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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                  xxxxxxxxxxxxxxxxx>smallRNA(si3)
                <---------GLK1(2)
                <---------ARR11(3)
                <---------ARR14(2)
                --------->ARR14(2)
               <------ZmHOX2a(1)    xxxxxxxxxxxxxxxx>smallRNA(s)
              xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
             xxxxxxxxxxxxxxxxx>smallRNA(fl3)
             xxxxxxxxxxxxxxxxxxx>smallRNA(se3)
             xxxxxxxxxxxxxxx>smallRNA(si3)
             xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
             xxxxxxxxxxxxxxxx>smallRNA(fl3)
             xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
             xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
            xxxxxxxxxxxxxxxxxxx>smallRNA(se3)
            xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
            <-----------RAV1(2)    xxxxxxxxxxxxxxxx>smallRNA(si3)
            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
            xxxxxxxxxxxxxxx>smallRNA(le3)
            xxxxxxxxxxxxxxxxx>smallRNA(se3)
            xxxxxxxxxxxxxxxx>smallRNA(s)
           xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 ------->GAMYB
           xxxxxxxxxxxxxxxx>smallRNA(s)                 <------NtERF2
       xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s)
      --------->ZAT2              xxxxxxxxxxxxxxxx>smallRNA(s)     <----------DOF2
      <---------At4g35610  ----------->HVH21           --------->ANAC46
      <---------ZAT2    <-----------ARR10              ------>NtERF2
     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <---------ETT(1)
  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             <---------LBD16                            ---
 xxxxxxxxxxxxxxxx>smallRNA(s)    --------->LBD16      --------->LBD16                            <--
 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------LBD16                   <---------AHL20(2)
 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------MYB52(1)
 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->LBD16 --------->MYB52(1)<----------DOF2    -----
>GLK1(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(s)  <---------ANAC58   <-----
-ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(s)  <---------LBD16--------->LBD16     <---------ANAC58   ------
>ARR14(2)xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-----------GT1     <------
 
ttgtagtctagctggtcaggatactcggctctcacccgagagacccgggttcgagtcccggcaacggagtctttttttgctttctgtttttttatttccg  22787000
                                                             <---------AHL20(2)
  --------->At5g28300                                        <---------AHL20(1)
 ----------->GT1                                 <---------YAB1                 ----------->GT1
------>ARR14(2)                     ----------->GT1          --------->AHL20(1) --------->ANAC58
-------ARR14(2)                     <---------ZAT6<---------ICU4           <---------YAB1
---->LBD16                      --------->ARR11(3)--------->ATHB12       --------->YAB1
----HSFB2a(2)             <---------ANAC58     <---------At4g35610      --------->ICU4
--->HSFB2a(2)             <---------ANAC58 --------->ARR14(2)--------->AHL20(2) --------->ANAC58
---LBD16        ------->TEIL  ----------->ARR10--------->At4g35610     <---------WOX13(1)    <------
 
gaaactgtaaaatagaatgaacttagaagtcgtgagatactgttactatctgctcattgctcaataaaatgttgaatgatgaaacgaaaatagctagagg  22787100
                                                                                        --------->ANAC46
                                                                                        <---------ALFIN1
                                                                                        --------->ZAT6
                                        --------->ANAC58                              ----------->RAV1(1)
                                        --------->ANAC58      ----------->GT1         <---------ALFIN1
                   <-------MYC3  --------->ANAC46         --------->ZAT6        <---------MYB52(1)
                   ------->MYC3 --------->SPL7     --------->AHL20(2)        ------>MYB83
    ----------->RAV1(1)    <-----------HVH21  <---------AHL20(2)             ------>MYB46(1)
---ZAT6    --------->RVE1(1)  <---------SPL7  --------->AHL20(2)        <---------WRKY18(1)        -
 
taaacaacaacaaaatatcacacatgtcaatgtcatacggctcaagcatttaaactaaataagactagaaaaacttgacctcccttgggccacactacta  22787200
                                                                <---------------AGL15
                                                         <---------AHL20(1)
                                       <---------AHL20(2)<---------AHL20(2)
                                       <---------ICU4    --------->ARR11(3)                ---------
                                      --------->AHL20(2) --------->AHL20(1)               <-------TEIL
             --------->ANAC46       ------>MYB83       <---------TOE2(3)               --------->At4g35610
           <-----------GT1          ------>MYB46(1)   <---------AHL20(2)            --------->LBD16
    <-----------GT1               --------->TOE2(3)   --------->AHL20(2)           <---------ANAC46
 --------->bZIP60(1)       --------->ANAC58           --------->YAB1               <---------ANAC58
 <---------bZIP60(1)       --------->ANAC58  ---------->DOF2 <-----------GT1------------>CBF      --
-------->ZAT14    ----------->GT1 <---------MYB59   <---------YAB1 <---------ATHB12<---------ANAC58<
 
agtgaagtcactattcacaaaacgtataacaagaaaacctaataaatgcaaagctattaatattttgccaaacattgtattcaatgccgtagctacattt  22787300
           --------->ANAC46
          --------->LBD16
        ------>MYB83
      <---------MYB111(1)
      <---------MYB111(2)
      --------->AtMYB61
      --------->DEAR3(1)
      <---------ALFIN1
     --------->ZAT2
     <---------ZAT2
    ------>MYB46(1)
    ------>MYB83
   <---------ALFIN1                                                                  ------->MYC3
   --------->MYB55(1)                                                                <-------MYC3
  <---------MYB111(1)                                                               --------->O2
  <------------AtMYB84                                                              ================
  <---------MYB111(2)                                                               ================
  --------->DEAR3(1)                                                                <---------O2
  <---------MYB55(2)                                                                --------->PIF3(3)
  <---------MYB46(2)                                                                ================
  --------->MYB46(3)                       <---------ICU4                     <---------ARR14(2)
 --------->ANAC46                       --------->YAB1                     *TSS     --------->TGA1a
 --------->ANAC58                      <---------ATHB51                    ------------>CBF
 --------->ANAC58                      <---------ATHB12                  --------->ANAC46
 <---------ALFIN1                  ------------>CBF                      --------->ANAC58
------>NtERF2              --------->AHL20(2)                            --------->ANAC58
>REM1(1)------>MYB46(1)    <---------AHL20(2)                   <-----------GT1     <---------TGA1a
------->MYB46(3)       --------->AHL20(2)  --------->YAB1  ===================================bZIP_DOF
---------ALFIN1 <----------ID1   --------->ANAC46          <----------DOF2------>NtERF2            <
 
ccccacccacctccccaaaacaccaaaaaaataaatacaccaataataatctctccatcactcttttttgccatcgacgccaatcccacatggccctaac  22787400
                           <---------ALFIN1
                          ------>NtERF2
                         <---------ALFIN1
                         --------->DEAR3(1)
                      --------->DEAR3(1)
                      --------->ANAC58
                      --------->DREB2C(2)
                      --------->RAP2.6(2)
                      --------->ANAC46
                      ------->GAMYB
                      --------->ANAC58
                     --------->DEAR3(2)                       --------->ARR14(2)
                     --------->MYB46(3)                ------>ZmHOX2a(1)
                     <---------MYB55(2)              ----------->RAV1(2)
==========bZIP_DOF   <------------AtMYB77          --------->AtMYB61        <-----------GT1
==================================MYC_MYB          <---------ALFIN1 -------->P
==============================MYC_MYB         ------>ZmHOX2a(1)     ------>MYB46(1)
----------DOF2  <-----------HVH21---------->ID1 <---------ALFIN1    ------>MYB83       ------>NtERF2
 
ctctttcttcaccatcaaatgtcaaccgccaccctcgtcgtcttccctcctccacctcctgtccctatccctacctatataactagcctcggccttggct  22787500
                                                                            --------->ANAC46
                                                                            --------->ANAC58
                                                                            --------->ANAC58       -
                                                                            --------->TGA1a        -
                                                                            ====================bZIP_DOF
                                                                            --------->O2           -
                                                                         ----------->HVH21         -
                                                                       <------NtERF2               -
                                                                      ------>NtERF2                -
                                                                      <---------ATERF1(1)         --
                                                                     --------->ANAC58             --
                                                                     --------->ANAC58            ---
                                                                     <---------ALFIN1            ---
                                                                    --------->LBD16             <---
                                                                    ------>NtERF2               ----
                                                                   --------->DEAR3(1)           ----
                                                                   <---------ANAC58            -----
                                                                   <---------ANAC58           ------
                                          --------->YAB1          --------->ATERF1(1)<----------DOF2
                                          <---------ICU4       ----------------------->TaNAC69(2)<--
                                          -------->ATHB1      --------->At4g35610  <---------At4g35610
                                    --------->ANAC46         <-----------RAV1(1)------>NtERF2 <-----
                              <---------CCA1(2)              <---------MYB46(3)--------->DEAR3(1)---
                       ------>ZmHOX2a(1) <---------ATHB12--------->REM1(1)<---------ALFIN1 ------>NtERF2
 
actccatagccatagctctaggtttcctcgttcttatctccacaatcattctctcttcttacatctgttgccgcgcctcacgcctccgcttctctgcctc  22787600
           --------->ANAC46
     --------->ANAC46
     --------->ANAC58
     --------->ANAC58
<------NtERF2
------>NtERF2
--------->LBD16
-------->DEAR3(1)
-------->RAP2.3(2)
-------->RRTF1(2)
-------->RAP2.6(2)
-------->RAP2.3(3)
-------->RRTF1(3)
------->RRTF1(1)                                                                              <-----
------->RAP2.3(1)                                                                             ------
------>LBD16                                                                   --------->ARR11(3)
--->NtERF2 --------->ANAC58                                                    <---------ARR14(3)
------ALFIN1                              <---------DOF5.7(2)     --------->ZAT2 ------>ZmHOX2a(2)
----->ANAC46                            --------->DOF5.7(2)       <---------At4g35610    --------->HSFB2a(2)
----->DEAR3(1)                         <----------DOF2            <---------ZAT2<------ZmHOX2a(2)
---->ATERF1(1)      ------->TEIL      <---------ANAC58            --------->At4g35610    <---------HSFB2a(2)
>NtERF2    --------->ANAC58           <---------ANAC58     <---------ARR14(2)  --------->ARR14(3)
-------ATERF1(1) --------->ANAC46     <---------ANAC46     --------->ARR14(2)  <---------ARR11(3)
----ATERF1(1)    --------->ANAC58    <------NtERF2      --------->YAB1         <---------ARR14(2)
------>At4g35610 --------->ANAC58  --------->ALFIN1  --------->YAB1            --------->ARR14(2) <-
 
cgccgcaaacgcaaacgcaaacgcatcgtttagcgaccgtggcgttatcgtcccaagaatcatattcgtagctgaagacgacgatcttgagtctggaaac  22787700
                                                                             <---------DOF5.7(2)
                                                                             --------->MYB52(1)
                                                                      --------->DEAR3(1)
                                                                    --------->ABI4(1)
                                                                    ------>NtERF2
                                                                   --------->DEAR3(1)
         <---------ARR11(3)                                        --------->ANAC46
         --------->ARR11(3)                                       --------->MYB46(3)
         <---------ARR14(3)                                      <---------At5g28300
  <-------GAMYB                                                 <-----------GT1
 <---------MYB46(3)                                          <---------GLK1(1)
<------NtERF2                                                --------->GLK1(1)       <---------ANAC46
----HSFC1(2)             --------->YAB1                     <---------ARR11(3)    ----------->HVH21
--->HSFC1(2)      --------->WOX13(1)  --------->TOE1(3)     --------->ARR11(3)    --------->ALFIN1
--------DEAR3(1)<---------YAB1        --------->TOE2(3) ---------->DOF2--------->LBD16        ------
 
gtcgtcgttggaggtcttgatcattcagtcatcaactcttaccctaaattccatttcactaaagatatcaccgccgtagtaaacggtgatgggtttcacg  22787800
                           ------>ZmHOX2a(2)                          <---------ANAC58
                   --------->ALFIN1                                   <---------ANAC58
                 <---------bZIP60(2)                           --------->YAB1
                 <---------O2                                  <------ZmHOX2a(1)
                 --------->O2                                <---------TOE1(3)
                 <---------ANAC46                      --------->ARR11(3)   <---------ZAT6
              ----------->HVH21          <-------TEIL  <---------ARR11(3) <---------ANAC46
--->ANAC46  --------->CCA1(2)        <---------------AtSPL8  <---------TOE2(3)    --------->ZAT6<---
 
acggagaaggaagagagacgacgtgttcgatctgtttatgtgagtacatggaagaagagatgttaaggatgatgcctgagtgtaaacactacttccatgt  22787900
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AGI:  At3g61545.1   
Description:  pre-tRNA. tRNA-Glu (anticodon: CTC)
Range:  from: 22786897    to: 22786969    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At3g61550.1   
Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL3K (ATL3K) [Arabidopsis Thaliana] (GB:Q9M313); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G46160.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABD28581.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)
Range:  from: 22787376    to: 22788200    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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