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UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                            <---------------------WRI1
                                            --------->WRKY18(1)
                                           <-----------HVH21
                                       <---------ANAC58
           --------->ZAT2              <---------ANAC58
          ------->TEIL                 <---------ANAC46
         <---------ALFIN1           --------->ALFIN1
        --------->LBD16           --------->ALFIN1
       --------->ANAC58         <---------ANAC58
       --------->ANAC46         <---------ANAC58
       --------->ANAC58         <---------ANAC46
      <---------LBD16        --------->ANAC58                                                  -----
 <----------DOF2         <-----------GT1   <--------ZAP1      --------->GLK1(1)               <-----
-------->AtSPL3--------->ZAT2--------->ANAC46              <---------TOE2(3)    --------->WRKY18(1)
-------->AtSPL8<---------ZAT2--------->ANAC58<---------WRKY38(1)         <----------DOF2  <---------ALFIN1
 
tactctttacccgcaccttgctgcgatttcacaagccgtgtggctcggtcaatacagacaatgaggtttccagtgacttttgggtcaagagtaccactgt  21166600
                    --------->ARR14(1)      --------->O2
                    --------->CCA1(2)  ------->GAMYB
                   <---------ARR14(2) --------->DEAR3(1)
                   --------->ARR14(2) <---------MYB52(2)
                  <------ZmHOX2a(1) --------->MYB52(1)            <----------DOF2        --------->SPL7
             --------->ANAC58     --------->MYB46(3)           <---------TOE2(2)         ------->TEIL
             --------->ANAC58    --------->ANAC58              <---------TOE1(2)       <---------SPL7
          <---------REM1(2)      --------->ANAC58              --------->LBD16       ---------------
 <---------MYB52(1)--------->ARR11(1) --------->MYB46(3)      <---------ANAC46  <xxxxxxxxxxxxxxxxxxx
------>HVH21 --------->ANAC46    --------->ANAC46            <---------LBD16    ----------->HVH21
------HVH21 <---------LBD16      --------->AtLEC2          <-------TEIL     <---------WOX13(1)
 
gaccggttttctcaacacggaggatacgcttaatccaagcaacgacctcgtgagaagaagggttcgcgggtttatcgagattgatgacaccgtacctgat  21166700
                                               --------->ZAT14
                                               --------->ZAT18
                                               <---------ZAT14
                                              --------->ALFIN1
                                            <---------ANAC58
                                            <---------ANAC46
                                     <---------YAB1
                                    <------NtERF2
                                   --------->At4g35610
                                   <---------At4g35610         ------->TEIL
                                   ------>NtERF2            --------->ANAC58
                                  <---------DEAR3(1)       --------->SPL1(2)
                                 --------->RAP2.3(1)     <---------SPL7
                               <---------DEAR3(1)        <---------MYB52(1)
                              --------->DEAR3(2)       <---------------AtSPL3
                      <------ZmHOX2a(1) <---------WOX13(1) --------->SPL7 <-------GAMYB  <------ZmHOX2a(1)
                   <---------At4g35610--------->ATHB12<---------ANAC46  <---------DEAR3(1)      <---
>AtSPL8   <------ZmHOX2a(1)----------->HVH21<---------ANAC58--------->ANAC58     --------->ARR11(3)
xsmallRNA(fl3) <-----------HVH21<---------ATERF1(1)----------->HVH21    <---------RAP2.6(2) <------ZmHOX2a(1)
 
atactcttgaagaggacgtttcagaggagagtgaccggcgctgattggagtgtagtgaccggtacggacgttgaggcggtcgtagttcttgaggaggatg  21166800
                                                                 <------NtERF2
                                                                 --------->ATERF1(1)
                                                                ------>NtERF2
                                                                --------->RAP2.6(2)
                                                                <---------ATERF1(1)
                                                                <---------RAP2.3(1)
                                                               <---------DEAR3(1)
                                                               <---------ATERF1(2)
                                                               --------->ATERF1(2)
                                                              --------->ATERF1(1)
                                                              <------NtERF2
                                                              <---------LBD16
                                                              <---------At4g35610
                                                              --------->At4g35610
                                                             <---------DEAR3(2)
                                                             <---------ERF1
                                                             <---------ATERF1(1)
                                                             <---------RAP2.3(1)
                                                             <---------ORA47(2)
                                                             <---------RRTF1(1)
                                                            <---------RRTF1(2)
                                                            <---------RAP2.3(3)
                                                            <---------DEAR3(1)
                                                            --------->ETT(1)
                                                            <---------RRTF1(3)
                                                            <---------RAP2.6(2)
                                                            <---------ANAC46
                                                            <---------DEAR4(1)
                                                            <---------DREB2C(2)
                                                            <---------RAP2.3(2)
                                                            <---------At1g77200
                      <---------ANAC46                     --------->DDF1
                  <---------ANAC58                         --------->ATERF1(1)
                  <---------ANAC58                         <------NtERF2                     <<<<<<<
                  <---------ANAC46                        <-----------HVH21             <---------ANAC58
                <---------MYB46(3)   <---------ANAC58    --------->ALFIN1               <---------ANAC58
         --------->ALFIN1            <---------ANAC58    ----------->HVH21          <---------ANAC58
        <---------HSFC1(2)           <---------ANAC46  --------->LBD16        <---------MYB52(1)<<<<
------PCF5  --------->ETT(2)    <-----------RAV1(1)  <---------LBD16<------NtERF2   <---------ANAC58
 
ggccactgagaagtgtcgatggctggagtgaaactctgtggcttgatcatgtagtctccggtgtcggcggcatcgttctccgttttgtcttgcttcttct  21166900
                      ------>NtERF2
                      --------->LBD16
                     --------->ANAC46
                     --------->ANAC58                                                    --------->DAG2
                     --------->ANAC58                                    ---------->DOF2---------->DOF2
                   <---------ATERF1(1)                              <---------ANAC46   *TSS   <-----
              --------->ETT(2)                                      ----------->GT1 --------->LBD16
              <---------ETT(2)    <-----------HVH21                <------NtERF2  --------->At4g35610
             --------->DDF1       <---------MYB52(1)             <---------DEAR3(1)<---------ANAC46
    <---------ZAT6--------->AtMYB61        <---------TOE2(3)    --------->ATERF1(1)----------->GT1
    --------->ALFIN1 --------->DEAR3(1)    <---------TOE1(3)  --------->ALFIN1    <---------LBD16
<<TBF1   --------->At4g35610   <------NtERF2                 <------ZmHOX2a(1)<---------REM1(1)
<<<<<TBF1<---------At4g35610   <---------LBD16   ----------->GT1<------ZmHOX2a(1) <---------At4g35610
 
tcttcgagtgtgagatgtcgacctccgccatggctccggtcggattagggttttgaaaaatggaggaggaggcgttaaaagttgtagcggaaaaagagga  21167000
                                                                                                   <
                                                        <<<<<<<<<<<<<<<<<LFY                       <
                 ---------->DOF2                       <---------bZIP60(1)                         <
             --------->AHL20(2)                        --------->bZIP60(1)                        --
       <------MYB83                             <------NtERF2                       <------------CBF
       ----------->GT1                         ------>NtERF2                       --------->ATHB12<
       <------MYB46(1)                         ----------->RAV1(1)                <---------MYB52(1)
     <---------WOX13(1)             <---------TOE2(3)  ----------->HVH21        ----------------->AGL1
    <------------CBF      <---------TOE2(3)   --------->ETT(2)                  ----------------->AG
   --------->ATHB12  <------ZmHOX2a(1)        ----------->HVH21         <---------TOE2(3) <---------ANAC58
-ZmHOX2a(1)  <---------AHL20(2)     <---------TOE1(3)--------->YAB1     <---------TOE1(3) <---------ANAC58
 
gacgactgattggtaatttataaaggactagggttttttagggttttaggcgacagtgatgacactggaagcttgaaggtaatcccttattgggcttgag  21167100
             <---------AHL20(2)                                                       --------->AHL20(2)
            --------->AHL20(2)                                                        <---------AHL20(2)
     <----------DOF2                                                                <----------DOF2
------MYB46(1)--------->ATHB12                  <---------ZAT18                    --------->TOE2(3)
---------ANAC58                                 --------->ZAT18           --------->ANAC46
------MYB83 <---------AHL20(2)               <---------ANAC58        --------->ARR14(2)
------->MYB59<---------YAB1<-----------GT1   <---------ANAC58        <---------ARR14(2)        <----
---------ANAC58       <----------DOF2     <---------MYB52(1)     <-------TEIL      --------->TOE1(3)
 
ttgggtttctttgattttaattgggcttttatacaagttcaattcgtttagtgcccaaataaacgaggtccatatacccgataaaacctttaattggact  21167200
                                    <---------ANAC46                                        <-------
                                    ----------->GT1          --------->YAB1            <-----------GT1
                                  <---------ZAT14         <----------DOF2           --------->YAB1
                          <---------YAB1               <---------ARR11(3)       --------->AHL20(2)<-
                        --------->YAB1                 --------->ARR11(3)     ----------->GT1   <---
------DOF2             <---------YAB1              ---------->DOF2          ---------->DOF2 <-------
 
ttcatacaagttcaattcgtttgaatattatcattcgtgaagtgaataccagtttaaagacctttcatagttcaaacttcaaagtaaatataaccctttt  21167300
                                                                                   <---------AHL20(2)
                                                  <----------DOF2                  --------->AHL20(2)
 ----------->GT1     <-----------RAV1(1)       <---------ARR11(3)                 XXXXXXXXXXXXXXXXXX
--DAG2    <---------TOE2(3)<---------ZAT18     --------->ARR11(3)           ----------->GT1     <---
--------ANAC46    <----------DOF2           --------->DAG2--------->ANAC55(2)--------->YAB1     <---
------ANAC46<---------GLK1(2)         ----------->GT1   --------->CCA1(2)   <---------YAB1<---------ANAC46
---DOF2   <---------TOE1(3)--------->ZAT18 ---------->DOF2<---------ANAC55(2)--------->TOE2(3)  ----
 
tgtgtagataattaaggttctcttttgttgtgcccaaaatgtagaaaaaagctcttttgatacgagacaattgaatgttatgttaataaaactgcttata  21167400
                                                               <---------YAB1
                                                              <---------AHL20(1)
                                                              --------->AHL20(2)
                                                          <---------ICU4
                                                          <---------AHL20(2)
                                                          <--------HAHB4
                                                          --------->YAB1
                                                          -------->ATHB1
                                                          -------->HAHB4
                                                          --------->ATHB51
                                                         <---------ATHB51
                                                         --------->ICU4
                                                       --------->YAB1
                                                       <---------ICU4
                                                      --------->ICU4
            <---------WOX13(1)                   <---------O2 <---------AHL20(2)
         <---------YAB1                     --------->ANAC58  --------->AHL20(1)
--------->YAB1              ------>MYB46(1) --------->ANAC58 --------->YAB1
XX>MIR844--------->ICU4<-----------GT1 --------->YAB1 <---------YAB1
------AHL20(2)<------MYB83  ------>MYB83  --------->MYB52(1)<---------YAB1
------YAB1--------->ATHB12<---------MYB59 <-----------GT1<---------YAB1
----->AHL20(2)<------MYB46(1) <---------ATHB12   --------->O2--------->AHL20(2)      <----------DOF2
 
taattagaagtattgattggtcatataaacctaatgaagcatgaataacgcctcgtgataattattatattaagagtcgaacgtctgtctttttcagtaa  21167500
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AGI:  At3g57150.1   
Description:  NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57). Identical to H/ACA ribonucleoprotein complex subunit 4 (NAP57) [Arabidopsis Thaliana] (GB:Q9LD90;GB:Q42348;GB:Q94AA2); similar to pseudouridylate synthase TruB family protein [Arabidopsis thaliana] (TAIR:AT5G14460.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ56073.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ56048.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15636.1); contains InterPro domain Uncharacterized domain 2 (InterPro:IPR004521); contains InterPro domain DKCLD (InterPro:IPR012960); contains InterPro do
Range:  from: 21164952    to: 21166988    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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