Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <------ZmHOX2a(2)                                                                                   <---------ARR11(3)                                                                        <------ZmHOX2a(2)                                                                       <---------ARR11(3)                                                                       <-----------ARR10<---------MYB52(1)                                                                       --------->ARR11(3)                                                                       <---------ARR14(3)                                                         <---------ANAC55(2)       --------->ARR11(3)                                                         --------->ANAC55(1)   --------->LBD16                                                         --------->ANAC55(2)  --------->ANAC46                          <----------DOF2                --------->ANAC46    <---------LBD16                      <---------ALFIN1                   --------->ANAC58  <---------REM1(2)             <---------ZAT2                  --------->ICU4            --------->ARR14(3)  ==========             --------->ZAT2                  <---------YAB1            --------->ARR14(2)  <-------GAMYB             <---------At4g35610           --------->MYB52(1)          <---------ARR14(2) <---------MYB46(3)            --------->ARR14(2)<---------ANAC58<---------MYB46(3)     <------NtERF2--------->GLK1(1)            <---------ARR14(2)<---------ANAC58--------->ATHB12     <---------LBD16<---------GLK1(1) ----ARR11(3)--------->At4g35610  <---------ZAT6         --------->ANAC58------>ZmHOX2a(2)--------->MYB52(2)   ctaagagactcgcagagctgggaaacacctttgctagtggtgaagtaatggttgagaagacggaacaagtcgggatcttcacggagatcagtttgttgaa  21145100                                                                      <---------YAB1--------->ZAT2                  <---------TGA1a                          <---------TOE2(3)        <---------At4g35610                  <---------O2                             <---------YAB1 ------>ZmHOX2a(2)                  --------->O2               --------->ANAC58   --------->ARR11(3)  --------->At4g35610                  --------->TGA1a            --------->ANAC46   <---------ARR11(3) <---------TOE1(2)           <---------ZAT14        <-----------GT1          <---------TOE1(3)<---------YAB1      <---- ===========================MYC_MYB          --------->ANAC58<---------GLK1(2)  ------>ZmHOX2a(2)   actcgatgaagagtttagagacgtcttcgtccatattatccatacactcgccaagtttgttaagattatcttctgatcgtgatcgcagcatcccattact  21145200                                 =====================================HOX2a_HOX2a                           <---------YAB1                        ----------->HVH21                        ----------->TGA1                      <------MYB83                      --------->At4g35610                      <------MYB46(1)                                   ----------->RAV1(2)                      <---------At4g35610                      ------>ZmHOX2a(2)                     --------->MYB46(2)                       <------ZmHOX2a(2)                     --------->MYB111(2)                     --------->ARR14(2)                     --------->MYB111(1)                    <---------GLK1(1)                     --------->MYB55(2)              --------->ICU4   --------->ANAC58            ---                     <---------MYB46(3)              <---------ATHB12 --------->ANAC46         <-----                    <--------P   <------ZmHOX2a(1) --------->GLK1(1)  --------->ANAC58     ---------- <---------ANAC46   <---------MYB55(1)    <-----------RAV1(1)<---------ARR14(2)          --------->ANAC58 -------RAV1(1)  --------->ALFIN1====================================HOX2a_HOX2a         --------->ANAC58   gtggccgatggaagacgaagtggtaggtgacgataggagaaacattgttggagaaatcatggagatcggtttacgcctgagaatgagtctcaagaaagga  21145300                                                  <----------DOF2                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                        <---------ZAT14                                       <------ZmHOX2a(2)                         <----------DOF2                               ---------->DOF2 <---------ARR11(3)               ------>ZmHOX2a(2) -------->GT1             ----------->GT1      --------->ARR11(3)              <------ZmHOX2a(2) -ZmHOX2a(1)      --------->MYB52(2)  --------->ARR11(3)                      <---------ARR11(3) >DOF2          <---------MYB52(1)    <---------ARR11(3)  <---------ZAT14     --------->ARR11(3)   ttgcaaaatttcatcgtcgttttttgcagagtaaaaagaagatcaatacgatctttagagaacagagtaaacaaaaatacgatctttagagaacagagta  21145400                                   <---------YAB1                                 <--------HAHB4                                 <---------ICU4                                 -------->ATHB1                                               <------                                 --------->YAB1                      --------->YAB1           -------                                --------->ICU4               *TSS --------->YAB1             --------                    <---------At4g35610                     ----------->GT1            <-----------GT1                    --------->At4g35610              --------->ZAT2--------->AHL20(2)--------->HSFB2a(1)              <---------YAB1   --------->GLK1(2)     <---------ZAT2<---------AHL20(2)<---------HSFC1(2)            --------->YAB1    --------->YAB1         --------->At4g35610             <---------HSFB2a(1)      <-----------GT1      --------->YAB1            <---------At4g35610             --------->HSFC1(2)   agagagtttcacaattttgatcagatgaataagaatcattatagaaaaattagtcagcagtcgggttatattaataaacttgtaagaaatttccatttat  21145500                                                     <----------DOF2                                          <----------DOF2     <---------At4g35610 ---AHL20(2)                 --------->ANAC58     <-----------GT1          <---------LBD16       ---- -->AHL20(2)   <----------DOF2        <-----------GT1<---------DAG2   <-----------GT1  --------->ARR11(3) ->AHL20(2)<-----------GT1   --------->ANAC58 <-----------GT1 --------->At4g35610  ---------->DOF2  -   ttgcgaagaagtatttccttttttttttgccaagtcaaaatttccttttttcttacttttctacagctgtataaaccctcggaaaaaaagaaattgatgc  21145600                                                                  --------->ATHB51                                                                  <---------ICU4                                                                  <--------ATHB1                                                                  --------->YAB1                                                                  -------->HAHB4                                                                  <--------HAHB4                                                                 <---------YAB1                                                                 --------->AHL20(2)                                                              <---------AHL20(2)                                                              --------->AHL20(2)                                                             <---------AHL20(2)                                                     ------>MYB83--------->ICU4             ---------                                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ---------->DOF2                                                  --------->MYB46(3)             --------->TOE1(3)                                                <-----------GT1--------->YAB1 --------->MYB52(1)             --------->AHL20(2)           <---------ZAT6     --------->AHL20(2)  --------->TOE2(3)     --------->ICU4                     <------MYB46(1)      --------->AHL20(1)-------->P  --------->ARR11(1) <-----------HVH21      --------->YAB1  <------MYB83 ------>MYB46(1)        <---------MYB52(2) ----->MYB52(1)    <---------YAB1    >>>>>>>>>CBP60g----------->RAV1(1)<---------TOE2(3)   <---------ARR11(3) ------>GAMYB--------->ICU4          >>>>>>>>>SARD1------->GAMYB <---------ATHB51<---------MYB59    -   aacggtcatattgaaatatttatgaataaaaattgagaaatttggtgttataaccaacaaaaatttaataattaagaaactaacctaaaaaaagatttga  21145700                                              <---------------AtSPL3                          <-----------GT1     --------------->AtSPL8                      <---------AHL20(2)     <------------CBF                      --------->AHL20(2)   <---------YAB1                     --------->YAB1       <-----------GT1           <---------AHL20(2)         <----------DOF2          <---------AHL20(1)          ----------------------->TaNAC69(2)                            <          <---------ARR11(3)       <-----------GT1                       <---------At4g35610        - >CCA1(2) --------->AHL20(1)      <-----------GT1 ------->TEIL <---------ZAT14                   ---- -------->YAB1 <-----------GT1   <---------AHL20(2)--------->ANAC46      <---------CCA1(2)   <-------   tatcatattctatatattttctatattaataccattttatcttttttcattgtacgtctcttgtctgaacagttcatctctctcgcctctcacttctttg  21145800                                                                                          --------->LBD16                                                                                        <------NtERF2                                                                                    <---------DEAR3(2)                    <---------YAB1                                                  <---------ATERF1(1)                 <---------AHL20(2)                                                 <---------MYB46(3)                 <---------AHL20(1)                                               <---------MYB52(1)                 --------->AHL20(2)                                              <-------MYC3            <---------YAB1                                                       ------->MYC3          <-----------GT1                                                       <---------TGA1a      --------->AHL20(2)                                                        <---------O2      <---------AHL20(2)                                        ---------->DOF2 --------->O2 ----------DOF2 --------->AHL20(2)                         --------->AtLEC2     --------->TGA1a ----->ZmHOX2a(1)--------->AHL20(1)                        ----------->GT1    <---------ALFIN1 ------>ID1------------>CBF                        <---------AtLEC2         --------->AtMYB61 ------- ---DOF2  --------->YAB1     --------->ICU4  <---------AHL20(2) ==========================bZIP_DOF   tcctttttttaattacaattttatttttgtaattactctggtttgaattttttgcatagacatgaaaaaagaagaagaccacacgttggctccgaataaa  21145900                                   <---------ANAC58                             ------>NtERF2                             --------->LBD16                             --------->LBD16                         <---------LBD16                           <---------LBD16    --------->AtMYB61    --------->ARR14(2)                         --------->AtMYB61    <---------ALFIN1     <---------ARR14(2)                     <---------WRKY12      --------->DEAR3(1) <------NtERF2                 --------->LBD16   <---------ANAC46           --------->At4g35610         <-----------GT1 ------->GAMYB     --------->AtMYB61  <---------At4g35610       <-----------HVH21--------->MYB46(3) <---------ALFIN1 --------->ZAT18                     -----     <------NtERF2   <---------WRKY38(1)  --------->MYB46(3)<---------ZAT18              --------->ANAC58 -->AHL20(2)--------->MYB46(3)     <---------ANAC58    ---------->DOF2<---------LBD16    --------->ANAC58   acatggccgagtcaccctccgagtcaacctccgcgttgcttagcaccaccacatccactaagcccgctcaatccgggactgtttctatttcaagccctca  21146000  Previous    Next  AGI:  At3g57100.1    Description:  Identical to UPF0496 protein At3g57100 [Arabidopsis Thaliana] (GB:Q9M1J0); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G34320.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22906.1); contains InterPro domain Protein of unknown function DUF677 (InterPro:IPR007749) Range:  from: 21143992    to: 21145461    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g57110.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60370.1) Range:  from: 21145903    to: 21146313    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version