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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
GLK1(2)
<---------
GLK1(2)
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
--------->
LBD16
<---------
ARR14(2)
<---------
ARR14(3)
<---------
ARR11(3)
<---------
LBD16
--------->
ARR14(2)
--------->
ARR11(3)
<---------
ARR14(2)
------->
TEIL
<---------
ANAC46
--------->
ARR14(3)
<---------
ARR14(3)
--------->
WRKY38(1)
<---------
MYB46(3)
<---------
ARR11(3)
--------->
AGP1
<-----------
HVH21
--------->
WRKY12
--------->
MYB55(2)
--------->
ANAC58
--------->
ARR11(3)
<---------
ANAC58
----------->
HVH21
<---------
DEAR3(1)
--------->
ANAC58
<---------
GLK1(2)
<---------
ANAC46
<---------
At4g35610
<---------
AtMYB61
--------->
WRKY12
--------->
ARR14(3)
<---------
ANAC58
--------->
At4g35610
--------->
ALFIN1
----------->
HVH21
----------->
ARR10
<---------
DEAR3(2)
<---------
MYB59
<---------
DEAR3(1)
--------->
WRKY38(1)
----
DOF2
---------->
DOF2
<---------
ANAC46
------->
TEIL
--------->
DOF5.7(2)
agtcaagatcctgaaagaatcgtcgcttgggtagtcgtggacctgaccggaattgatgcatcggtggtggaaatgcagagcatcgttgacaagaccttgt
22577300
<---------
ANAC46
<---------
ANAC58
<------
MYB46(1)
<---------
ANAC58
<------
MYB83
<---------
MYB46(3)
--------->
MYB59
<---------
MYB52(1)
<-------
GAMYB
<-----------
RAV1(1)
--------->
MYB55(2)
<---------
WOX13(1)
--------->
ANAC46
--------->
ATHB12
--------->
YAB1
<---------
REM1(1)
<----------
DOF2
<---------
YAB1
<------
ZmHOX2a(2)
<-------
TEIL
--------->
HSFB2a(2)
<---------
ARR14(2)
===================
HOX2a_HOX2a
--------->
ARR14(1)
<---------
MYB46(3)
<---------
At4g35610
<---------
ARR11(3)
--------->
ARR14(2)
--------->
ANAC58
--------->
ARR14(2)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ANAC58
<---------
TOE1(3)
--------->
ARR11(3)
------>
ZmHOX2a(1)
<---------
GLK1(2)
<---------
HSFB2a(2)
<---------
TOE2(3)
>>>>>>>>>
TBF1
--------->
ARR11(3)
<---
tggaaaccagattcgatgatgtagttccagcaatggctgttgggtctgaggttatgctgattgaagaagaactcgtagagatcataagcgtccttgagcc
22577400
--
<---
----
<---
<---
----
----
<---
<---
<----
------
------
-------
-------
<------
-------
-------
-------
--------
--------
--------
--------
--------
----------->
HVH21
<--------
--------->
LBD16
<--------
----------->
GT1
--------->
SPL7
--------->
ANAC55(1)
--------->
ZAT18
--------->
ANAC55(2)
<---------
WOX13(1)
<---------
ZAT18
<---------
ANAC55(2)
<---------
WOX13(1)
<---------
ZAT14
--------->
ANAC46
<---------
ATHB12
--------->
WRKY38(1)
<---------
ANAC58
<---------
LBD16
<---------
At4g35610
<---------
MYB46(3)
--------->
MYB52(1)
-----
-------
DOF2
------>
NtERF2
<-----------
RAV1(1)
----------->
GT1
<---------
ANAC58
-
ttttatcccgtaacatgcctccgatgatggattgacatattgttgttgttgactccgatttgatgctggtgaaaacagccaaacgagcgtacttcgccgc
22577500
<---------
ARR14(3)
--------->
ARR14(2)
--------->
ARR14(3)
--------->
ARR11(3)
<---------
ARR14(2)
<---------
ARR11(3)
<---------
GLK1(1)
------->
ALFIN1
------
ANAC46
----->
O2
------
ANAC58
------
TGA1a
----->
TGA1a
----->
DEAR3(1)
------
O2
------
ANAC58
--
NtERF2
>
NtERF2
------>
ZmHOX2a(2)
--->
ABI4(1)
-->
DEAR3(1)
-->
RAP2.3(2)
---
DEAR3(1)
-->
RRTF1(3)
<---------
ARR14(2)
-->
ANAC46
--------->
GLK1(2)
-->
RAP2.3(3)
--------->
WOX13(1)
->
ORA47(2)
<------
NtERF2
->
ATERF1(1)
<---------
At4g35610
--------->
RAP2.6(2)
->
DEAR4(2)
--------->
ANAC58
------>
NtERF2
-
->
ERF1
<------
ZmHOX2a(2)
<---------------
AtSPL3
<---------
ATERF1(2)
<------
ZmHOX2a(2)
->
RAP2.3(1)
--------->
ANAC46
--------->
ATERF1(2)
--------->
ARR14(2)
-
ATERF1(1)
--------->
ANAC58
<------
ZmHOX2a(2)
----------->
HVH21
<---------
ARR14(2)
-
RAP2.3(1)
<---------
ALFIN1
--------->
YAB1
<---------
DEAR3(1)
--------->
ARR11(3)
---->
ATERF1(1)
--------->
At4g35610
--------->
ANAC58
<---------
RAP2.6(2)
<---------
ARR11(3)
-------->
REM1(2)
------->
TEIL
--------->
ANAC58
--------->
RAP2.6(3)
--------->
ICU4
------>
ZmHOX2a(2)
cgtgtcgagatccccaacgcatctgatcaagtacgagaccctcaagcatagatcagaagggcggcaatctgggtttgacattatgtcttccgatcttctt
22577600
--------->
DEAR4(1)
----------->
HVH21
--------->
DEAR3(1)
--------->
RAP2.3(3)
<---------
ETT(1)
--------->
DREB2C(2)
--------->
ATERF1(1)
--------->
ORA47(2)
<------
NtERF2
<---------
ATERF1(1)
--------->
DEAR3(1)
<---------
At4g35610
<---------
ZAT14
--------->
ZAT14
--------->
ALFIN1
--------->
ATERF1(1)
<------
NtERF2
<------
NtERF2
------>
NtERF2
--------->
ATERF1(1)
<---------
ATERF1(1)
<---------
ATERF1(1)
<---------
MYB46(3)
------>
NtERF2
--------->
ICU4
<---------
ORA47(2)
<---------
RAP2.3(1)
<---------
DEAR4(2)
<---------
RAP2.3(2)
<------
NtERF2
<---------
DEAR3(2)
--------->
ATERF1(2)
--------->
ANAC58
<---------
DEAR3(1)
<---------
ATERF1(2)
<---------
ICU4
--------->
ALFIN1
<---------
RAP2.6(2)
--------->
ATHB12
<---------
DREB2C(2)
<---------
DEAR3(1)
--------->
ATHB51
----------->
GT1
<---------
ABI4(1)
<---------
YAB1
<------
ZmHOX2a(2)
--------->
ANAC46
--------->
ZAT14
--------->
ANAC58
--------->
RAP2.3(1)
--------->
SPL7
<---------
ICU4
--------->
ANAC58
<---------
ZAT14
--------->
ANAC58
--------->
DEAR3(2)
------>
NtERF2
<---------
YAB1
--------->
ANAC58
<---------
SPL7
<---------
DEAR3(1)
--------->
ORA47(1)
<-----------
HVH21
--------->
ANAC58
<---------
ZAT14
-------->
SPL7
<---------
ABI4(2)
--------->
ATERF1(1)
<---------
YAB1
<------
ZmHOX2a(1)
------
ggcacggcggtgcagaagcgccgaccaagattgaggcggccgatcagagacat
tattattgcaggccagcaagacgaggactggctgtacagaaaaatgg
22577700
----------
--------->
ARR14(2)
------->
TEIL
<-----------
ARR10
<---------
YAB1
<---------
ARR14(2)
-------->
ATHB1
<---------
ARR11(1)
<---------
ICU4
<---------
CCA1(2)
<---------
ATHB51
<---------
ANAC55(2)
<---------
AHL20(2)
--------->
ANAC58
--------->
ICU4
================
--------->
AHL20(2)
--------->
ANAC55(1)
<---------
AHL20(1)
------>
NtERF2
--------->
ANAC58
<---------
AHL20(2)
<---------
DEAR3(1)
--------->
ANAC55(2)
--------->
AHL20(1)
--------->
RAP2.6(3)
--------->
TGA1a
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ANAC46
<---------
AHL20(2)
<---------
AHL20(2)
--------->
O2
--------->
AHL20(2)
*
TSS
--------->
AHL20(2)
<---------
O2
----->
GT1
<---------
AHL20(2)
----------->
GT1
--------->
MYB52(1)
--------->
CCA1(2)
aaaataaattattaaaactc
agactaagtgagacgaatagaatgaaaaataaataaaacgacggctagggttttggacaagagagacacgtatcttctta
22577800
--------->
AHL20(2)
<---------
AHL20(2)
<----------
DOF2
--------->
ARR11(3)
<-----------
RAV1(2)
<----------
DOF2
<---------
ARR11(3)
--------->
ANAC58
<---------
ARR11(3)
--------->
ICU4
--------->
RAP2.6(3)
--------->
ARR11(3)
<---------
AHL20(1)
--------->
ANAC58
<
<---------
ARR14(2)
--------->
AHL20(1)
--------->
ANAC46
<--------
--------->
CCA1(1)
>>>>>>>>>
RAP2.2
--------->
AHL20(2)
-----------
--------->
RVE1(1)
<---------
ARR11(3)
--------->
AHL20(2)
--------->
YAB1
--
----->
AGL15
<-----------
GT1
<-----------
ARR10
<---------
AHL20(2)
<---------------------
WRI1
================
bZIP_DOF
--------->
ARR11(3)
--------->
AHL20(2)
<---------
At4g35610
--------
gagaatatctttttttttttctttctaattcttagagaatatctaaacatgaaaatattaaataaaaaaatacggcagacgatgagaaccatgagattct
22577900
<---------
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ATHB51
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ICU4
<---------
AHL20(1)
<---------
YAB1
<---------
AHL20(2)
<---------
MYB46(3)
---------
ICU4
--------->
AHL20(2)
<---------
TOE2(2)
-
GLK1(2)
--------->
AHL20(1)
<---------
TOE1(2)
>
ARR10
--------->
AHL20(2)
<---------
AHL20(2)
<---------
TOE2(3)
---->
ZmHOX2a(1)
--------->
YAB1
--------->
AHL20(2)
<----------
DOF2
---------->
DOF2
->
GLK1(2)
--------->
AHL20(2)
<-----------
RAV1(1)
------>
ZmHOX2a(1)
<---------
At4g35610
cctcattatttatatgaattatattaaatataaatttatattttgtgttgctaaattcttcttttagactctcctcaaagtcttaggttgttcagcaact
22578000
--------->
ICU4
--------->
ANAC55(2)
-------
--------->
ANAC58
<---------
ARR14(2)
--------
--------->
ANAC58
--------->
ARR14(2)
<--------
<---------
ANAC55(2)
--------->
GLK1(2)
<----------
DOF2
<---------
ARR11(3)
--------->
ANAC55(1)
<---------
ARR11(1)
--------->
ARR11(3)
--------->
ARR11(3)
--------->
ANAC46
<-----------
ARR10
<---------
GLK1(1)
--------->
ICU4
--------->
CCA1(2)
------->
TEIL
--------->
GLK1(1)
--------->
AHL20(2)
--------->
DAG2
<---------
ARR14(1)
---------->
DOF2
----------->
GT1
--------->
DAG2
<---------
At4g35610
---------->
DOF2
<---------
AHL20(2)
---------->
DOF2
--------->
At4g35610
--------->
ANAC46
<---------
ARR11(3)
--------->
AHL20(2)
cgaaaaaggtatacgtaattactcagttgatgtccgaatctattcacacaaaaagaaaggaaatcttttttttttttttgatataaatgtaaatatcatt
22578100
------>
ZmHOX2a(2)
<---------
GLK1(1)
<------
ZmHOX2a(2)
--------->
MYB52(1)
<---------
ARR14(2)
------->
GAMYB
--------->
ARR14(2)
--------->
MYB46(3)
<-----------
ARR10
<---------
ARR11(3)
<---------
MYB52(2)
--------->
ARR11(3)
--------->
ARR11(3)
----------->
RAV1(1)
---------->
DOF2
<----------
DOF2
<----------
ID1
-->
TOE2(3)
<---------
ARR11(3)
<---------
ANAC58
--------->
AHL20(2)
<---------
WOX13(1)
->
ATHB12
<------
ZmHOX2a(1)
<---------
ANAC58
---------->
DOF2
--------->
ANAC58
--
-
YAB1
<---------
TOE2(3)
--------->
TOE2(2)
----------------->
AG
--------->
ANAC58
------
agaaatgaaaagtttaggatctacgtagataaaacctatggcttttgagaccttgccaaaaaagaataaaaaacaaggcaacaaacagattgacatcaaa
22578200
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AGI:
At3g60980.1
Description:
pentatricopeptide (PPR) repeat-containing protein. similar to GRP23 (GLUTAMINE-RICH PROTEIN23), binding [Arabidopsis thaliana] (TAIR:AT1G10270.1); similar to ACT11D09.4 [Cucumis melo] (GB:AAS80150.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:
from: 22576284
to: 22577720
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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