Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      --------->TOE2(3)      <---------AHL20(2)   ----------->GT1        --------->AHL20(2) ---------ICU4          --------->TOE2(3) -------->YAB1         <---------ICU4 ------->ATHB1      --------->bZIP60(1) -------->ATHB12    <---------bZIP60(1)                                                   --------->RAP2.6(2) --------YAB1       <---------TGA2(1)                      --------->YAB1                 ------->GAMYB --------ATHB12     --------->REM1(1)                     <---------YAB1                  --------->DEAR3(1) ----->WOX13(1)   <-----------GT1                   <---------ICU4--------->MYB52(1)     --------->DEAR3(2) --CCA1(2)     <---------ZAT6                     <---------AHL20(2)                     --------->MYB46(3)   catcattgttaatagttgtgttacatcattaaatagtatttcaaaagaatataaaaatttctgataactaatggagaatgaagaatatcaaaccgcccat  22203300                --------->MYB52(1)             --------->YAB1            <---------YAB1                                                           <---------AHL20(2)           <---------AHL20(2)                                                        --------->AHL20(2)           --------->AHL20(2)                                        --------->AHL20(2)           --------->AHL20(1)                                        <---------AHL20(2)          --------->YAB1                                            <---------AHL20(2)     <---------YAB1         --------->ICU4                                        <----------DOF2      --------->AHL20(2)      --------->AHL20(2)              <-----------GT1          <---------DAG2       <---------AHL20(2)      <---------ARR11(3)       <---------DAG2            <---------ICU4             --------->AHL20(1)    --------->ANAC58           <----------DOF2          --------->ICU4              <---------AHL20(1)    --------->ANAC58        <-----------GT1 ----------->GT1 <-----------GT1 ----------->RAV1(1)  <---   tcgaccaagaaattataataacgaagtttataactttttttttcaattgtgaaatgtcatttttactttatttatttccaacaaaataaaattatgtttt  22203400                                                                                --------->YAB1                                                                                <---------ICU4                                                                              <---------YAB1                                  <---------AHL20(2)   <-------TEIL         <---------AHL20(2)                                 <---------AHL20(2)--------->ANAC58        <---------AHL20(2)                        <---------HSFC1(2)         --------->ANAC58        --------->AHL20(2)                        --------->HSFC1(2)----------->RAV1(1)         --------------->AGL15             <----------DOF2 <---------DAG2      ---------->DOF2      <----------DOF2   <---------MYB52(1) --------GT1 <---------DAG2  <----------DOF2 ------->GAMYB         ---------->ID1  <-----------GT1   atctaaacccttggactttaccaagaagctacttttttatttagcaacagcaaaagctacataccatttgttctttatttattaatgaccgtttttttag  22203500                        <---------ARR14(2)   --------->ANAC46                        ------->TEIL --------->ANAC58                        --------->GLK1(2)    --------->ANAC58                        <---------ARR11(1)   --------->ANAC58                        --------->ARR14(2) --------->MYB52(1)                        <-----------ARR10 ----------->HVH21                       <---------CCA1(2)  --------->DEAR3(1)       ------>MYB46(1)                 --------->At4g35610 --------->ANAC46    ------>MYB83                 <---------ZAT2      --------->ANAC55(2) ------>MYB46(1)                 <---------At4g35610 --------->ANAC58 --------->MYB46(3)                     <<<<<<<<              <---------At4g35610   <---------LBD16  -------->P    ------>MYB83            <------MYB83            <---------RAP2.6(2)   ----------->HVH21 --------->MYB52(1)     --------->YAB1  <------MYB46(1)            <---------ANAC46  <---------ANAC58    <---------MYB59------->GAMYB            <---------AtMYB61           --------->RAP2.6(3)<---------ANAC46    <---------MYB52(2)------->TEIL        <---------MYB52(1)         <---------MYB52(1)   <---------ANAC58  <-----------ARR10<---------MYB59      --------->MYB52(2)    <---------GLK1(2)  <---------ARR14(1)--------->DEAR3(2)--------->TOE2(3)        <---------MYB52(1)   gcattagaatcgttacggctgcttcgaatcttgcgtctcacggaccgacggaactaaccaatctcaaccgaacccgaacataacctgttcgtttggtttt  22203600                                             <---------ANAC55(2)                                             <---------ANAC46                                             <---------ANAC55(1)                                             <---------ANAC58                                          <---------ARR14(2)                                ----------->GT1                                <------MYB83 <---------ANAC58                                      --                       <-----------GT1    --------->GLK1(2)                                       <--           <------------CBF     <------MYB46(1)       <------MYB46(1)                             ---        <---------ATHB12       --------->MYB59--------->LBD16                                     <--   --------->YAB1<-------TEIL  --------->MYB46(2)     <------MYB83        ----------->HVH21       ---   ----------->GT1  <---------YAB1        --------->ARR14(2)    <-----------RAV1(1)       --------->O2 <MYB2  ------------>CBF     <---------MYB52(1)<---------MYB52(1)  ----------->GT1        <---------O2   ctaaatggtaatcaattggttcattataccggtttggtaagaagaatccgtgtgtttggtttacatatgttgtaatttgacgcttgttcatcacgttgca  22203700      *TSS<---------ARR11(3)  --------->ARR11(3)                                                   --------->ANAC58  <---------ARR11(3)                                                   --------->ANAC46 <---------CCA1(2)                                         --------->MYB52(2) ------->CCA1(2)                                         <---------MYB52(1)     <----------DOF2 -------ARR14(2)                                        <-----------HVH21 <----------DOF2      <----- ------>ARR14(2)                                  <---------GLK1(1)    --------->ANAC58 <---------CCA1(2) -------ARR11(3)        <-----------GT1           --------->HSFB2a(1)<---------ALFIN1 <---------DAG2 ------>ARR11(3)      <-----------GT1             --------->GLK1(1) <---------REM1(2) <----------DOF2   gatatatctcaacatctctcaatttttctctctacgttgaagaaactttcgaatttcccgttagttcttctccacgctttctctttccctttatctctta  22203800                                 --------->MYB46(3)                         <---------GLK1(2)                    <---------ANAC46                   --------->ATHB12       <---------ZAT14                 <---------WOX13(1)  <------ZmHOX2a(2)               --------->ATHB12--------->MYB52(1)              <---------YAB1   --------->ARR14(2)           <---------ATHB12    <---------ARR14(2)                                  --------->ANAC46          <---------ARR14(2)--------->ANAC55(2)                                 --------->ARR14(2)          --------->ARR14(2)<---------ANAC55(2)                                 <---------ARR14(2)     --------->ANAC58    --------->ARR14(2)                                  <---------ANAC46     --------->ANAC58    <---------ARR14(2) <---------ANAC46                <---------At4g35610 ----CCA1(2)--------->YAB1 <-------TEIL   --------->ZAT14                   <------NtERF2     -------   tctggttaagccaatcttgattgtttggattcgtaaccgatcagtgttgtgaggtttgaaagaatggtgttttttcgcagcgtatcagccatttcaagac  22203900                                                                            =========================                                                                            ------>ZmHOX2a(2)                                                                           <------ZmHOX2a(2)                                                                          --------->AGP1                                                                          <---------AGP1                                                                          <---------ARR14(2)        -                                                                          --------->ARR14(2)      ---                                  ------>ZmHOX2a(1)                       --------->ARR11(3)    <----                                  <----------DOF2                         <---------ARR11(3) --------                                  <---------DAG2                         <---------CCA1(2) <--------- -->ZAT6                  <----------DOF2                          <---------YAB1          ==========   tacggtctcgagcagtgagtagatttagctttcatcctttttgtgttttgtttgatgtgatacaatttgatgatcagatctaatataagaagcacaggtg  22204000      ------>ZmHOX2a(1) ============HOX2a_HOX2a                                  <---------TOE2(2) -------->MYB46(3)               <---------ALFIN1         <---------TOE1(2) -------->RAV1(1)        <---------At4g35610        <----------DOF2 ---TEIL                 --------->At4g35610  <---------------AtSPL3 ->At4g35610           <-----------RAV1(2)    <---------------AtSPL8 --RAV1(2)            <---------MYB52(1)      --------------->AtSPL8 =========RAV        <-----------HVH21 --------->At4g35610<---------TOE2(3)            <-------TEIL   caacaatcctcacttagtaactccgtcagatggctccactcttctgaattggtactttcttaggttttcatgttctcgtgatcatgcggttcagtttgag  22204100                                                                                                -----                                                                                               <-----                                                                                           --------->KAN4(2)                                                                                          --------->KAN4(1)                                                   -------->HAHB4                         <---------KAN4(1)                                                   --------->YAB1                        <------ZmHOX2a(2)                                           <---------ANAC58                             --------->ARR11(3)                                           <---------ANAC46                             <---------ARR11(3)                                      <---------REM1(1)                       --------->At4g35610                                      <-----------RAV1(1)                     <---------At4g35610                              <---------ANAC46    --------->ICU4            <-----------RAV1(2)<-----                        <---------TOE1(2)  <---------ANAC58     ================================HOX2a_HOX2a                <-----------GT1      <---------TOE2(3)          <------ZmHOX2a(1)<-------TEIL  ------   aaccaaaaatttggaattttaccttctaggttttgtgttgatgttgcttaaaatgatggtaatgcaggacttgaagtcgcagatgcaagagatcattcca  22204200  Previous    Next  AGI:  At3g60100.1    Description:  CSY5 (CITRATE SYNTHASE 5); citrate (SI)-synthase. Identical to Citrate synthase 5, mitochondrial precursor (CSY5) [Arabidopsis Thaliana] (GB:Q9M1D3); similar to ATCS (CITRATE SYNTHASE 4), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT2G44350.1); similar to ATCS (CITRATE SYNTHASE 4), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT2G44350.2); similar to Citrate synthase, mitochondrial precursor (GB:O80433); similar to mitochondrial citrate synthase precursor [Citrus junos] (GB:AAR88248.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67184.1); contains InterPro domain Citrate synthase-like, large alpha subdomain; (In Range:  from: 22203706    to: 22207423    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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