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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ICU4
<---------
ATHB51
<---------
AHL20(2)
----------->
GT1
-------->
HAHB4
--------->
ATHB12
------->
GAMYB
----
<---------
GLK1(1)
<---------
ICU4
--------->
MYB46(3)
----
<---------
GLK1(2)
--------->
YAB1
------>
MYB46(1)
--------->
ATHB12
--------->
ICU4
<---------
ATHB12
------>
MYB83
--------->
ICU4
---------->
DOF2
--------->
MYB52(1)
--------->
AHL20(2)
<------
ZmHOX2a(1)
----
ATHB12
--------->
KAN4(2)
<---------
YAB1
--------->
AHL20(2)
<------
ZmHOX2a(1)
-----
-->
ANAC58
--------->
KAN4(1)
--------->
ICU4
<---------
AHL20(2)
--------->
GLK1(2)
------
-->
ANAC58
<---------
YAB1
----------->
RAV1(1)
--------->
ICU4
-------->
P
--------->
MYB46(3)
<---------
AHL20(2)
->
WOX13(1)
<---------
KAN4(1)
<---------
TOE2(3)
<-----------
GT1
----------->
RAV1(1)
--------->
AHL20(2)
aacttagaaaagattattcgaaatcccaacagtttaatgattagaaaataattaaaccaaacaaccctctccaacaatctaggaggaaatgatttaataa
21841100
<---------
ARR14(2)
--------------->
AGL15
<---------------
AGL15
----------------->
AGL2
--------------->
AGL15
<-----------------
AGL2
<---------------
AGL15
----------------->
AGL3
<-----------------
AGL2
<-----------
GT1
----------------->
AGL2
--------->
ICU4
----------------->
AGL3
----------->
GT1
--------->
At4g35610
<-----------------
AGL3
---------->
DOF2
<---------
HSFC1(2)
================================================================
MADS_MADS
----->
ANAC58
--------->
MYB52(1)
--------->
AHL20(2)
--------->
HSFC1(2)
----->
ANAC58
--------->
ZAT14
--------->
YAB1
--------->
ARR14(2)
<---------
ARR11(3)
---->
DAG2
<---------
ZAT18
--------->
ANAC58
----------------->
AGL1
--------->
ARR11(3)
---->
DOF2
----------->
GT1
--------->
ANAC58
--------->
MYB52(1)
<---------
AtLEC2
agcaactaattctatatatagtaaactcttactaaggggaagctataaaagtaattac
cagatttagaagcctctgaatggatggaagatttagctatat
21841200
--------->
O2
--------->
ANAC55(1)
--------->
TGA1a
<---------
O2
<---------
ANAC55(2)
--------->
ANAC55(2)
=======================================
bZIP_DOF
=======================================
bZIP_DOF
--------->
ANAC58
--------->
ANAC46
<---------
TGA1a
--------->
ANAC58
--------->
GLK1(2)
<---------
ANAC58
<----------
ID1
<---------
ANAC58
---------->
DOF2
<---------
GLK1(2)
<
<---------
YAB1
<----------
ID1
---------->
DOF2
<---------
<---------
AHL20(2)
------------------------>
ANAC81
<----------
cagtttttttttattgcttcacacgtaacaaaaatcgagcaaggagggacaaaagaagaacaaaagattctatctccaaaaccttctcggttttatctct
21841300
<---------
HSFB2a(2)
--------------->
AGL15
<---------------
AGL15
--------->
HSFB2a(2)
<---------
HSFB2a(2)
--------->
DAG2
--------->
HSFC1(1)
---------->
DOF2
--------->
At5g28300
<----
-----------------
AGL2
----------->
GT1
----------->
GT1
<--------
--
GT1
--------->
HSFB2a(2)
<---------
ZAT14
---------->
DOF2
------
-
GT1
--------->
CCA1(2)
--------->
MYB52(1)
--------->
ZAT14
---------->
DOF2
<--------
cttctagatagggaattgttctgaaactgagggagtaaagttgaaacagaacagtaacacagagagagagagagagaaagaagaaagagaggctaaggtt
21841400
-
------
<--------
P
-------
<---------
TOE2(3)
--------
<-----------
GT1
<-------
<---------
YAB1
--------
<---------
TOE1(2)
<---------
YAB1
<-------
<-----------
RAV1(2)
--------->
ICU4
<--------
---
TEIL
--------->
At4g35610
--------->
ANAC58
---------
-
TOE2(3)
------------------------>
ANAC81
--------->
At5g28300
--------->
ICU4
--->
ARR14(2)
---------->
DOF2
<---------
At4g35610
--------->
ANAC58
*
TSS
--------->
ARR11(3)
-
TOE1(3)
<-------
TEIL
<----------
ID1
<------
ZmHOX2a(1)
<---------
ICU4
--------->
ALFIN1
<--
cttcttgccaggttcagacagaaagggacaagagctagaggagggaagcagagagattattacggtaagtaagcgagtgagcga
gggggagataatgatt
21841500
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
<------
NtERF2
--------->
ALFIN1
<-------
PIF5
-------->
ABF1
<-------
MYC3
------->
MYC2
<-------
MYC2
------->
PIF5
------->
MYC3
------->
MYC4
<-------
MYC4
<---------
bZIP60(2)
------------>
CBF
--------->
ANAC55(2)
<-----
<------
NtERF2
<---------
ANAC55(2)
------>
MYB46(1)
------>
NtERF2
<---------
TGA1a
------>
MYB83
<---------
PCF2
=====================================
bZIP_DOF
-------->
P
<------
NtERF2
>>>>>>>>>>
HY5
--------->
MYB46(3)
--------->
MYB55(2)
============================================
MYC_MYB
<-------
GAMYB
--------->
ABI4(2)
--------->
TGA1a
<---------
MYB111(1)
<---------
MYB46(3)
>>>>>>>>>>
ABI5
<---------
ALFIN1
-------->
ALFIN1
<---------
O2
--------->
AtMYB61
--->
ARR14(1)
>>>>>>>>>>
AtMYC2
<---------
MYB111(2)
-->
ARR11(1)
--------->
O2
<---------
MYB55(2)
>
HAHB4
------------>
OsbHLH66
--------->
MYB46(3)
--
ICU4
<---------
ALFIN1
------>
MYB46(1)
->
ATHB12
--------->
At1g77200
------>
MYB83
<-----
-
ATHB1
----------->
HVH21
--------->
MYB46(3)
-
YAB1
--------->
DREB2C(2)
--------->
PCF2
<-------
>
ICU4
--------->
YAB1
<---------
WRKY18(1)
<-----------
HVH21
------------>
MYB.PH3(2)
<-------
-------
ANAC46
<------
ZmHOX2a(1)
<------------
CBF
---------->
DOF2
<---------
MYB55(2)
cggtgggggcaatagtactgaaactgatcaggatgaccgacacgtggcgaattgtcagacaactagttaaagagttagtgagacccaccaactcggttgg
21841600
------>
ZmHOX2a(2)
----------->
RAV1(1)
<
<------
ZmHOX2a(2)
------>
ZmHOX2a(2)
<
>>>>>>>>>
GATA-3
--------------->
AtSPL3
------
--------->
ARR11(3)
<---------
GLK1(1)
--------->
ARR14(2)
<-----
>>>>>>>>>
GATA-2
<------
MYB46(1)
<---------
MYB59
<-----
>>>>>>>>>
GATA-4
<------
MYB83
--------->
TOE2(3)
------
-
MYB46(1)
>>>>>>>>>
GATA-1
<---------
HSFC1(1)
--------------->
AtSPL8
<------
-
MYB83
<---------
ARR11(3)
--------->
ALFIN1
--------->
TOE1(3)
<---------
WRKY18(1)
-
P
--------->
AGP1
--------->
HSFB2a(2)
<---------
DAG2
<----------
DOF2
<------
--
MYB52(1)
--------->
GLK1(1)
<---------
HSFB2a(2)
------->
TEIL
<---------
ALFIN1
-------
attttgtctgtgaagttgagagagatctattgctcgatttctagaggtgggtttctgatctgtaccttatctgcaacactctttgagtcttgaccaatga
21841700
----------->
GT1
<---------
ICU4
-------->
HAHB4
--------->
YAB1
<---------
ATHB51
<---------
ATHB12
---------
TOE2(3)
--------->
ICU4
---------
TOE1(3)
--------->
YAB1
--->
YAB1
--------->
ANAC58
--------------->
AGL15
----
ICU4
--------->
ANAC58
<---------------
AGL15
---
ATHB1
--------->
ANAC46
<---------
ARR11(3)
--->
ATHB12
------->
GAMYB
<---------
At4g35610
--------->
YAB1
---
YAB1
<---------
ICU4
<-----------
HVH21
<-----------------
AGL3
---
ATHB12
--------->
YAB1
<----------
DOF2
----------------->
AGL3
<---------
ARR11(3)
-->
ICU4
<---------
ATHB12
<---------
YAB1
--------->
ARR11(3)
--------->
ARR11(3)
ttaagggtgtttttgtcaaatcataacacccctcttatgcttctctttcagcgaatagtatctctaataatggtaaacaaaaaacaaattgaagttctct
21841800
--------->
YAB1
<---------
YAB1
--------->
YAB1
--------->
HSFC1(2)
------->
TEIL
--------->
At4g35610
<---------
HSFB2a(1)
<-----------
GT1
<---------
At4g35610
---
<---------
HSFC1(2)
--------->
YAB1
--------->
CCA1(2)
--------->
YAB1
<---------
GLK1(2)
--------->
HSFB2a(1)
------->
TEIL
<---------
MYB52(1)
<-----------
HVH21
attttctacgatgcttcgatgagtttatatcatcatctactatatgaatatatgaaccgttttataatcatctgaattcaatttcatgtcagagtctcat
21841900
--------->
WRKY38(1)
--------->
WRKY45
--------->
REM1(2)
--------->
ALFIN1
------->
MYC2
<-------
MYC3
<-------
MYC2
------->
MYC3
--------->
TGA1a
<---------
O2
=========================
bZIP_DOF
<-----------
GT1
=============================
MYC_MYB
--------->
ANAC46
--------->
O2
--------->
LBD16
<---------
TGA1a
<
<---------
LBD16
<---------
ANAC46
<
<---------
ICU4
<------
NtERF2
<---------
ANAC55(2)
<-
--------->
GLK1(2)
--------->
LBD16
<-----------
GT1
----
----------->
GT1
--------->
ICU4
------>
NtERF2
<---------
AHL20(2)
--------
--------->
At4g35610
<---------
YAB1
--------->
LBD16
--------->
AHL20(2)
---------->
DOF2
------->
DOF2
--------->
ARR11(3)
<-----------
GT1
--------->
ANAC46
--------->
ANAC55(2)
-------->
P
taaaacccgagcggaaataatcttgagaagtcatcattttttcccccggcaaatttccacatcgcatttatttcacgtgttgactagttaaagctaccat
21842000
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AGI:
At3g59060.1
Description:
PIL6 (PHYTOCHROME-INTERACTING FACTOR 5); DNA binding / transcription factor. similar to PIF4 (PHYTOCHROME INTERACTING FACTOR 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G43010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69966.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598)
Range:
from: 21838982
to: 21841484
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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