Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <---------ICU4           --------------->AGL15                                           --------->LBD16           <---------------AGL15                                          --------->ETT(1)          <-----------------AGL3                                          <---------ANAC46          ----------------->AGL2       <----------DOF2                   <---------LBD16          <-----------------AGL2      <---------YAB1        <---------AHL20(2)        <----------DOF2     --------->AHL20(2)          <---------ICU4            --------->AHL20(2)   <---------REM1(1)     <---------AHL20(2)        <-----------TGA1            <---------AHL20(2)   ----------->GT1 -------ARR11(3)             <-------TEIL                 --------->AHL20(2)<------NtERF2  <--------- ------>ARR11(3)           <---------GLK1(2)     <-----------GT1    <----------DOF2------->TEIL    <-   gatgtttttaaatctaaaaatggctattagattcgtcattacttttgtatttttccacaatttaaattgacttttgccggagatgtaacttttaaactat  21499100                                                                  --------->ANAC58                                                                  --------->ANAC58                 <-                                                            <---------ARR11(3)                    <--                                                            --------->ARR14(2)       --------->AHL20(1)                              <------ZmHOX2a(2)             <---------ARR14(2)       <---------AHL20(1)                             --------->ARR11(3)            <---------CCA1(2)         --------->ARR11(3)                             <---------ARR11(3)    <---------ANAC58     --------->YAB1         ------                      --------->YAB1               <---------ANAC58  --------->WOX13(1)        <----- --GT1  <----------DOF2  ---------->DOF2<-------TEIL       <---------GLK1(1)         <---------ARR11(3) ----------GT1    <-----------GT1     <---------GLK1(2)   ------->TEIL  --------->AHL20(2)  ---------   tttactacttctttttgtttttactcataaagatcacaaagattcactcacaagcgtatgtatatctgaagcaattaaaaatgagaaaatatttgtcctt  21499200                                                                                        ------->TEIL                                                                                        ----------->RAV1(1)                                                                                       --------->ANAC46 --------At5g28300                                                                    ------->GAMYB ---------GT1                            <---------At4g35610                         --------->ANAC58 >ZmHOX2a(1)                             --------->At4g35610     ---------->DOF2     --------->ANAC58 -----DOF2                           <-----------GT1         ---------->DOF2       <-----------GT1--- ->ID1      <-----------GT1    ----------->GT1         <---------HSFB2a(2)    <-------GAMYB ---------   ttacagtttttgtttttcttctctgttacaaaaatgtaattacatctgaaaacaatactagaaaaaagaaagtaatcgagcgttgtaacgcaccataatg  21499300                                                                   <---------AHL20(2)                                                                  --------->AHL20(2)                         ----------->GT1                      <---------YAB1                        --------------->AtSPL8           -------->HAHB4                        <---------------AtSPL8           <---------ICU4                       --------->ARR11(3)                <--------ATHB1                  <---------YAB1       --------->At4g35610  ----------->GT1                --------->YAB1         <---------At4g35610  --------->YAB1                <---------ICU4   --------->ARR11(3)      --------->ATHB51                        ----     --------->YAB1    <---------ARR11(3)               <---------AHL20(2)                      -----     ----------->GT1 <---------YAB1  <-----------RAV1(2)<---------ATHB51 ----------->GT1<---------HSFB2a(2) -------->GT1  --------->ICU4    <---------ARR11(3)     --------->AHL20(2)  --------->AHL20(2) ------ >ICU4         <---------ATHB51 <---------GLK1(2) ----------->GT1 <---------AHL20(2)    --------->HSFB2a(2)   gagaaaatagtaatacaattatgaagatagtacaaaatctcagatgaaaatatagtaaataattgtaattaaatgagataaaatcaatttctaaaaaaaa  21499400                                                                                  <----------DOF2                                                                                 <---------ANAC58                                                                          <---------YAB1                                                                        --------------->AGL15                                                                       <-----------------AGL3                                                                       ----------------->AGL2     <---------ALFIN1                              <----------ID1     ----------->RAV1(1)    --------->MYB46(3)    <---------ANAC46       ---------->DOF2     --------->AtMYB61       *TSS  <-----------GT1   <---------YAB1          ----------->GT1          <---------ALFIN1        -------- ------->GT1      ----------->GT1        --------->ALFIN1           --------->MYB46(3)       <------- ---->DAG2      <------------CBF      --------->DAG2              --------->AtMYB61       <---------- ---->DOF2 <---------ANAC46          ---------->DOF2     --------->MYB52(1)      <---------ANAC58   agtaaaaccaccttcgtgaattgtgattcggtgtttttaaaaagtggggaataaagacaaaacagagaccaccaccattaatggctttcttcaccgatac  21499500        <------ZmHOX2a(1)                ------>ZmHOX2a(1)        <---------ANAC46       --------->ANAC58               ------>ZmHOX2a(1)          ---------->ID1       --------->ANAC58              <---------ALFIN1         <---------DAG2               <---------AHL20(2)  --------->ANAC58              <---------ATERF1(1)           <----------DOF2              --------->AHL20(2)  --------->ANAC58           --------->ZAT2                  <---------DAG2               <---------ATHB12  --------->ANAC46          --------->ANAC46    <---------At4g35610                     --------->WOX13(1) ->ARR14(2)    --------->MYB46(3)  ------>ZmHOX2a(1)      <-----------GT1         --------->AHL20(2) --ARR14(2)    <---------MYB52(2) <---------ALFIN1    <---------MYB52(1)      <---------ALFIN1 -----------WRI1------->GAMYB<---------ATERF1(1)--------->At4g35610          --------->LBD16   gaacaagacaggacacaacaaactcaatcccagcctcctcctcctccgtcttctcccttattcccttttcgtttaatcccccaattttttcaattaatcc  21499600                               --------->ANAC58                    --------->LBD16                               --------->ANAC58                   <---------ANAC58                          --------->ANAC58                        <---------ANAC58                          --------->ANAC58           ----------->GT1  <--------P                        --------->LBD16             <---------HSFB2a(2)         ------>ZmHOX2a(1)--------->ANAC46          --------->HSFB2a(2)     <-----------GT1<---------ARR14(2)        ---------->DOF2     <---------ANAC46           <------- <----------DOF2    --------->ARR14(2)  --------->TOE2(3)        <---------LBD16         <----------DOF2   ctccttttctcctcttaatctgaatccgaagcaacgcataatccataacaaagtctggaaaatttcttccgggtaagagaaaacttcttctctttctttt  21499700                                                 ------>MYB46(1)                                               <---------MYB59                                               --------->TOE2(3)                                               <---------MYB46(2)                                              <---------ANAC55(2)                                              ----------------->AG                                              --------->ANAC55(2)                                         <---------ICU4                                       --------->LBD16                                             <-                                      <---------HSFB2a(2)                                    <-------                                    <------ZmHOX2a(2)                                        --------                                    --------->CCA1(2)                                        --------                                   --------->ARR14(2)                    <------MYB46(1)     <-------                                   <---------ARR14(2)       --------->AHL20(1)               ------->TEIL                                   --------->ARR11(3)       --------->AHL20(2)      ----------->HVH21                                   <---------ARR11(3)  --------->LBD16   <------MYB83  <----------ID1                        <---------HSFB2a(2) <-----------GT1 <---------AHL20(1)  <---------ANAC58   <-                       <---------LBD16--------->HSFB2a(2)   <---------AHL20(2)  <---------ANAC46  ---            <---------AHL20(2)     --------->AGP1------>MYB83  <---------YAB1   <---------ANAC58  <-- ---DOF2   <---------AHL20(2)  ---------->DOF2<-----------------AGL1   <--------P   ----------->TGA1   caatttggggttttttattttgaaatcgggaacaaaagatccagaattacctaattccgaaatttattatcgggttggattatcgtgtgacgacgaatct  21499800         <---------LBD16    <----------DOF2    <---------DAG2          <---------LBD16   <---------ANAC58   <---------AHL20(2)   <---------ANAC58   <---------YAB1      <---------AHL20(2) --------ANAC58      --------->AHL20(1)  <---------AHL20(2) ----ARR10           --------->AHL20(2)  --------->AHL20(2) ->ARR14(2)   ----------->GT1     <------MYB83                             <----------DOF2 ->GLK1(2)  --------->ALFIN1--------->HSFB2a(2)                         ------->TEIL --ARR14(2)<---------ANAC46 <---------HSFB2a(2)                        <---------CCA1(2) --------ANAC58      <---------AHL20(1)  <---------AHL20(1)        <----------DOF2 ------>STY1(2)     --------->YAB1----------->GT1             ---------->ID1 -------STY1(2)----------->GT1    <------MYB46(1)           <-----------RAV1(1)      <---------YAB1   agcttgctttttggggggggaaatataattctcggaaggtcaatttttttttttgcttcattttgttgtctttgaatcttttggtttatgaatggattgt  21499900                              --------->AHL20(1)                              <---------ARR11(3)                              --------->ARR11(3)                             --------->YAB1                          ---------->DOF2                      <----------ID1                  ---------->DOF2               <---------ARR11(3)                 <---------WRKY12               --------->ARR11(3)                                  -                 <---------WRKY38(1)           --------->YAB1                                     <--                --------->WRKY18(1)           <---------YAB1                            <---------GLK1(1)               <-----------HVH21       <---------TOE2(3)                    <---------MYB52(1) <-----   tttgaaattgtttcataggtcaaagagacaaagatattgttgagatttatgatattgggatttgtatttttgaacaccgtttctctatagatttctgctt  21500000  Previous    Next  AGI:  At3g58040.1    Description:  seven in absentia (SINA) family protein. Identical to E3 ubiquitin-protein ligase SINAT2 (SINAT2) [Arabidopsis Thaliana] (GB:Q9M2P4;GB:Q0WNH5;GB:Q1ECQ0); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT2G41980.1); similar to SINA2p [Vitis vinifera] (GB:CAB40578.1); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type (InterPro:IPR013323); contains InterPro domain TRAF-like (InterPro:IPR008974); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro d Range:  from: 21499493    to: 21502465    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version