Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                             --------                                                                                          --------->DEAR3(1)                                                                                          --------->TGA1a                                                                                          <---------ANAC58                                                                                          <---------ANAC46                                                                                          <---------TGA1a                                                                                          <---------O2                                                                                          <---------ANAC58                                                                                          --------->O2                                                                                         <------NtERF2                                                                                         --------->ATERF1(1)                                                                                        ------>NtERF2                                                                             <---------MYB59---------                                                                            --------->At4g35610    <-                                                                   --------->At4g35610  <---------RAP2.6(3)                                                                   <---------At4g35610 --------->DEAR3(1)       <---------At4g35610           <---------ALFIN1              --------->ZAT2      --------->ATERF1(2) ------->DOF2         <---------ANAC55(2)                          <---------ZAT2      <---------ATERF1(2) -->LBD16<---------ATHB12         <---------ZAT18             --------->ANAC46        <---------RAP2.6(2) --HSFB2a(2)          --------->ANAC55(2)  <----------DOF2    --------->ANAC58    ==================bZIP_DOF ->HSFB2a(2)<---------WOX13(1)    --------->ZAT14             --------->ANAC58    <----------DOF2 <--   aaaagcctccgatgatggattaatatgtaatctctgtgaacaccgctttgattctggtgaagacaggccagctaaacgagctaactttgccgccgtgtcg  22546300                                                                                     <---------CCA1(2)                                                                             <---------ETT(1)                                                                             ----------->HVH21                                                                            --------->DEAR3(2)                                                                            =========================                                                                            =====================HOX2a_HOX2a                                                                            ------>ZmHOX2a(2)                                                                           ==========================                                                                           ======================HOX2a_HOX2a                                                                           <------ZmHOX2a(2)                                                                          <---------ARR14(2)                                                                          --------->ARR14(2)                                                                      ------>ZmHOX2a(2)                                                                      ===========================HOX2a_HOX2a     --------->MYB52(1)                                              ============================HOX2a_HOX2a    ----------->HVH21                                                <------ZmHOX2a(2) ------>ZmHOX2a(2)                                                  <---------ARR14(2) ------ZmHOX2a(2)                                                   --------->ARR11(3) ------->ARR11(3)                                            ======================HOX2a_HOX2a ------->ARR14(2)      --------->ANAC46                      =====================HOX2a_HOX2a  <----- --------ARR11(3)    --------->REM1(1)                       ================HOX2a_HOX2a     <------- ->REM1(2)       <---------At4g35610                         <------ZmHOX2a(1)----------->RAV1(1) >ALFIN1  --------->AGP1      --------->ZAT14                ===============HOX2a_HOX2a   ------>ZmHOX2a(1) --------ARR14(2)--------->At4g35610               <-------TEIL     <---------ARR11(3)<---------ARR14(2) -------GLK1(1)--------->REM1(1)                  <-----------GT1   --------->ARR14(2)--------->ARR14(2)   agatccctaacagagctacagctacaagactctccagtctccattctccaatatacatccctaggacgacgatctggatccgacattatatcctccgctc  22546400             --------->ZAT14             --------->ABI4(2)             <---------ZAT14             <---------ZAT18           --------->ATERF1(1)           <------NtERF2          <---------ORA47(2)          <---------DEAR3(2)          <---------ATERF1(1)          <---------DEAR4(2)         <---------DREB2C(2)         <---------DEAR3(1)         --------->ALFIN1        <---------ABI4(1)      <---------DEAR3(1)    <<<<<<<ZML2   <---------ZAT14         <------ZmHOX2a(2) <---------HSFB2a(2)                     --------->ARR14(2) ------>ZmHOX2a(1)--------->ZAT14        <---------ARR14(2)                         ------>NtERF2 --------->HSFB2a(2)                   <---------MYB46(3)                           --------->LBD16 <---------HSFC1(1)                  <---------LBD16                               --------->ANAC46 --------->HSFC1(1)                --------->ANAC58 --------->ATHB12              <---------LBD16 =======HOX2a_HOX2a                <---------DEAR3(1)                            <---------ATERF1(1) =======HOX2a_HOX2a      ---------->DOF2<------NtERF2                 --------->WRKY38(1)     <------ -----DOF2<---------MYB46(3)       --------->ANAC58<---------YAB1     --------->WRKY45     <--------- --At4g35610--------->ALFIN1      --------->SPL7   --------->ICU4   <----------DOF2--------->DEAR3(1)   ttcctagaacggcggtgcagttcagagaaaagatggcacggcggatcagagacatgattcgaaaaccccgctttgactctggtctccgcctctctggtgg  22546500                          <---------AtMYB61                      ------->MYC2                      <-------MYC2                      <-------MYC3                      ------->MYC3                     =========================================bZIP_DOF                     <---------ANAC55(2)                     <---------O2                     --------->TGA1a                     --------->ANAC55(2)                     <---------ANAC46                     =============MYC_MYB                     <---------TGA1a                     --------->O2             --------->LBD16            <---------DEAR3(1)           <------NtERF2 <--------P    <---------AHL20(1)           --------->ATERF1(1)        --------->AHL20(2)                                        -----          <------NtERF2 --------->REM1(2)   --------->ATHB12                                    <----         --------->DEAR3(1)          <---------YAB1                                             <----         <---------DEAR3(1)         --------->AHL20(2)                                          -----         --------->ATERF1(2)       <--------HAHB4                                               <----         <---------ATERF1(2)       <---------ICU4                                               -----        --------->ATERF1(1)<------MYB83<---------AHL20(2)                                      <-----        <---------RAP2.6(2)<------MYB46(1) <-------TEIL                                        <-----    <--------P<---------MYB52(1)  --------->ICU4       <---------HSFB2a(2)                   <-------    ===========================MYC_MYB--------->YAB1   --------->HSFB2a(2)    ------->TEIL   -------- ---ANAC46<---------ATERF1(1)     <---------YAB1   <----------DOF2   <------ZmHOX2a(2)       <------- --RAV1(1)------>NtERF2--------->ALFIN1--------->AHL20(1)           --------->AGP1           <-------   agacgagttggccgccggtgttcacgtgtaggtctcattattatattcatgggctttttagaaacaaatagatccaaatggaccgatttgaaaatgcgta  22546600                                                   <---------ICU4       <----------DOF2                          <--------HAHB4 ---->ARR14(2)                                  <---------ICU4 -----ARR11(1)                                 <---------YAB1 -----ARR14(2)                            --------->WOX13(1)           <-------PIF5 ---->GLK1(2)                            --------->MYB46(3)            ------->PIF5 -------ARR10                           ------>MYB46(1)               <---------At4g35610 -->TEIL                         <----------DOF2--------->YAB1        --------->At4g35610 ----ARR14(1)            --------->AHL20(2)    --------->ICU4         ----------->RAV1(2) ----CCA1(2)             <---------AHL20(2)  --------->YAB1    <---------AHL20(2) --ANAC58            ----------->GT1    ------>MYB83          --------->AHL20(2) ->ANAC55(2)    --------->ANAC58--------->TOE2(3) --------->ICU4     ------->TEIL --ANAC55(2)    --------->ANAC58--------->TOE1(3) <---------YAB1   <---------ZAT18 ------->TEIL  <--- --ANAC58     ---------->DOF2<-----------GT1 <---------ICU4<---------RVE1(1)     *TSS           -----   tctatgggcctttgaaaaaagccatgttaaattacctttaccatccatcatcattatcgcgatatttaatgcacctgcaaaactgaaccctaagtgatca  22546700                        --------->ANAC58                        --------->ANAC58                                                            <                     <---------SPL7                                                            ------                   <---------------AtSPL3                                                    --------                <------NtERF2                                                                ========                ------>NtERF2                                                                <-------               --------->RAP2.6(2)                                                           ------>ZmHOX2a(2)               --------->RAP2.3(2)                                                           <-------               --------->DEAR3(1)                                                            --------               --------->RAP2.3(3)                                                          =========               --------->RRTF1(2)                               <---------ANAC58           <---------ARR11(3)             <---------ATERF1(1)                                <---------ANAC58           --------->ARR11(3)             ------>NtERF2                                     <-----------------------TaNAC69(2)  --             --------->LBD16                              <---------ANAC46                 <---------ARR14(2)             --------->At4g35610                          <---------ANAC58                 --------->ARR14(2)            --------->ANAC46                          <---------MYB52(1)             <------ZmHOX2a(1)            <---------ALFIN1                          <-------GAMYB                  ==============HOX2a_HOX2a            --------->DEAR3(1)                       --------->LBD16                 ===============HOX2a_HOX2a          <---------ATERF1(1)                       <---------ANAC46            ------>MYB46(1)======          ------>ZmHOX2a(1)                        <---------LBD16            --------->MYB46(3)   ==         <---------ALFIN1                        <---------ARR14(2)      <---------ANAC58 <---------GLK1(1)      <---------ALFIN1  --------->ANAC46       <---------MYB46(3)        <---------ANAC58 --------->GLK1(1) --------HVH21 --------->RRTF1(3)        ---------->DOF2  <---------ANAC58<---------SPL7 ----------->ARR10 ---->WOX13(1)--------->RAP2.3(1)    <---------ARR14(1)<--------P  <-------TEIL ------>MYB83<------ZmHOX2a(2)   gtcatgtccctcctccgccgcattgtacgaaattcgaccgtatcaaaggctgttccggttgcgaaggcgttcatgccttacccactaggaagagatcctt  22546800       ---------->DOF2        --------->At4g35610 ---------ALFIN1          <-----------HVH21 >ZmHOX2a(1)             --------->WOX13(1) ->HSFC1(2)           <---------ARR14(2) =====HOX2a_HOX2a     --------->ARR14(2) --HSFC1(2)          --------->GLK1(1)                              <-----------HVH21 --HSFB2a(1)        <---------MYB52(1)                    <---------ZAT14 ->HSFB2a(1)       --------->LBD16            <------NtERF2--------->ANAC46       ------>ZmHOX2a(2) =====HOX2a_HOX2a------>ZmHOX2a(2)           ------>NtERF2<---------ZAT18      --------->ATHB12 ---->ZmHOX2a(1) <---------LBD16<----------DOF2           --------->ZAT14      --------->YAB1 =======================HOX2a_HOX2a         --------->RAP2.6(2)<---------ZAT14<---------ATHB12 =======================HOX2a_HOX2a         --------->DEAR3(1) --------->ZAT14--------->ICU4        -   cctcactcccaaagcttgatccggtatccatcagctatatcgatagccgcccaatttctctgcgctacagagtcagggcaatgatcgagatgtctaatct  22546900                                                                                         <------NtERF2                                                                                        ------>NtERF2                                                                                      --------->RAP2.3(1)                                                                                     <---------RAP2.3(1)                                                                                     <---------ATERF1(1)                                                                                    <---------DEAR3(1)                                                                                 --------->ARR14(2)                                                                                 <---------ARR14(2)                                                                               --------->LBD16                                                                              --------->ANAC55(2)                                                                              <---------ANAC58                              <---------ANAC46                                <---------ANAC55(2)                     <------NtERF2                                            <---------ANAC58             --------->ARR11(3)                                            --------->ARR14(2)      <-    --------->HSFB2a(1)  <---------ZAT2         ----------->HVH21          <---------ARR14(2)------->MYC3    --------->HSFC1(2)   --------->ZAT2 --------->GLK1(1)                 <---------GLK1(1)  <-------MYC3    <---------HSFB2a(1)  --------->At4g35610    --------->ETT(2)    --------->At4g35610--------->DEAR3(1)    <---------HSFC1(2)   <---------At4g35610    <---------ETT(2)    <---------At4g35610--------->ANAC46 -------->ANAC46  <---------LBD16       <---------GLK1(1)   --------->DEAR3(1)<---------ANAC46-------   cgacgaagcctcgaagctctcgcggctagctgtcttgaacggatttctagtcgacagagacaccgtcttcatctgcaattccgtaatcggcgccatgtgt  22547000                                                                                             --------                                                                                             ========                                                                                    ------>ZmHOX2a(2)                                                                                   <------ZmHOX2a(2)                                                                              =============HOX2a_HOX2a           <---------TOE2(1)                                                  ------>ZmHOX2a(1)   <--           <---------TOE1(1)                                                 --------->TOE1(2)    ---        <---------SPL7                                                      ----------->RAV1(2)   ---    --------->MYB52(1)<---------CCA1(2)                               --------->ANAC46     <---------YAB1 ---------ID1     ------>NtERF2        <----------DOF2                --------->ANAC58   <---------ICU4 -->ALFIN1--------->SPL7               <---------DAG2                 --------->ANAC58   --------->YAB1   agcgccaaacggtacgacgatgccatctctctgttcaattactttttcaacgagtctcagactcttccaaacacgctctcctgcgatctcatcatcaaag  22547100                                                                    --------->At4g35610                                                                    <---------At4g35610                                                                --------->ALFIN1                   <---------ETT(2)                             <---------REM1(1)                   <---------DEAR3(1)                         <---------ANAC58                   --------->DEAR3(1)                         =======================================                ===============================bZIP_DOF       <---------ANAC58                --------->O2                                  --------->TGA1a                <---------ANAC46                              <---------TGA1a            <-----------HVH21             <-----------HVH21   <---------ANAC46 -->DOF2--------------------->WRI1        <-----------TGA1   ------->TEIL =========================bZIP_DOF  ====================================bZIP_DOF       <-------TEIL -------ZAT14   <---------O2        <----------DOF2        <---------SPL7--------->LBD16 ------>ZAT18   --------->TGA1a   <---------At4g35610      ----------->HVH21   ------>ZmHOX2a(2) ------>ZAT14   <---------TGA1a   --------->At4g35610  ----------->HVH21<-----------RAV1(2)   cacactgcgaccaaggtcacgtcgacgatgctcttgagctctaccgtcacattttgctcgacggacgtgtagctccagggatcgagacatacatgatact  22547200  Previous    Next  AGI:  At3g60957.1    Description:  pseudogene of GPT Range:  from: 22544758    to: 22546531    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g60960.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G28380.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G28340.1); similar to ACT11D09.4 [Cucumis melo] (GB:AAS80150.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 22546681    to: 22549610    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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