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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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              --------->GLK1(2)
             <---------GLK1(2)
       ------>ZmHOX2a(1)
     ------>ZmHOX2a(2)
    <------ZmHOX2a(2)
   --------->ARR14(2)                       --------->LBD16       <---------ARR14(2)     <---------ARR14(3)
   <---------ARR11(3)                     <---------LBD16         --------->ARR14(2)     --------->ARR11(3)
   <---------ARR14(2)               ------->TEIL               <---------ANAC46          --------->ARR14(3)
   <---------ARR14(3)             --------->WRKY38(1)        <---------MYB46(3)          <---------ARR11(3)
   --------->AGP1<-----------HVH21--------->WRKY12           --------->MYB55(2)        --------->ANAC58
   --------->ARR11(3)<---------ANAC58  ----------->HVH21    <---------DEAR3(1)         --------->ANAC58
   <---------GLK1(2) <---------ANAC46<---------At4g35610    <---------AtMYB61     --------->WRKY12
   --------->ARR14(3)<---------ANAC58--------->At4g35610    --------->ALFIN1      ----------->HVH21
 ----------->ARR10  <---------DEAR3(2)<---------MYB59    <---------DEAR3(1)       --------->WRKY38(1)
----DOF2 ---------->DOF2       <---------ANAC46        ------->TEIL              --------->DOF5.7(2)
 
agtcaagatcctgaaagaatcgtcgcttgggtagtcgtggacctgaccggaattgatgcatcggtggtggaaatgcagagcatcgttgacaagaccttgt  22577300
                                      <---------ANAC46
                                      <---------ANAC58
                                      <------MYB46(1)
                                      <---------ANAC58
                                      <------MYB83
                                     <---------MYB46(3)
                                     --------->MYB59
                                   <---------MYB52(1)
                                  <-------GAMYB
                                 <-----------RAV1(1)
                                 --------->MYB55(2)     <---------WOX13(1)
                        --------->ANAC46              --------->ATHB12        --------->YAB1
               <---------REM1(1) <----------DOF2     <---------YAB1          <------ZmHOX2a(2)
        <-------TEIL   --------->HSFB2a(2)     <---------ARR14(2)            ===================HOX2a_HOX2a
       --------->ARR14(1)        <---------MYB46(3)<---------At4g35610      <---------ARR11(3)
      --------->ARR14(2)--------->ANAC58       --------->ARR14(2)<---------ARR11(3)
      <---------ARR14(2)--------->ANAC58    <---------TOE1(3)    --------->ARR11(3)      ------>ZmHOX2a(1)
      <---------GLK1(2)<---------HSFB2a(2)  <---------TOE2(3) >>>>>>>>>TBF1 --------->ARR11(3)  <---
 
tggaaaccagattcgatgatgtagttccagcaatggctgttgggtctgaggttatgctgattgaagaagaactcgtagagatcataagcgtccttgagcc  22577400
                                                                                                  --
                                                                                                <---
                                                                                                ----
                                                                                                <---
                                                                                                <---
                                                                                                ----
                                                                                                ----
                                                                                                <---
                                                                                                <---
                                                                                               <----
                                                                                              ------
                                                                                              ------
                                                                                             -------
                                                                                             -------
                                                                                             <------
                                                                                             -------
                                                                                             -------
                                                                                             -------
                                                                                            --------
                                                                                            --------
                                                                                            --------
                                                                                            --------
                                                                                            --------
      ----------->HVH21                                                                    <--------
     --------->LBD16                                                                       <--------
    ----------->GT1                                                                   --------->SPL7
    --------->ANAC55(1)                                                             --------->ZAT18
    --------->ANAC55(2)    <---------WOX13(1)                                       <---------ZAT18
    <---------ANAC55(2)<---------WOX13(1)                                           <---------ZAT14
    --------->ANAC46<---------ATHB12         --------->WRKY38(1)                   <---------ANAC58
   <---------LBD16<---------At4g35610     <---------MYB46(3)                 --------->MYB52(1)-----
-------DOF2    ------>NtERF2        <-----------RAV1(1)        ----------->GT1     <---------ANAC58-
 
ttttatcccgtaacatgcctccgatgatggattgacatattgttgttgttgactccgatttgatgctggtgaaaacagccaaacgagcgtacttcgccgc  22577500
     <---------ARR14(3)
     --------->ARR14(2)
     --------->ARR14(3)
     --------->ARR11(3)
     <---------ARR14(2)
     <---------ARR11(3)
    <---------GLK1(1)
------->ALFIN1
------ANAC46
----->O2
------ANAC58
------TGA1a
----->TGA1a
----->DEAR3(1)
------O2
------ANAC58
--NtERF2
>NtERF2------>ZmHOX2a(2)
--->ABI4(1)
-->DEAR3(1)
-->RAP2.3(2)
---DEAR3(1)
-->RRTF1(3)                                                   <---------ARR14(2)
-->ANAC46                                                     --------->GLK1(2)
-->RAP2.3(3)                                                 --------->WOX13(1)
->ORA47(2)                                                 <------NtERF2
->ATERF1(1)      <---------At4g35610                      --------->RAP2.6(2)
->DEAR4(2)   --------->ANAC58                             ------>NtERF2                            -
->ERF1<------ZmHOX2a(2) <---------------AtSPL3           <---------ATERF1(2)             <------ZmHOX2a(2)
->RAP2.3(1)  --------->ANAC46                            --------->ATERF1(2)            --------->ARR14(2)
-ATERF1(1)   --------->ANAC58                   <------ZmHOX2a(2)      ----------->HVH21<---------ARR14(2)
-RAP2.3(1)<---------ALFIN1                --------->YAB1 <---------DEAR3(1)             --------->ARR11(3)
---->ATERF1(1)   --------->At4g35610    --------->ANAC58 <---------RAP2.6(2)            <---------ARR11(3)
-------->REM1(2)------->TEIL            --------->ANAC58--------->RAP2.6(3) --------->ICU4------>ZmHOX2a(2)
 
cgtgtcgagatccccaacgcatctgatcaagtacgagaccctcaagcatagatcagaagggcggcaatctgggtttgacattatgtcttccgatcttctt  22577600
                 --------->DEAR4(1)
                 ----------->HVH21
                 --------->DEAR3(1)
                 --------->RAP2.3(3)
                 <---------ETT(1)
                 --------->DREB2C(2)
                --------->ATERF1(1)
                --------->ORA47(2)
                <------NtERF2
               <---------ATERF1(1)
              --------->DEAR3(1)
          <---------At4g35610
       <---------ZAT14
       --------->ZAT14
      --------->ALFIN1
     --------->ATERF1(1)          <------NtERF2
     <------NtERF2------>NtERF2   --------->ATERF1(1)
    <---------ATERF1(1)          <---------ATERF1(1)
    <---------MYB46(3)           ------>NtERF2  --------->ICU4
    <---------ORA47(2)           <---------RAP2.3(1)
    <---------DEAR4(2)          <---------RAP2.3(2)             <------NtERF2
    <---------DEAR3(2)          --------->ATERF1(2)        --------->ANAC58
   <---------DEAR3(1)           <---------ATERF1(2) <---------ICU4
   --------->ALFIN1             <---------RAP2.6(2) --------->ATHB12
   <---------DREB2C(2)          <---------DEAR3(1)  --------->ATHB51                  ----------->GT1
  <---------ABI4(1)    <---------YAB1  <------ZmHOX2a(2)   --------->ANAC46         --------->ZAT14
--------->ANAC58--------->RAP2.3(1)--------->SPL7<---------ICU4--------->ANAC58     <---------ZAT14
--------->ANAC58--------->DEAR3(2)------>NtERF2 <---------YAB1 --------->ANAC58   <---------SPL7
<---------DEAR3(1)--------->ORA47(1)  <-----------HVH21    --------->ANAC58       <---------ZAT14
-------->SPL7<---------ABI4(2) --------->ATERF1(1) <---------YAB1         <------ZmHOX2a(1)   ------
 
ggcacggcggtgcagaagcgccgaccaagattgaggcggccgatcagagacattattattgcaggccagcaagacgaggactggctgtacagaaaaatgg  22577700
                                                                                          ----------
                                                                                       --------->ARR14(2)
                                                                                       ------->TEIL
                                                                                       <-----------ARR10
       <---------YAB1                                                                  <---------ARR14(2)
     -------->ATHB1                                                                    <---------ARR11(1)
     <---------ICU4                                                                   <---------CCA1(2)
    <---------ATHB51                                                                <---------ANAC55(2)
    <---------AHL20(2)                                                              --------->ANAC58
    --------->ICU4                                                                  ================
    --------->AHL20(2)                                                              --------->ANAC55(1)
 <---------AHL20(1)                                       ------>NtERF2             --------->ANAC58
 <---------AHL20(2)                                      <---------DEAR3(1)         --------->ANAC55(2)
 --------->AHL20(1)                                     --------->RAP2.6(3)         --------->TGA1a
 --------->AHL20(2)                           --------->AHL20(2)                    --------->ANAC46
<---------AHL20(2)                           <---------AHL20(2)                     --------->O2
--------->AHL20(2) *TSS                      --------->AHL20(2)                     <---------O2
----->GT1<---------AHL20(2)           ----------->GT1  --------->MYB52(1)       --------->CCA1(2)
 
aaaataaattattaaaactcagactaagtgagacgaatagaatgaaaaataaataaaacgacggctagggttttggacaagagagacacgtatcttctta  22577800
                                                              --------->AHL20(2)
                                                              <---------AHL20(2)
                 <----------DOF2                  --------->ARR11(3)   <-----------RAV1(2)
     <----------DOF2                              <---------ARR11(3)--------->ANAC58
  <---------ARR11(3)                              --------->ICU4   --------->RAP2.6(3)
  --------->ARR11(3)                              <---------AHL20(1)--------->ANAC58               <
  <---------ARR14(2)                              --------->AHL20(1)--------->ANAC46       <--------
 --------->CCA1(1)                    >>>>>>>>>RAP2.2      --------->AHL20(2)            -----------
 --------->RVE1(1)                  <---------ARR11(3)    --------->AHL20(2)   --------->YAB1     --
----->AGL15   <-----------GT1       <-----------ARR10  <---------AHL20(2) <---------------------WRI1
================bZIP_DOF            --------->ARR11(3)--------->AHL20(2) <---------At4g35610--------
 
gagaatatctttttttttttctttctaattcttagagaatatctaaacatgaaaatattaaataaaaaaatacggcagacgatgagaaccatgagattct  22577900
                                <---------AHL20(2)
                            <---------AHL20(2)
                 <---------YAB1 --------->AHL20(2)
      <---------AHL20(2)  --------->AHL20(2)
  --------->ATHB51   <---------AHL20(2)
  --------->AHL20(2)--------->AHL20(2)
 --------->ICU4 <---------AHL20(1)
 <---------YAB1 <---------AHL20(2)                                                  <---------MYB46(3)
---------ICU4   --------->AHL20(2)                                              <---------TOE2(2)
-GLK1(2)        --------->AHL20(1)                                              <---------TOE1(2)
>ARR10--------->AHL20(2)  <---------AHL20(2)                                    <---------TOE2(3)
---->ZmHOX2a(1)--------->YAB1 --------->AHL20(2)         <----------DOF2---------->DOF2
->GLK1(2)      --------->AHL20(2)        <-----------RAV1(1)          ------>ZmHOX2a(1)   <---------At4g35610
 
cctcattatttatatgaattatattaaatataaatttatattttgtgttgctaaattcttcttttagactctcctcaaagtcttaggttgttcagcaact  22578000
              --------->ICU4
         --------->ANAC55(2)                                                                 -------
         --------->ANAC58        <---------ARR14(2)                                         --------
         --------->ANAC58        --------->ARR14(2)                                        <--------
         <---------ANAC55(2)     --------->GLK1(2)           <----------DOF2              <---------ARR11(3)
         --------->ANAC55(1)     <---------ARR11(1)       --------->ARR11(3)              --------->ARR11(3)
         --------->ANAC46        <-----------ARR10       <---------GLK1(1)              --------->ICU4
     --------->CCA1(2)           ------->TEIL            --------->GLK1(1)           --------->AHL20(2)
  --------->DAG2                <---------ARR14(1) ---------->DOF2                 ----------->GT1
 --------->DAG2      <---------At4g35610       ---------->DOF2                 <---------AHL20(2)
---------->DOF2      --------->At4g35610  --------->ANAC46<---------ARR11(3)   --------->AHL20(2)
 
cgaaaaaggtatacgtaattactcagttgatgtccgaatctattcacacaaaaagaaaggaaatcttttttttttttttgatataaatgtaaatatcatt  22578100
                ------>ZmHOX2a(2)
               <---------GLK1(1)
               <------ZmHOX2a(2)                                               --------->MYB52(1)
              <---------ARR14(2)                                              ------->GAMYB
              --------->ARR14(2)                                             --------->MYB46(3)
              <-----------ARR10              <---------ARR11(3)              <---------MYB52(2)
              --------->ARR11(3)             --------->ARR11(3)            ----------->RAV1(1)
    ---------->DOF2                   <----------DOF2                     <----------ID1
-->TOE2(3)    <---------ARR11(3)     <---------ANAC58          --------->AHL20(2)    <---------WOX13(1)
->ATHB12     <------ZmHOX2a(1)       <---------ANAC58   ---------->DOF2--------->ANAC58           --
-YAB1      <---------TOE2(3)   --------->TOE2(2)   ----------------->AG--------->ANAC58       ------
 
agaaatgaaaagtttaggatctacgtagataaaacctatggcttttgagaccttgccaaaaaagaataaaaaacaaggcaacaaacagattgacatcaaa  22578200
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AGI:  At3g60980.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to GRP23 (GLUTAMINE-RICH PROTEIN23), binding [Arabidopsis thaliana] (TAIR:AT1G10270.1); similar to ACT11D09.4 [Cucumis melo] (GB:AAS80150.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 22576284    to: 22577720    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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