58         --------->AtMYB61         xx --At4g35610    <---------ARR11(3)              --------->ANAC58        --------->MYB46(3)       <--- --ZAT2         --------->ARR11(3)            ---------->DOF2<---------ANAC46 ------>MYB46(1)    ----   gttcctctggaattgcattatcttcgagattgcactatgcatcacccattaagcaattttctggggtttatgcgaccaccaagcatcagagaaccgcttg  22985100  Previous    Next  AGI:  At3g62030.1    Description:  ROC4 (ROTAMASE CYP 4); peptidyl-prolyl cis-trans isomerase. Identical to Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplast precursor (CYP20-3) [Arabidopsis Thaliana] (GB:P34791;GB:Q8LBZ9;GB:Q9FPH5); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT5G13120.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69876.1); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; (InterPro:IPR002130) Range:  from: 22984558    to: 22986353    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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