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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
CCA1(2)
--------->
ARR11(1)
<---------
ARR14(2)
<---------
AHL20(2)
--------->
ARR11(3)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(2)
--------->
AHL20(1)
<---------
TOE2(3)
<---------
AHL20(2)
--------->
YAB1
--------->
ARR11(3)
--------->
AHL20(2)
<---------
YAB1
>>>>>
<---------
ARR11(3)
--------->
RVE1(1)
--------->
ARR14(2)
---------->
DOF2
--------->
AHL20(2)
-
MYB46(3)
---------->
DOF2
<---------
MYB52(1)
--------->
YAB1
<---------
AHL20(1)
ttatttcataaatcttttaaagatatgaaaatatcagttattaaataaaacagtatccaaaacaactaaaaataaagactataataaaatgaaatagttg
21244300
<---------
YAB1
<---------
HSFB2a(2)
<---------
TOE2(3)
--------->
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
<---------------
AGL15
<---------
AHL20(1)
===================
HOX2a_HOX2a
----------->
GT1
--------->
YAB1
------>
ZmHOX2a(1)
>>>>>>>>>>
WRKY63
<---------
AHL20(2)
--------------->
AGL15
<-----------
GT1
<-----------
GT1
--------->
AHL20(2)
<-------
--------->
TOE2(3)
<----------
DOF2
--------->
DAG2
--------->
ANAC58
--------->
ICU4
<-----------
GT1
<------
ZmHOX2a(2)
---------->
DOF2
--------->
ANAC58
<---------
ATHB51
---
>>>>>
WRKY26
<---------
YAB1
<---------
DAG2
<---------
AHL20(2)
---------->
DOF2
--------->
AHL20(2)
<--
atcaaatatttccttattatagggatcaactttatttgactatataaaaagtaacatttctgtaaagcaataaaacaataaaattatggaagattaagtt
21244400
--------->
YAB1
---------->
DOF2
--------->
YAB1
<---------
AHL20(2)
----------->
GT1
----------->
GT1
--------->
ANAC55(1)
--------->
ANAC55(2)
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
CCA1(2)
<-
--------->
ANAC58
--------->
ANAC58
--------->
ARR14(2)
--
--------->
ANAC55(1)
--------->
ANAC58
<---------
ARR14(2)
--
<---------
ANAC55(2)
<---------
MYB59
---------->
DOF2
<------
NtERF2
---
--
TOE2(3)
--------->
AHL20(2)
---------->
DOF2
<----------
ID1
--------->
DAG2
--------->
ANAC58
-
------>
HSFB2a(2)
<---------
ICU4
------------------------>
ANAC81
---------->
DOF2
--------->
ANAC58
<
-------
HSFB2a(2)
--------->
ICU4
---------->
DOF2
----------->
GT1
<---------
DEAR3(1)
<--
ttagaaacgtaataaaaagcatgatgacctaaaagcaaagccaaaaaagaaaaaccctagaagataaaaaaaaagggaggcgatacacgaaatagagaag
21244500
<---
----
-----
-----
<------
-------
---------->
DOF2
<------
<---------------
AGL15
--------
<---------
HSFB2a(2)
--------->
ANAC58
--------
--------------->
AGL15
--------->
ANAC58
<-------
--------->
HSFB2a(2)
---------->
DOF2
========
===========================================================
===========================================================
----------------->
AGL3
--------->
AtLEC2
========
----------------->
AGL2
------>
MYB83
--------
----------------->
AG
------>
MYB46(1)
<-------
============================================================
--------->
AtMYB61
============================================================
--------
ARR11(3)
============================================================
------->
AGP1
--------->
HSFB2a(1)
--------->
ANAC58
<-------
------->
ARR11(3)
<---------
YAB1
----------------->
AGL1
--------->
ANAC58
------>
NtERF2
------>
GLK1(1)
<-------
GAMYB
--------->
HSFC1(2)
--------->
ANAC46
--------->
RAP2.6(2)
-------->
CCA1(2)
----------->
GT1
<---------
HSFC1(2)
--------->
ANAC58
--------->
ANAC58
------
ZmHOX2a(2)
<---------
ANAC58
<---------
HSFB2a(1)
--------->
ANAC46
--------->
ANAC58
-------
GLK1(1)
<---------
ANAC58
---------->
DOF2
--------->
ANAC58
---------->
DOF2
agatccaaaaccaaaacaagggcgttataaatgggaagaaagttccaaaagaagaaaacagccactcacaccaagcaaagcaaattagcaaagccaccaa
21244600
<---------------
AGL15
<-----------------
AGL3
----------------->
AGL3
<------------
CBF
----------->
GT1
------
ARR14(2)
----->
ARR14(2)
->
MYB83
<-----------------
AGL2
->
MYB46(1)
--------------->
AGL15
---
MYB111(1)
-------->
AGL15
---------
AGL15
--------->
AGL2
--------->
AGL1
----------
AGL1
==========================
MADS_MADS
==========================
MADS_MADS
=========
MADS_MADS
==========================
MADS_MADS
--------->
AGL3
--------->
TOE2(3)
------>
ZmHOX2a(1)
----------
AG
<-----------
TBP
<---------
AHL20(2)
--------->
TOE2(3)
==========
MADS_MADS
--------->
AHL20(2)
<-----------
GT1
<----------
DOF2
=========
MADS_MADS
--------->
AHL20(2)
------>
ZmHOX2a(1)
<---------
DAG2
==========
MADS_MADS
<----------
DOF2
<---------
MYB59
*
TSS
----------
AGL3
--------->
YAB1
<-----------
TBP
--------->
MYB59
--------->
TOE1(3)
atatggaaaattgctacttatagtaactcccatctttttatataataccctaattttggtcctaattttccttcctt
agcccctttcccaatatttgatc
21244700
--------->
GLK1(1)
--------->
GLK1(2)
<---------
GLK1(2)
<---------
ARR11(3)
<---------
ICU4
------>
ZmHOX2a(1)
--------->
TOE2(3)
--------->
YAB1
------>
ZmHOX2a(1)
--------->
ARR11(3)
<---------
YAB1
---------->
DOF2
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
<---------
GLK1(1)
------>
ZmHOX2a(1)
aatttctaaagaaaaccccttcctctactagtcctcctcctatatatacaaaatcttaagaaatctctctacttgtttcctctgttatcataatctcttc
21244800
<---
<---------
WOX13(1)
<------
ZmHOX2a(1)
--------->
ATHB12
<---------
LBD16
<-------
TEIL
--------->
CCA1(2)
<--------
P
<---------
ARR14(2)
<---------
At5g28300
<---------
TOE2(2)
--------->
ARR14(2)
--------->
ARR11(3)
<-----------
GT1
---------->
DOF2
--------->
ARR11(3)
<---------
ARR11(3)
<-----------
GT1
--------->
ANAC46
<---------
ARR11(3)
<---------
CCA1(2)
<----------
DOF2
<-----------
GT1
<-----------
RAV1(2)
--------->
ARR11(1)
tctctatatctcttctcttcttcttttaccctgttttttttttcattccacagagcccaggttgattgattttgttattcagagat
atggggagaggaag
21244900
<----------
DOF2
--
--------->
ANAC58
--
--------->
ANAC58
--------->
ANAC58
<---------
GLK1(2)
<-----------
HVH21
--------->
ANAC58
<----------
DOF2
------->
GAMYB
<---------
DAG2
--------->
MYB52(1)
<---------
ARR11(3)
<---------
TOE2(3)
--------->
MYB46(3)
--------->
CCA1(2)
--------->
ARR11(3)
---
ZmHOX2a(1)
<---------
TOE2(3)
--------->
O2
<----------
ID1
---------->
DOF2
<--
gattgagattaagaagattgagaatatcaacagtcgtcaagtcactttctctaagagacgaaacggtttgatcaagaaggctaaagagctttcgattctc
21245000
--------->
CCA1(2)
--------->
ARR11(3)
<---------
ARR11(3)
<--------
P
<---------
ATERF1(2)
------>
NtERF2
--------->
ATERF1(2)
--------->
DEAR3(1)
<-------
PIF5
<------
NtERF2
------->
PIF5
<---------
YAB1
------>
NtERF2
--------->
DEAR3(1)
<---
<---------
bZIP60(1)
--------->
DREB2C(2)
<-------
<---------
ANAC46
<---------
ALFIN1
--------->
ICU4
--------->
HVH21
--------->
ZAT2
<---------
TOE2(3)
--------->
YAB1
<-------
--------->
TGA1
<---------
ZAT2
<-----------
GT1
<---------
YAB1
<--------
---------
HVH21
--------->
YAB1
<---------
LBD16
----------->
GT1
<---------
YAB1
tgtgacgccgaggttgctcttatcatcttctccagcaccggcaagatttacgatttctccagcgtctg
gtatattagttatcatctcatgattttgcttc
21245100
-----
<----------
DOF2
<--------
<---------
ANAC58
---------
<---------
ANAC58
<---------
ARR11(3)
-------
DOF2
<---------
YAB1
<---------
CCA1(2)
--
ANAC58
---------->
DOF2
<<<<<<<<<
GATA-1
--
ANAC58
<---------
LBD16
--------->
AHL20(2)
--------->
AHL20(2)
--------->
MYB46(3)
------>
ZmHOX2a(1)
----------------
ANAC81
<---------
AHL20(2)
---------->
DOF2
-------->
P
<-----------
GT1
tttttttttgctttggggaaataaaaagttttgcatttttatgggtttttgtgtctaaagtaaatgaaaacagagcaacccctgtttatctatatcctaa
21245200
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AGI:
At3g57390.1
Description:
AGL18 (AGAMOUS-LIKE 18); transcription factor. similar to AGL15 (AGAMOUS-LIKE 15), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G13790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23610.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)
Range:
from: 21244678
to: 21246888
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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