Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->AtMYB61                                                                  ------>NtERF2                                                                 --------->RAP2.6(2)                                                              --------->ANAC58                                                              --------->ANAC46                                                              --------->ANAC58                                                            ---------->DOF2                                                        --------->MYB46(3)                                        ===================HOX2a_HOX2a                                 --------->ANAC58   <------ZmHOX2a(2)                        --------                                 --------->ANAC58  --------->ARR11(3)                    --------->At4g35610         <------ZmHOX2a(1)     ---------->DOF2     <---------ARR11(3)                    <---------At4g35610 --------->GT1             <--------P   ------>ZmHOX2a(1)----------->RAV1(1)     <---------TOE1(2)   atagttaagaaggagggtctcaagcgctggtagaaaagcatcctcagggacaagatcaacaacaaagccaccaaaatcactcccaagttccagcttaacg  21807600                                                                              --------->ANAC46                                                                              --------->ANAC58                                                                              --------->ANAC58                                                                        <---------ARR11(3)                                                                      --------->ANAC46                                                                  --------->CCA1(2)                                  --------->ARR11(3)              <------ZmHOX2a(2)                                  <---------ARR11(3)             <---------ARR14(2)                           ----------->GT1                       --------->ARR14(2)                       --------->ALFIN1      <---------ZAT2      <---------ARR11(3)    ---------->DOF2                 --------->TOE2(3)--------->ARR14(2)             --------->ARR11(3)  <---------At4g35610 ->MYB52(1)      --------->TOE1(3)<---------ARR14(2)             --------->AGP1      --------->At4g35610   agtgttttgcaagtgaaaacctcaagtggtagtgaatatcgtctcccagcacatatgtctagtttaagatccaagataccacgcttcagcaaagcacata  21807700                  <---------ICU4                 --------->ICU4               <---------ICU4               --------->YAB1              <---------YAB1                                                              <---------ARR14(2)            <---------ICU4                                                      <------MYB83 --------            --------->YAB1                                                     --------->MYB46(2)           --------->ICU4                                                     <--------P  --------->ARR14(2)           <---------ATHB12                      <---------HSFB2a(2)         <---------MYB52(1)   --------->ATHB12          <------ZmHOX2a(2)   --------->HSFB2a(2)--------->ANAC46<------NtERF2  <---------YAB1 <---------YAB1               --------->GLK1(2)------>ZmHOX2a(1)<------MYB46(1)    <-   tacaacgattgaaatcatcataatgagtcggatcaaactctcttcgacattctagagagcaactccttacacgagaactggtaggcagagccaatactcc  21807800                                                                                       ----------->HVH21                                                                                ------>NtERF2                                                                               --------->DEAR3(1)                                                                             ------>NtERF2                                                                  ---------->DOF2    <----------DOF2                                                               --------->YAB1--------->LBD16                                                               ----------->GT1 <---------ALFIN1                                                           <---------YAB1   --------->ANAC46                                                         --------->YAB1  --------->GLK1(2)      <---------ARR11(3)                                 <-----------GT1 <---------ARR14(2) ->ANAC46 ------>ZmHOX2a(1)   <---------WRKY18(1)    <---------AHL20(2)  --------->ARR14(2)   ------- --------ETT(2)          <---------YAB1              --------->AHL20(2) <---------GLK1(2)    <-------   atcgacaaaatccttcaaactcccttcattcttgactgagtcatcaaactgaagttttattacaatggtaaagagattccgccacctctttgacagaatc  21807900         <---------HSFC1(2)         <---------HSFB2a(1)         --------->HSFB2a(1)                               <--------P         --------->HSFC1(2)                       ------>ZmHOX2a(2)         --------->ZAT2    ---------->DOF2      <---------ARR11(3)         --------->At4g35610           <----------ID1    <------MYB83         <---------At4g35610     <-------TEIL   --------->ARR11(3)                    <-----------HVH21   ---------->DOF2    ---------->DOF2  ----------->HVH21 <------MYB46(1) ------>ZmHOX2a(1) -->GLK1(2)          <---------RAP2.6(3)      <---------ATHB12 <---------WOX13(1) ------>ZmHOX2a(1) --GLK1(2)     <----------DOF2  --------->CCA1(2) ==============================HOX2a_HOX2a   gatgcgaaagcagcttcctttgccgaaaggaaagatacaatgtgacaaatgatctcatttggtagattgctaatcctatccatcctcttgtcaaacccta  21808000                                                                   ------>MYB46(1)                                                                   ------>MYB83                    <---------AHL20(2)                            <---------ALFIN1                   <---------MYB52(1)                  ------->GAMYB                 ----------->GT1                      <---------MYB52(2)             --------->ZAT14                          --------->MYB46(3)                   --------->DAG2             <---------ZAT14            --------->ANAC46         --------->MYB46(3)       ---------->DOF2         --------->ZAT6     <------------CBF         <---------At4g35610   --------->AHL20(2)      <----------DOF2    ------------>CBF  --------->TOE2(3)     <---------MYB55(2)     <------ZmHOX2a(1)   gaaaacccctttcactactcagttaatttcaattgagacttcaaaccacaaattcaactaacattcacccactgcaaaataatacaaacaggaaaaggag  21808100                                                                            <---------YAB1      <----                                                                           ------------>CBF    ------                                                                          <-----------GT1      <-----                               ------->GAMYB                              --------->YAB1      -------                            ----------->RAV1(1)            <---------ARR14(2)     ---------->DOF2                   --------->ANAC55(1)                     --------->ARR14(2) <------------CBF<------ ---------->DOF2   --------->ANAC46            ----------->RAV1(1)     <---------ICU4  --------->CCA1(2)   tttcaaagcggagataaacacacttaacttcaacagaaacagaattatacaacagatagagtatatgtgataagaattacaattgaaagagatgagaaat  21808200          --------->TOE1(3)          --------->TOE2(3)        -------->P        ------>MYB83                                                       ------->TEIL        ------>MYB46(1)                                                  <-------TEIL      --------->AtMYB61                                           --------->ANAC58     --------->MYB46(3)                  --------->TOE1(3)        --------->AtLEC2     <---------MYB52(2)                  --------->TOE2(3)        --------->ANAC58 -----HSFB2a(1)                    >>>>>>>>>TBF1<----------DOF2<---------ARR14(2) --->ARR11(3)                  <---------At4g35610             --------->ARR14(2) ----ARR11(3)                  --------->At4g35610            <------ZmHOX2a(1) -->GLK1(1)        <---------At4g35610 ------->TEIL      --------->HSFB2a(2)             <------ZmHOX2a(1) ---GLK1(1)        --------->At4g35610<---------ARR14(2) <---------HSFB2a(2)       ---------->DOF2   cttcgaaaccaaccttagtacagatgcgaaggcagaagaagaaccttaaactttcagttcgagaggacatgcaaatgcatctaagaaaagaggaacattg  21808300                                                                             ---------->DOF2                                                                          --------->ANAC58                                                                    XXXXXXXXXXXXXXXXXXXX>MIR851-3P                                                                    <-------MYC4                                                                    ------->MYC4                                                                    ------->MYC2                                                                    <-------MYC2                                                                    <-------PIF5                                                                    <-------MYC3                                                                    ------->MYC3                                                                    ------->PIF5                                                                   >>>>>>>>>>HY5                                                                   --------->PIF3(3)                                                                   <---------PIF3(3)                                                                   <---------TGA1a                                             --------------------->WRI1   --------->ANAC58                                          --------->ZAT18          --------->TGA1a                                   ==========================================bZIP_DOF                        --------->ATHB12  <---------ZAT18          --------->O2            <---------------AtSPL8 <----------DOF2                 <---------O2         --------->ARR14(3)      ----------------->AGL1            =====================bZIP_DOF         <---------ARR11(3)      ----------------->AG              --------->ANAC46         --------->ARR11(3)    --------->ANAC58                <-----------------PIF3(1)         <---------ARR14(3)    --------->ANAC58                <----------------PIF3(2)   aagaaaacgaaggtcttgtacaaaaaccattgcaagcctttttgggcacttgtttatatcgctgtttccacgtggcaaacaaagtcgaaccagaagaaat  21808400               <---------AHL20(2)              <---------AHL20(2)              --------->AHL20(2)              <---------AHL20(1)              --------->AHL20(1)           --------->AHL20(2)                       --------->MYB52(1)           <---------ICU4          --------->HSFB2a(2)                                <------ZmHOX2a(2)           --------->ATHB51        <---------HSFC1(1)                                <---------ARR14(2)           <--------ATHB1          --------->HSFC1(1)                                ------->TEIL           <---------AHL20(2)      <---------HSFB2a(2)<---------LBD16                --------->ARR14(2)          <---------ATHB51      <---------ARR14(2)  ------>MYB46(1)               <---------TOE2(3)          --------->ICU4        --------->ARR14(2)  ------>MYB83               <---------AHL20(2)     ----------->GT1       --------->MYB52(1)     <---------MYB59              <---------ATHB51     <------MYB83    --------->TOE2(3)            --------->AtMYB61         --------->AHL20(2)     <------MYB46(1)<---------ANAC58           <-----------GT1       --------->ARR14(2)    --------->MYB46(2)<---------MYB52(1)   ------>MYB46(1)           <---------ARR14(2)           ---    --------->MYB59 <---------ANAC58       ------>MYB83 --------->LBD16 ----------->GT1------>ZmHOX2a(2)   tttggtttggtaataatttatttcgttagtaccggttctcgaaccaaataaaccaaaccggattaaactcagaaccgataaattatggatccgattacat  21808500  Previous    Next  AGI:  At3g58980.1    Description:  F-box family protein. Identical to F-box/LRR-repeat protein At3g58980 [Arabidopsis Thaliana] (GB:P0C2G1;GB:Q9LYT8); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G58920.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 21805422    to: 21807983    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g58990.1    Description:  aconitase C-terminal domain-containing protein. similar to aconitase C-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43090.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65399.1); contains InterPro domain Aconitase/3-isopropylmalate dehydratase, swivel; (InterPro:IPR015928); contains InterPro domain Aconitase A/isopropylmalate dehydratase small subunit, swivel; (InterPro:IPR000573); contains InterPro domain Aconitase-like core; (InterPro:IPR015937); contains InterPro domain 3-isopropylmalate dehydratase, small subunit; (InterPro:IPR012305) Range:  from: 21808035    to: 21809280    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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