AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                             <---------ICU4
                                            <---------ATHB51
                                            <---------AHL20(2)
                                      ----------->GT1
                                  -------->HAHB4
                                  --------->ATHB12           ------->GAMYB                      ----
                 <---------GLK1(1)<---------ICU4         --------->MYB46(3)                     ----
        <---------GLK1(2)         --------->YAB1       ------>MYB46(1)                --------->ATHB12
      --------->ICU4             <---------ATHB12      ------>MYB83                  --------->ICU4
    ---------->DOF2    --------->MYB52(1)   --------->AHL20(2)                   <------ZmHOX2a(1)
----ATHB12 --------->KAN4(2)     <---------YAB1 --------->AHL20(2)            <------ZmHOX2a(1)-----
-->ANAC58 --------->KAN4(1)      --------->ICU4 <---------AHL20(2)      --------->GLK1(2)     ------
-->ANAC58<---------YAB1----------->RAV1(1)  --------->ICU4 -------->P --------->MYB46(3)  <---------AHL20(2)
->WOX13(1)<---------KAN4(1)     <---------TOE2(3) <-----------GT1   ----------->RAV1(1)  --------->AHL20(2)
 
aacttagaaaagattattcgaaatcccaacagtttaatgattagaaaataattaaaccaaacaaccctctccaacaatctaggaggaaatgatttaataa  21841100
                                                         <---------ARR14(2)
                                                      --------------->AGL15
                                                      <---------------AGL15
                                                     ----------------->AGL2
        --------------->AGL15                        <-----------------AGL2
        <---------------AGL15                        ----------------->AGL3
       <-----------------AGL2                      <-----------GT1
       ----------------->AGL2                     --------->ICU4
       ----------------->AGL3                ----------->GT1        --------->At4g35610
       <-----------------AGL3              ---------->DOF2       <---------HSFC1(2)
       ================================================================MADS_MADS
----->ANAC58                 --------->MYB52(1)--------->AHL20(2)--------->HSFC1(2)
----->ANAC58      --------->ZAT14         --------->YAB1 --------->ARR14(2)         <---------ARR11(3)
---->DAG2         <---------ZAT18   --------->ANAC58 ----------------->AGL1         --------->ARR11(3)
---->DOF2      ----------->GT1      --------->ANAC58--------->MYB52(1)  <---------AtLEC2
 
agcaactaattctatatatagtaaactcttactaaggggaagctataaaagtaattaccagatttagaagcctctgaatggatggaagatttagctatat  21841200
                   --------->O2
                   --------->ANAC55(1)
                   --------->TGA1a
                   <---------O2
                   <---------ANAC55(2)
                   --------->ANAC55(2)
                   =======================================bZIP_DOF
                   =======================================bZIP_DOF
                   --------->ANAC58
                   --------->ANAC46
                   <---------TGA1a
                   --------->ANAC58                            --------->GLK1(2)
            <---------ANAC58                         <----------ID1
            <---------ANAC58                   ---------->DOF2<---------GLK1(2)                    <
      <---------YAB1                      <----------ID1  ---------->DOF2                 <---------
      <---------AHL20(2)                ------------------------>ANAC81                  <----------
 
cagtttttttttattgcttcacacgtaacaaaaatcgagcaaggagggacaaaagaagaacaaaagattctatctccaaaaccttctcggttttatctct  21841300
                 <---------HSFB2a(2)
--------------->AGL15
<---------------AGL15
--------->HSFB2a(2)
<---------HSFB2a(2)              --------->DAG2
--------->HSFC1(1)              ---------->DOF2  --------->At5g28300                           <----
-----------------AGL2        ----------->GT1    ----------->GT1                            <--------
--GT1            --------->HSFB2a(2)          <---------ZAT14                  ---------->DOF2------
-GT1--------->CCA1(2)   --------->MYB52(1)    --------->ZAT14           ---------->DOF2    <--------
 
cttctagatagggaattgttctgaaactgagggagtaaagttgaaacagaacagtaacacagagagagagagagagaaagaagaaagagaggctaaggtt  21841400
                                                                                                   -
                                                                                              ------
                                                             <--------P                      -------
                                                          <---------TOE2(3)                 --------
                                                        <-----------GT1                     <-------
                                                       <---------YAB1                       --------
     <---------TOE1(2)                              <---------YAB1                          <-------
    <-----------RAV1(2)                             --------->ICU4                         <--------
---TEIL                                    --------->At4g35610 --------->ANAC58            ---------
-TOE2(3)                    ------------------------>ANAC81 --------->At5g28300         --------->ICU4
--->ARR14(2)     ---------->DOF2           <---------At4g35610 --------->ANAC58    *TSS--------->ARR11(3)
-TOE1(3) <-------TEIL<----------ID1 <------ZmHOX2a(1)<---------ICU4            --------->ALFIN1  <--
 
cttcttgccaggttcagacagaaagggacaagagctagaggagggaagcagagagattattacggtaagtaagcgagtgagcgagggggagataatgatt  21841500
                                           <---------ANAC46
                                           <---------ANAC58
                                           <---------ANAC58
                                          <------NtERF2
                                        --------->ALFIN1
                                       <-------PIF5
                                       -------->ABF1
                                       <-------MYC3
                                       ------->MYC2
                                       <-------MYC2
                                       ------->PIF5
                                       ------->MYC3
                                       ------->MYC4
                                       <-------MYC4
                                      <---------bZIP60(2)
    ------------>CBF                  --------->ANAC55(2)                                     <-----
    <------NtERF2                     <---------ANAC55(2)                             ------>MYB46(1)
   ------>NtERF2                      <---------TGA1a                                 ------>MYB83
  <---------PCF2                      =====================================bZIP_DOF   -------->P
 <------NtERF2                        >>>>>>>>>>HY5                                 --------->MYB46(3)
--------->MYB55(2)                    ============================================MYC_MYB  <-------GAMYB
--------->ABI4(2)                     --------->TGA1a                               <---------MYB111(1)
<---------MYB46(3)                    >>>>>>>>>>ABI5                                <---------ALFIN1
-------->ALFIN1                       <---------O2                                  --------->AtMYB61
--->ARR14(1)                          >>>>>>>>>>AtMYC2                              <---------MYB111(2)
-->ARR11(1)                           --------->O2                                  <---------MYB55(2)
>HAHB4                               ------------>OsbHLH66                         --------->MYB46(3)
--ICU4                              <---------ALFIN1                              ------>MYB46(1)
->ATHB12                         --------->At1g77200                              ------>MYB83<-----
-ATHB1                           ----------->HVH21                              --------->MYB46(3)
-YAB1                            --------->DREB2C(2)                          --------->PCF2<-------
>ICU4    --------->YAB1       <---------WRKY18(1)<-----------HVH21   ------------>MYB.PH3(2)<-------
-------ANAC46              <------ZmHOX2a(1)  <------------CBF  ---------->DOF2 <---------MYB55(2)
 
cggtgggggcaatagtactgaaactgatcaggatgaccgacacgtggcgaattgtcagacaactagttaaagagttagtgagacccaccaactcggttgg  21841600
                      ------>ZmHOX2a(2)                               ----------->RAV1(1)          <
                     <------ZmHOX2a(2)                 ------>ZmHOX2a(2)                           <
                    >>>>>>>>>GATA-3                    --------------->AtSPL3                 ------
                    --------->ARR11(3)         <---------GLK1(1)--------->ARR14(2)            <-----
                    >>>>>>>>>GATA-2          <------MYB46(1) <---------MYB59                  <-----
                    >>>>>>>>>GATA-4          <------MYB83    --------->TOE2(3)                ------
-MYB46(1)           >>>>>>>>>GATA-1  <---------HSFC1(1)--------------->AtSPL8                <------
-MYB83              <---------ARR11(3)     --------->ALFIN1  --------->TOE1(3)         <---------WRKY18(1)
-P                  --------->AGP1   --------->HSFB2a(2)     <---------DAG2  <----------DOF2 <------
--MYB52(1)         --------->GLK1(1) <---------HSFB2a(2)   ------->TEIL <---------ALFIN1     -------
 
attttgtctgtgaagttgagagagatctattgctcgatttctagaggtgggtttctgatctgtaccttatctgcaacactctttgagtcttgaccaatga  21841700
                                                                   ----------->GT1
                                                                <---------ICU4
                                                                -------->HAHB4
                                                                --------->YAB1
                                                               <---------ATHB51
                                                               <---------ATHB12
---------TOE2(3)                                               --------->ICU4
---------TOE1(3)                                             --------->YAB1
--->YAB1                --------->ANAC58                    --------------->AGL15
----ICU4                --------->ANAC58                    <---------------AGL15
---ATHB1                --------->ANAC46               <---------ARR11(3)
--->ATHB12             ------->GAMYB          <---------At4g35610  --------->YAB1
---YAB1          <---------ICU4           <-----------HVH21<-----------------AGL3
---ATHB12        --------->YAB1          <----------DOF2   ----------------->AGL3         <---------ARR11(3)
-->ICU4         <---------ATHB12 <---------YAB1        --------->ARR11(3)                 --------->ARR11(3)
 
ttaagggtgtttttgtcaaatcataacacccctcttatgcttctctttcagcgaatagtatctctaataatggtaaacaaaaaacaaattgaagttctct  21841800
                                                             --------->YAB1
                                                            <---------YAB1
                                                          --------->YAB1
        --------->HSFC1(2)                         ------->TEIL   --------->At4g35610
        <---------HSFB2a(1)                       <-----------GT1 <---------At4g35610            ---
        <---------HSFC1(2)--------->YAB1      --------->CCA1(2) --------->YAB1          <---------GLK1(2)
        --------->HSFB2a(1)                ------->TEIL<---------MYB52(1)          <-----------HVH21
 
attttctacgatgcttcgatgagtttatatcatcatctactatatgaatatatgaaccgttttataatcatctgaattcaatttcatgtcagagtctcat  21841900
                                                                            --------->WRKY38(1)
                                                                            --------->WRKY45
                                                                          --------->REM1(2)
                                                                         --------->ALFIN1
                                                                        ------->MYC2
                                                                        <-------MYC3
                                                                        <-------MYC2
                                                                        ------->MYC3
                                                                       --------->TGA1a
                                                                       <---------O2
                                                                       =========================bZIP_DOF
                                                  <-----------GT1      =============================MYC_MYB
                                          --------->ANAC46             --------->O2
                                          --------->LBD16              <---------TGA1a             <
                                         <---------LBD16               <---------ANAC46            <
                              <---------ICU4<------NtERF2              <---------ANAC55(2)        <-
               --------->GLK1(2)         --------->LBD16             <-----------GT1            ----
        ----------->GT1      --------->ICU4------>NtERF2        <---------AHL20(2)          --------
      --------->At4g35610    <---------YAB1--------->LBD16      --------->AHL20(2)   ---------->DOF2
------->DOF2   --------->ARR11(3)   <-----------GT1    --------->ANAC46--------->ANAC55(2) -------->P
 
taaaacccgagcggaaataatcttgagaagtcatcattttttcccccggcaaatttccacatcgcatttatttcacgtgttgactagttaaagctaccat  21842000
<- Previous    Next ->

AGI:  At3g59060.1   
Description:  PIL6 (PHYTOCHROME-INTERACTING FACTOR 5); DNA binding / transcription factor. similar to PIF4 (PHYTOCHROME INTERACTING FACTOR 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G43010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69966.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598)
Range:  from: 21838982    to: 21841484    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version