Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    ------>MYB83            --------->ANAC58                                  ------>MYB46(1)         --------->ANAC46 <---------AHL20(2)  ------                                <---------MYB59           --------->ANAC58--------->YAB1       ------                                --------->AtMYB61       <---------ALFIN1--------->AHL20(2)     ------   tattcaaaacttggcagaaaacttgaaaactaaaccaaaccccaaaaaaaacacagaaacacgcttcagaaacatataatattccaagtccaaaaacaag  21574600                                                                                       <---------ANAC58                                                                                       <---------ANAC46                                                                                       <---------ANAC58                                                                                    <---------MYB52(1)                                                                                <---------At5g28300                                                    --------->YAB1             <-----------GT1                                                    <---------ICU4             <<<<<<<<<GT-2                                      --------->At4g35610     --------->ICU4<---------ICU4    --------->ANAC58                  <---------At4g35610----------->GT1   --------->AHL20(2)    --------->ANAC46            ----------->GT1    --------->ICU4          <---------AHL20(2)    --------->ANAC58        --------->MYB52(1)  --------->AHL20(2)         <---------YAB1          <- --->ANAC46               <---------MYB59       <---------AHL20(1)       --------->CCA1(2)      <---- --->ANAC58              <---------ANAC55(2)    --------->AHL20(1)      --------->ARR11(3)      ----- --->ANAC58              --------->ANAC55(2)    <---------AHL20(2)      <---------ARR11(3)    <------   cctcacaagacataaaaactgaagattacttaactggtttatctgactaattaattatgttgtaataagggtaagatataattaccgtttcgttttgaga  21574700                                               --------->ANAC46   <---------ARR11(3)                                       <---------ANAC58           --------->ARR11(3)                                       <---------ANAC58          --------->YAB1       --------->LBD16                                       <---------AtLEC2         --------->ICU4       <---------HSFC1(1)                                   <---------ANAC58             <---------ATHB12     --------->HSFB2a(2)                      ----------->GT1 <-------TEIL        --------->ALFIN1           --------->HSFC1(1)      <---------GLK1(2)            <---------ANAC46     <---------ZAT2         <---------ALFIN1   --------->YAB1 --------->ZAT6 --------->MYB52(1)     <---------O2      <------ZmHOX2a(2) --------AHL20(2)<---------TOE2(3) <---------ANAC58     --------->ZAT2  <------ZmHOX2a(1) -----ARR11(3)  <-----------GT1--------->ARR11(3)       --------->O2------>ZmHOX2a(2)<---------HSFB2a(2) ---->ARR11(3)<---------WOX13(1) <---------DOF5.7(2)  <-----------RAV1(2)<---------ARR14(2)    ------ ---TOE2(3)<---------YAB1  ---------->DOF2<-----------ARR10 <------NtERF2--------->ARR14(2)   <------   ttttatcagaatgttgattaacaatagttaaaagataacgtgcatgtctactccatccaggtggcaatgatctaggatcagccacttccagaaacagcga  21574800                                                                            --------->YAB1                                                                       <-----------TGA1                                                                     --------->DEAR3(2)       --------->At4g35610                  ------>NtERF2            --------->MYB46(3)  --------->YAB1                           --------->ANAC58  --------->GLK1(1)         ----------->GT1  <---------ICU4                           --------->ANAC58  <---------GLK1(1)     ---------->DOF2 <---------ATHB12            <------ZmHOX2a(1)          ---------->DOF2<-----------HVH21    --------- ----->RAV1(1)            <-----------RAV1(2)     --------->TOE2(3)  <xxxxxxxxxxxxxxxxsmallRNA(s) ----ID1      --------->ATHB12--------->ARR14(2) --------->REM1(1)  --------->SPL7--------->AHL20(2)-   caaatgatcaccagacttattgaatccctcaggatagacaagaagacgcctacatcaaaaaagaaatccgaaccgtcatcaaaataaaagagaaaatcca  21574900                                                   --------->MYB52(1)                                             ------>NtERF2 --------->ATHB12            <----------ID1     <-----------GT1    <---------ATHB12               <---------WOX13(1)      --------->TOE1(3)     <---------ICU4  --------->RAP2.6(2)        --------->ANAC58      --------->TOE2(3)    --------->ICU4  --------->MYB46(3)          --------->ANAC58 >GLK1(2) ---------->DOF2  <---------YAB1 ------>NtERF2   --------->ICU4       --------->ATHB12 ---------->GT1          --------->YAB1   <---------At4g35610         --------->SPL7   aattgtaacattaaaagacaaggtttatcatgtttaccacttgcagccaccaataacgaattgattagaagggacgacccttgattgggaagacgagaag  21575000                                                                                                   <-                                                                                                 ----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                            ---------                                                                                          --------->AtMYB61                                                                                          --------->DEAR3(1)                                             <---------At4g35610                          <---------ALFIN1                                             --------->At4g35610                         <------NtERF2                                 --------->GLK1(1)                          <<<<<<<ZML2  --------->MYB46(3)                                 <---------GLK1(1)             <---------ANAC58         ------>NtERF2                                <---------ARR11(3)             ----------->GT1----------->RAV1(2)----                           <XXXXXXXXXXXXXXXXXXXXMIR779.2       <---------ANAC46--------->TOE1(2)-----                        <---------YAB1    ---------->DOF2      <---------ANAC58--------->TOE2(2)<----   ttttgaatcacccatgtgaacttgttatcaacgagatttcccattgaagctcaaactagtagagagcgtgaaaccctagaacctgagtggcaccaccaac  21575100                                     --------->CCA1(2)                                    --------->ARR14(2) --------ALFIN1                     <---------ARR14(2) --->GAMYB                       <---------------AGL15 -->P                            --------------->AGL15 >MYB46(1)                      <-----------------AGL3 >MYB83                         ----------------->AGL2 -->MYB55(1)                    <-----------------AGL2 --MYB55(2)                     ----------------->AGL3 --MYB111(2)                <---------ALFIN1 --MYB46(2)               --------->LBD16 --MYB111(1)              ------>NtERF2 ->MYB46(3)              --------->ANAC46 ->AtMYB61               --------->ANAC58                                                         --- ->DEAR3(1)              --------->DEAR3(1)                                                  <------ZmHOX2a(2) >MYB46(3)               <---------ALFIN1            <---------ZAT18  ------------>CBF      <-------- ----->AtMYB61           --------->ANAC58        <----------DOF2     <-----------GT1        --------- ---->MYB46(3)          <---------LBD16          <---------DAG2------------>CBF       --------->YAB1 -----MYB55(2)        --------->ANAC46        <-----------GT1------>NtERF2      ---------->ID1   ----   cacacatccaaatttgtaaactaaaccccgcctctccatatatgggtttcacttttgcacttcggcccaatttacaatttttggcccattataagatcaa  21575200                                                  --------->At4g35610        ---------->DOF2                        <---------ATHB12 ---->GAMYB                             ----------->GT1                -------->P -ARR11(3)                             --------->ZAT6         <------------CBF >ARR11(3)                         <---------MYB52(2)        --------->ATHB12                    ---- ----->MYB46(3)      <----------DOF2 --------->MYB52(1)<---------MYB111(1)      <-----------HVH21----   cgaccataagaaaagtctaaacactttgtgcatcgtgactaacagtgaaatcatctaactacttcattggctctaccagactggtcactggatgaagcca  21575300         ------>ZmHOX2a(2)        <------ZmHOX2a(2)                                                                        <---       --------->ARR14(2)                                                                    <-------       --------->AGP1                                                                        --------       --------->ARR11(3)                                                            --------->ANAC46       <---------ARR11(3)                                                            --------->ANAC55(2)       <---------ARR14(2)                                    ----------->GT1         --------->ANAC58      <---------GLK1(1)                             <---------At4g35610              --------->ANAC55(1)     ----------->ARR10                              --------->At4g35610              <---------ANAC55(2) ----->ANAC58                                   <---------REM1(1)        ---------------------->TaNAC69(1) ----->ANAC58<---------ANAC46         ------->TEIL ------->TEIL       ---------->DOF2--------->ANAC58   aggcagtgagatctgtcttgaaataaacaaaaacttgatgaacttaatagatgaagctcaaaactgaaaattgaaagcgtattatacacgtaatcagctc  21575400          --------->ARR11(3)          <---------ARR11(3)   --------->LBD16  --------->ATERF1(2)                                                                          ------  <---------DREB2C(2)                                                                          <-----  <---------ATERF1(2)                            <----------DOF2                               <-----  <---------DEAR3(1)                             <---------DAG2           <-----------GT1     <------ <---------LBD16        <-----------GT1         <---------ANAC58       <----------DOF2        ------- -------DOF2            <---------AHL20(2)      <---------ANAC58--------->ANAC58            --------- --At4g35610      <---------ANAC46      --------->DAG2          --------->ANAC58    ------>ZmHOX2a(1) ->At4g35610------>ZmHOX2a(2)         ---------->DOF2           --------->ANAC46 <---------YAB1------   tttgccggtgatgatctgtttcttatatacttgatgagccaaaaggcattgctttttcattactagacgcatgcttttacattatcctactgagtcatca  21575500  Previous    Next  AGI:  At3g58210.1    Description:  meprin and TRAF homology domain-containing protein / MATH domain-containing protein. similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58270.1); similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58270.2); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974) Range:  from: 21573419    to: 21575044    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g58220.1    Description:  similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58200.1); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains InterPro domain MATH (InterPro:IPR002083); contains InterPro domain TRAF-like (InterPro:IPR008974) Range:  from: 21575427    to: 21577459    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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