Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------ARR14(2)                            --------->ARR14(2)                    --------->LBD16                   <---------LBD16                                                         ----------                  <---------LBD16                                                ------->GAMYB  -----             <---------ARR11(3)                                                 <---------MYB52(2)             --------->ARR11(3)         <---------CCA1(2)                       <---------MYB55(2) <---------------AGL15   --------->ANAC58                                       <---------MYB46(2) --------------->AGL15   --------->ANAC58                                       <---------MYB111(2) ------>GLK1(2) --------->GLK1(2)    ------>ZmHOX2a(1)                          --------->MYB46(3)--- ----YAB1   ----------------------->TaNAC69(2)                     <-----------GT1-------->P -------- ---TOE1(2)----------->ARR10<-----------ARR10                    <----------DOF2<---------MYB111(1) <   attctagattgagaagataatccgggcacggttctactcctcatacctctgaacatatgcttcaagtctttactacttgccaactaccaaaaaaaaagat  20931900                                                            ========================HOX2a_HOX2a                                                           =========================HOX2a_HOX2a                                                           --------->CCA1(2)                                              ====================HOX2a_HOX2a                                   ------->TEIL            <------ZmHOX2a(2)     --------->ANAC58   --------->LBD16       <------ZmHOX2a(1)     --------->ANAC58  --------->HSFB2a(2)    =====================HOX2a_HOX2a  XXXXXXXXXXXXXXXXXXXX>MIR852      --------->GLK1(2)      <---------ARR11(3) >DOF2                 <---------HSFB2a(2)   ----------->GT1------>ZmHOX2a(2) ---->CCA1(2)       <---------ARR14(2)  ----------->HVH21 <---------AGP1 ------->DOF2       --------->ARR14(2) <-----------HVH21  --------->ARR11(3) --->GT1      --------->At4g35610 --------->ARR14(2)      --------->AGP1                        ----- ----------ID1<---------At4g35610 <---------ARR14(2)  ---------->DOF2        <------ZmHOX2a(1)  -----   aaaagacaagcacttcagctcaaatccagaactcaagaacctgtaacaggaaaaatcaaagatctaagagagagagagaggaagaagatgagaagtcacc  20932000                                                                                                 <<<<                                                <------MYB83                          --------->At4g35610                                                <---------MYB46(3)                  ------>ZmHOX2a(2)                                                <------MYB46(1)                    <------ZmHOX2a(2)                                                ----------->GT1                    --------->GLK1(1)                                             <------ZmHOX2a(1)                     <---------At4g35610                                      <---------ARR14(2)                          --------->ARR14(2)                                      --------->GLK1(2)                           <---------ARR14(2)                          ----------->HVH21<---------TOE2(3)                      --------->ARR11(3) ---->TOE1(3)    <------ZmHOX2a(1)    --------->ARR14(2)      <---------ANAC58    <---------ARR11(3)< ---->TOE2(3)  --------->ALFIN1      <---------GLK1(2)        <---------ANAC58   <-------------------   ttagaacggataatggagaggagcctaggtgaaggtgaagaatctgaggatggttcaaaagttttcttggtagaagaagactgggatctgctctgtttct  20932100                                                                                               ------                                                                                               ------                  --------->ATHB12                                                             ------                  <---------MYB46(3)                                                       --------->ANAC46                 <---------YAB1                                                            --------->ANAC58               <------MYB83                     ---------->ID1                        <----------DOF2               <------MYB46(1)              <----------DOF2   --------->LBD16        ================       --------->YAB1        --------->ZAT6------>ZmHOX2a(2) --------->HSFB2a(2)     ================       <---------ICU4    <---------MYB59 --------->ARR11(3)  <---------HSFB2a(2)     ================      <---------YAB1<---------WOX13(1)   <---------ARR11(3) <---------LBD16          ------>ZmHOX2a(2) <<<<<TBF1    <---------AtMYB61         --------->YAB1   <----------DOF2           <---------ARR11(3) <<<<<<<<TBF1 --------->MYB46(2)   <---------YAB1 <----------DOF2                  --------->ARR11(3) -----ANAC81  <---------MYB46(3) --------->At4g35610  <-----------GT1    <----------DOF2   --------->ANAC58   tcttcttcatcatggtttggtgattgacttaactctgatgaatgatctttttcttttttctttctgggaataaaactttgttgatgatctttcaagcaag  20932200                       <---------AHL20(2)                  --------->AHL20(2)                  <---------YAB1                  <---------AHL20(2)               <---------ARR11(3)               --------->AHL20(2)               <---------AHL20(1)               --------->ARR11(3)               --------->AHL20(1)          ================================HOX2a_HOX2a          <------ZmHOX2a(1)       <------ZmHOX2a(1)       ===================================HOX2a_HOX2a      <---------WRKY12    <------ZmHOX2a(1)<---------YAB1                        <---------WRKY38(1) --->ANAC58   --------->CCA1(2)                 --------->ICU4 --->ANAC58  <---------ARR11(3)    <------ZmHOX2a(2)      --------->WRKY18(1)   ------->GAMYB --->ANAC46  --------->ARR11(3)   <---------ARR14(2) <---------ICU4          <-----------GT1 ================HOX2a_HOX2a     --------->At4g35610 --------->YAB1   <---------TOE2(3) =============HOX2a_HOX2a    ------->TEIL       <---------YAB1        <---------TOE1(3)             < ==========HOX2a_HOX2a--------->AHL20(2)      --------->YAB1       <---------REM1(1)              <--   caagtaggaggaggagatatattattatatgaatcagatcaggcactataatgaataatggtcaaggtgatgaaggttttaacagacttgtttattgact  20932300                                                      <------------CBF                                                     <---------AtLEC2                                           ------>ZmHOX2a(2)                 --------->AHL20(2)       --------->CCA1(2)                 <---------AHL20(2)       <------ZmHOX2a(2)                 *TSS<-----------GT1     <---------ARR11(3)                 --------->AHL20(1)      --------->AGP1                  --------->ARR14(2)          <----------DOF2                --------->ARR14(2)              <---------ARR14(2)      <---------ANAC58                   <---------ARR14(2)         <------------CBF             ----      <---------ANAC58  <----------DOF2  --------->ARR11(3)        --------->ATHB12          <------- ---------AHL20(2)<---------AHL20(2)     <---------AGP1           <---------YAB1             -------- -------YAB1     <---------AHL20(1)    ----------->ARR10        <-----------GT1          <-------TEIL   attattttgcttctttcaatttatttcttttcaagaaaattaagatctgagagttgcattgagtagtcaccattggatttggaagttgaggtccagttcc  20932400                                                  <---------HSFC1(2)   <---------HSFC1(1)                                              --------->ANAC58   <---------ICU4                                         ------>ZmHOX2a(2)      <---------YAB1       <----------DOF2                                        <------ZmHOX2a(2)      --------->AHL20(2)    <---------DAG2         --------->ATHB12              <---------ARR14(2)      <---------AHL20(2)   <---------ANAC58       <---------TOE2(3)               --------->ARR14(2)      <---------AHL20(1)   <---------ANAC58      <-----------GT1                  <---------ARR11(3)    <---------YAB1<------ZmHOX2a(2)  <---------ZAT6                       --------->ARR11(3)<----------DOF2  <---------ARR11(3) -->ZmHOX2a(1)                  <----------DOF2   --------->HSFC1(2)   --------->HSFB2a(2)     <----- --ARR14(2)                 <---------WRKY12  --------->ANAC58--------->YAB1   --------->ARR14(2)  <- ->ARR14(2)            ---------->DOF2<---------GLK1(1)  <---------DAG2<---------HSFB2a(2)    <------   tctagtattaacgatttggattttgaaaagtcaactttggagatcgccaagaaacatccctttattataatttctagatcaaatttgcttttttttttta  20932500                                                                 <---------AHL20(2)                                                             --------->ATHB12                                                            --------->ICU4                                                            <---------YAB1 --------->AHL20(2)                                                          --------->YAB1   <---------AHL20(2)                                                          <---------ICU4<---------ICU4                    <---------ARR14(2)                   <---------YAB1<---------YAB1               <        <---------AHL20(2)                               --------->ICU4--------->ICU4             ---        --------->AHL20(2) <---------AHL20(2)          <---------ICU4--------->YAB1               <-- ----AHL20(2)       ------->TEIL               <---------ATHB12 --------->AHL20(2)---------->DOF2 <-- ----------GT1      --------->ARR14(2)  <----------ID1 --------->YAB1<---------ICU4               --- ---AHL20(2)       <---------CCA1(2) ---------->DOF2--------->YAB1  <---------ATHB12  ---------->DOF2   ttttctgtttttaatttgtttgtatctgttttattcgaagaaagaacaaatcactcatcatcatgatttaatcataattttttaaaaagaaagaaatcaa  20932600   <---------At4g35610                                                   <-----------GT1  ------->TEIL                    <---------YAB1                     --------->TOE1(3) -------TEIL                  <-------MYC3                           --------->TOE2(3)        ------- ---->MYC2                    ------->MYC3                          <---------ANAC55(2) <---------ANAC58 -----MYC2              --------->DAG2                              ----------->GT1     <---------ANAC46 -----MYC3             ---------->DOF2            <----------DOF2  <-------TEIL         <---------ANAC58 ---->MYC3        ----------->RAV1(1)  <---------WRKY18(1) ----------->GT1              <---------ANAC55(1)   cgtgcatcttactaatttgccaacataaagcatatggttattgaccaaaaccctttcgagtttgaaaaatacgttaaactttcttctataccgtgtttga  20932700                                                                 <------ZmHOX2a(1)                                                             ---------->DOF2        <---------TOE1(3)                            <---------AHL20(2)        <---------ARR14(2)        <---------TOE2(3)               ----------->GT1  ----------->GT1       --------->ARR14(2)       <-----------RAV1(2)       --------->At5g28300 --------->AHL20(2) --------->AHL20(2)   <---------MYB46(3)           ----------->GT1   --------->TOE1(3)     <---------AHL20(2)          < ---->HVH21                  --------->ANAC46     --------->TOE2(3)  --------->YAB1      ---------->DOF2   caggtttgttcaggttttcaaattgaagaacacacagtaatatagaaaataacattaaaatgtaaaaggattaataaaacaaatatgcacaagaagcact  20932800  Previous    Next  AGI:  At3g56408.1    Description:  other RNA Range:  from: 20926476    to: 20932319    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g56410.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05190.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61670.1); similar to hypothetical protein Kpol_1058p4 [Vanderwaltozyma polyspora DSM 70294] (GB:XP_001645325.1) Range:  from: 20927151    to: 20932317    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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