Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      ------>ZmHOX2a(2)                                                   --------->ARR14(1)                                                   <------ZmHOX2a(2)                                                   --------->CCA1(2)                                                  <---------ARR11(3)                                                  --------->ARR11(3)                                                  <---------ARR14(3)                    --------->ATHB51                                                  <---------ARR14(2)                    -------->HAHB4                                                  --------->ARR14(2)                    <---------ICU4                                                  <---------AGP1                       <---------YAB1                                                  --------->ARR14(3)                   --------->ICU4  --------->AHL20(2)                              --------->AGP1                     <---------ICU4 ---->ANAC58                                 ==============HOX2a_HOX2a               <--------HAHB4 ---->ANAC58                                 ------>ZmHOX2a(1)                  --------->ANAC58 --->SPL7            ------->TEIL            =============HOX2a_HOX2a      --------->ANAC58 ->TEIL    <-------MYC3               <---------ANAC58         <----------DOF2  --------->ANAC58 --SPL7    ------->MYC3        --------->LBD16  ----------->ARR10    ---------->DOF2--------->ICU4 ----->AtSPL8        --------->GLK1(2)<---------ANAC58--------->At4g35610  --------->ANAC58   ccaaatttatacacatgggcatgaatctgtttccccagttccatgtcctgaagatctgctacagcctttagcaaagcagggaacgcataattatcgggtt  21269100                                                                                          <---------LBD16                                                                                      --------->AtMYB61                                                                                      <---------ALFIN1                                                                                 <<<<<<<<<GATA-3                                                                                 <<<<<<<<<GATA-4                                                                                 <<<<<<<<<GATA-1                      --------->TOE2(3)                                          <<<<<<<<<GATA-2             <---------ICU4              --------->ANAC46                      --------->WOX13(1) <--             --------->YAB1             <---------LBD16                    --------->ANAC58       <--            <---------ATHB12           --------->MYB52(1)                  <xxxxxxxxxxxxxxxxsmallRNA(s)          --------->WOX13(1)         <----------DOF2                       --------->ANAC58 ---------    --------->ANAC46 --------->ANAC46<-----------HVH21               --------->LBD16 --------->MYB46(3)  --------->ANAC46<---------WRKY12 --------->At4g35610             <---------LBD16 --------->ANAC46 <   ttatacccaaaacaatcatgtcaacgtaagtcaaaacagcttcacggagcaaattagatcgaactttggaccggagcaagtcaatccaccactccggaga  21269200                                                                            <------NtERF2                                                                          <---------ANAC58                                                                          <---------ANAC58                                                                       --------->ALFIN1                                                                       <---------DEAR3(1)                                                                     <---------ANAC58                                                                     <-----------RAV1(1)                                                                     --------->ALFIN1                                                <---------ARR11(3)   <---------ANAC46                                                --------->ARR11(3)   <---------ANAC58                                             ----------->RAV1(1)   <------MYB83                                       <---------ATERF1(1)         <------MYB46(1)                                      <---------ANAC46            --------->MYB111(2)                                      <---------DEAR3(1)          --------->MYB46(2)                                 --------->MYB52(1)               --------->MYB111(1)                                <---------ARR14(2)                <---------AtMYB61                                --------->ARR14(2)                <---------MYB46(3)                <                           ----------->RAV1(1) --------->REM1(1)  <---------DEAR3(1)                <   <---------WOX13(1)     --------->ANAC58 <------NtERF2         <---------MYB55(1)                 < --------->ATHB12         --------->ANAC58--------->ANAC58       <--------P------>NtERF2 <------ZmHOX2a(1) -------ANAC58           <---------ZAT18  --------->ANAC58     <---------MYB46(3)    --------->CCA1(2) -------ANAC58           --------->ZAT18--------->ATERF1(1)   <---------AtMYB61     --------->ARR11(3) >LBD16  ----------->GT1 <-------TEIL<---------LBD16   <-------GAMYB <---------REM1(1) <---------TOE2(3) ---------YAB1          --------->ALFIN1<------NtERF2 <---------MYB46(3)  <---------ANAC46         <-   gcgtgattgagagataaatattgaaggtgcgccagaaacggcggaggcaacatcttcggttgcagaggttggtgtggcgcgaagaagataaggatgttta  21269300                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                  <---------RVE1(1)                                                                                  <---------CCA1(1)                                                                                 <---------ARR11(3)  <------NtERF2                ----------->GT1                                   --------->ARR11(3) --------->LBD16              ----------->GT1                                    <---------AHL20(1) < ---------ANAC58             ----------->GT1                                   <---------YAB1    <--- ---------ANAC46            --------->DAG2                                     <---------TOE2(3)----- ---------ANAC58          ---------->DOF2              --------->ALFIN1----------->HVH21        ----- --------LBD16  --------->At4g35610                 --------->DAG2 <------ZmHOX2a(1)       --------->LBD16   tggcgggaaaatggaagcagttgagaaggaaaggggaaaatagacgggagagagaaggtgaaggcaagaggacatgacattaagatatttctccgaaaat  21269400        <---------ANAC58        <---------ANAC58        <---------ANAC46  <---------AHL20(2) ----->AHL20(1)                  <---------GLK1(1) ----->ARR11(3)          <---------ANAC46 ------ARR11(3)          <---------ANAC58                                      <------ZmHOX2a(1) ----------DOF2          --------->MYB52(2)                     <---------ANAC58 ------AHL20(1)          <---------ANAC58                       <---------ANAC46 ---->CCA1(1)           <-------TEIL      <-----------GT1*TSS   <---------ANAC58---------->DOF2  ---- ---->RVE1(1)   <<<<<<<<<<GATA-1 --------->GLK1(1)      --------->ZAT6     <---------ANAC46  <------ZmHOX2a(1)   atctttatttgcttatgaaatcgaggttcgtggagatttctgttaaactgtatcagtaacagtaatgcgtagacgaggcgaggaaagacgaagaaggaga  21269500                                                       <---------AHL20(2)                                                       --------->AHL20(2)                                                      --------->YAB1              --------->MYB52(1)      <---------AHL20(2)               --------->CCA1(2)                 <------NtERF2     --------->AHL20(2)               --------->ARR11(3)       ------>ZmHOX2a(1)--------->AHL20(2)  <------ZmHOX2a(1)                   <---------AHL20(2)<---------AHL20(2) ------------>CBF  ----------->GT1                <---------MYB59 ------------>CBF       --------->At4g35610 ----->CCA1(2)         <----------DOF2<---------AHL20(1)<---------YAB1 <---------DEAR3(1)   tagaggattaaatgggccataaggcctttcatgggcctaatatatgggctcatcaattttaattcctctctaggcgctgcaatataacagagtacgaatg  21269600                                                         *TSS                                                       <------NtERF2                                                      ------>NtERF2                                                     --------->ANAC58                                                     --------->ANAC46                                                     --------->ANAC58                 ----------->GT1               <------ZmHOX2a(2)                --------->DAG2                <-----------ARR10                                 -----               ---------->DOF2                <---------ARR11(3)                                <----     <---------ZAT6                           --------->ARR11(3)   --------->At4g35610       >>>>>>>>   aattctagtgagagacagaaagtgaaattcaaaaacaaaacaaaatcagatcatcgcgccattcgcagaagctcagagaaaaacttcattcggaagaaga  21269700                   ------>ZmHOX2a(1)               ------->TEIL               <---------ARR14(2)            <---------ANAC55(2)            --------->ANAC55(2)            <---------ANAC46            --------->O2                                                                        <----            <---------O2   <---------WOX13(1)                                                <-------           <------NtERF2 --------->ATHB12      <---------CCA1(2)                          ---------->DOF2 ---->ARR11(3) --------->ARR14(2)         <---------ANAC58                  --------->ZAT14 --------- -----ARR11(3)<---------CCA1(2)           <---------ANAC58       ------>ZmHOX2a(1)     --------->TOE2(3) >TBF1    ------>NtERF2 <---------YAB1 <---------MYB52(1)   <----------DOF2 <---------ZAT14 <--------   actcagtaatggcgacgtatccttctgtgattgagagaaccgttgcttcgtctcttcttctcctttcctatggaccagtgttcttctcacctaaaaggtt  21269800                                                       ------>ZmHOX2a(2)           <---------YAB1   -                                                      --------->CCA1(2)          --------->YAB1     <    --------->ANAC58                                  <------ZmHOX2a(2)         --------->ICU4     --    --------->ANAC58                                 --------->AGP1 <---------ANAC58               <-  <---------ARR14(2)                                 <---------AGP1 <---------ANAC46          -------  --------->ARR14(2)                                 --------->ARR14(2)         <---------YAB1<------ ---TEIL                                             <---------ARR11(3)       <---------ICU4  <------ --HSFB2a(1)                                         --------->ARR11(3)       --------->YAB1  <------ >DAG2                                               <---------ARR14(2)      --------->ICU4  <------- -------AtSPL8                             <---------LBD16          <---------ANAC58   --------->YAB1   cgcagaacccaatctcgtttcaatttctgtgttaattttgaggctcgcggttttagatctgtgttatcttccttgtttgattatgattatcgtattgggt  21269900                                                                                                    <                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --        --------->ETT(1)                                                                           <-     <------MYB46(1)                                                                               <-     <------MYB83                                                                              ------    --------->MYB59                                                                           <------ZmHOX2a(2) -------->ATHB12                                                                             <------- ---------ICU4                                                                               -------- ------->ICU4                                                                         ------>ZmHOX2a(2) --------YAB1          <---------ARR14(2)                                            <------ZmHOX2a(2) ---->GT1             <------ZmHOX2a(1)        <-----------HVH21                    --------->ARR14(2) ---ANAC46  --------->ARR14(2)                --------->bZIP60(1)                   <---------ARR14(2) ---ANAC58  <---------ARR14(2)                <---------bZIP60(1)                   --------->ARR11(3) ---ANAC58  --------->GLK1(2)              --------->ALFIN1              <----------DOF2--------->MYB52(1) --MYB46(3)<---------GLK1(2)           <------ZmHOX2a(1)  <---------HSFB2a(1)<-----------RAV1(1)   --   gattattaggtcggaatctgtagaggaatcgagctatgtgaggaagtggtgtcacgaaggaagttcgaacttgagcttgatgttgggatctagcggatcg  21270000  Previous    Next  AGI:  At3g57430.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41923.1); similar to hypothetical protein OsJ_012988 [Oryza sativa (japonica cultivar-group)] (GB:EAZ29505.1); similar to H0613H07.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66009.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 21266612    to: 21269457    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g57440.1    Description:  similar to unknown [Picea sitchensis] (GB:ABK21938.1) Range:  from: 21269657    to: 21271573    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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