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Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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        <------NtERF2
    <---------ANAC46                <---------ATHB12
    <---------MYB46(3)        ----------->RAV1(1)
   --------->ALFIN1         ------>NtERF2
   <---------AtMYB61        --------->TCP23                                           --------->ZAT14
 <---------ANAC58          <---------TCP16(1)                                 --------->TOE1(2)
 <-----------RAV1(1)       <---------ATERF1(1)                               <---------ANAC58 ------
 <---------ANAC46          ------>NtERF2                                     --------->ANAC55(2)
 <---------ANAC58          <---------PCF5                                    <---------ANAC55(1)
-----GAMYB           --------->MYB52(1)                                      <---------ANAC46<------
------MYB46(3)      ----------->HVH21                                        <---------ANAC58-------
---->ALFIN1<------------CBF--------->PCF2   <------------CBF        <---------TOE2(3) <---------ZAT14
--MYC3<---------ANAC46    <-----------TCP11(1)                   <---------YAB1--------->ALFIN1   <-
->MYC3--------->ALFIN1 <---------ANAC46    <---------KAN4(1)  <---------YAB1 <---------O2  <--------
 
ggttgtgtggtggggattgaaatgtaacgggggccacaaatgaagaatattgctgtgagtctgtgactattaatgtgtttacgtgggagtttagtgatct  20890700
          --------->ALFIN1
        <---------ANAC58                   <---------ARR14(2)                                   ----
        <---------bZIP60(2)                --------->ARR14(2)                                  <----
   --------->CCA1(2)                  <---------ANAC46                               <---------MYB52(2)
>ZmHOX2a(2)                       <---------YAB1                                 <------ZmHOX2a(2)
---At4g35610                    <-----------GT1                  --------------->AtSPL8---------->DOF2
-->At4g35610                --------->AHL20(2)            <---------GLK1(2)     <---------ARR11(3) -
--------YAB1                <---------AHL20(2)            --------->ARR11(3)    --------->ARR11(3) <
-ZAT14  <---------ANAC58  --------->ANAC55(2)             <---------ARR11(3)   --------->GLK1(1)----
 
gatgatatatgaggtgtccaattttgtttacttaattactagtgtgtatttgctaatacgagattttctttgtacatctcagagatcaactaaagtcaat  20890800
      ------>NtERF2                                                      <---------ARR11(3)
  --------->ANAC46                                           ----------->GT1
----->AHL20(2)<---------AHL20(2)                      ----------------->AGL1            <---------TOE2(3)
-----ATHB12 --------->AHL20(2)                        ----------------->AG              <---------TOE1(3)
-------->ARR14(2)                              <---------GLK1(2)        --------->GLK1(1)
---------ARR14(2)       <---------AHL20(2)--------->YAB1------>ZmHOX2a(1)--------->ARR11(3)
----->YAB1  <---------AHL20(2)           <---------YAB1--------->TOE2(3)<---------GLK1(1)         --
 
aatattcgcagccatataaatttgtattttttggtagacaaaaaatcatagattatttcctaaatagaaaaatggaaatctttctaaaatcaaggttatt  20890900
                                                <-----------HVH21
                                       <---------AHL20(2)
                                     <---------AHL20(2)
                                   <---------AHL20(2)
                                  --------->AHL20(1)                          ----------->GT1
                                  <---------ARR11(3)                   --------------->AGL15
                                  --------->ARR11(3)                   <---------------AGL15--------
            <-----------GT1       --------->AHL20(2)                   ----------------->AGL1
        <---------MYB52(1)        <---------AHL20(1)                  <-----------GT1     --------->ARR11(3)
       <----------DOF2            <---------AHL20(2)            --------->AHL20(2)       --------->GLK1(1)
      --------->TOE2(3)   <---------ZAT6    <---------LBD16     <---------AHL20(2)       <---------GLK1(1)
---------->CBF  <----------DOF2  --------->AHL20(2)       --------->YAB1 ------>ZmHOX2a(1)<---------ARR11(3)
 
tagcaatttcctttatttcctttgttttagagtcaaatatatttttttgggggtcagaaaatcatatataattttcctatatagaaaaatggaaatctta  20891000
                                                              --------->ICU4
                                                          --------->At5g28300
                                                         ----------->GT1
                                                         --------->LBD16
                                                        <---------ATERF1(2)
                                                        --------->ATERF1(2)
                                                       <------NtERF2
                                                      ------>NtERF2
                                                     --------->DEAR3(1)
                                                     <---------ATERF1(2)
                                                     --------->ATERF1(2)
                                                    --------->ERF1
                                                    --------->ATERF1(1)
                                                    --------->RAP2.3(1)
                                                   --------->At4g35610
                                                   ------>NtERF2
                                                   <---------At4g35610
                                                   <---------ATERF1(1)                        ------
                 ------------>CBF               <---------ATERF1(1)                      --------->LBD16
                --------->ANAC58                --------->At4g35610                    --------->ANAC46
                --------->ANAC46                <---------At4g35610                    <---------LBD16
 --------->ARR11(3)                            <---------DEAR3(1)                     <---------LBD16
 --------->GLK1(2)               ------>ZmHOX2a(1)--------->DEAR3(1)        ---------->DOF2  <------
 <---------ARR11(3)    ------------>CBF        --------->ANAC46 <------------CBF <----------DOF2----
->TOE2(3)       --------->ANAC58--------->TOE2(3)--------->ATERF1(1) <---------At4g35610--------->LBD16
 
gaaaaatctagggctatttaagcaatttcaattttcctaaacaaaattcgacgctgccgccggtaaaaattgagctcgtgaaagctttacccgggagaag  20891100
                                                                       --------->ARR14(2)
                                                                       <---------ARR14(2)
                                             <-----------HVH21     <---------LBD16
                                    <---------ANAC46        ----------->GT1
      <---------YAB1              --------->MYB52(1)       --------->ALFIN1    --------------->AtSPL8
      --------->At4g35610        ----------->HVH21      <---------AtMYB61 ----------->HVH21
    --------->YAB1              --------->DEAR3(2)   --------->ALFIN1--------->LBD16               <
----->GT1                      --------->ANAC58  <------NtERF2    --------->MYB52(1)               -
-----------------TaNAC69(2)    --------->ANAC46<---------ANAC46  <---------ARR14(2)               --
------->GT1                    --------->ANAC58--------->ETT(1)  --------->ARR14(2)  ----------->RAV1(1)
 
tgaaaaatcatcagagtttttgagaaattcttccaagcgacggagagatgtcggagatggaggtggagaaaccggatttgacattgtacaacacaatgac  20891200
                                                                                                   -
                                                                                                   <
                                                                                                  --
                                                                                                  --
                                                                                                  --
                                                                                                  <-
                                                                                                  --
                                                                                                 ---
                                                                                                 ---
                                                                                                 ---
                                                                                                <---
                                                                                                ----
                                                                                              ------
                                                                                              <-----
                               <------NtERF2                                                  <-----
                              ------>NtERF2                                                   ------
                              --------->LBD16                                                 ------
                             --------->ANAC46                           --------->YAB1        <-----
        ----------->GT1      <---------LBD16             <-----------HVH21                 <--------
 ------->GAMYB               --------->LBD16        <---------LBD16    <---------YAB1    --------->ANAC58
---------At4g35610          <---------LBD16       ------->TEIL      <---------YAB1       <---------ALFIN1
-------->At4g35610       ------->TEIL     --------->GLK1(2) <---------At5g28300          --------->ANAC58
------->MYB52(1)    --------->At4g35610  <---------GLK1(2) <-----------GT1    ----------->RAV1(1)---
 
tcaactgaaggaagtttataagccgatgaatcccggcaaaatcggaatctatgtatgcggtatcaccgcttacgattatagccacattggccacgctcgt  20891300
 --------->DEAR3(1)
 <---------TGA1a
 <---------ANAC46
 --------->TGA1a
 <---------O2
 <---------ANAC58
 <---------ANAC58
 --------->O2
 ============================bZIP_DOF
--------->ATERF1(1)
<------NtERF2
----->NtERF2
---------RAP2.6(3)
------->ATERF1(2)
------->DEAR3(1)
------->RAP2.3(3)
--------ATERF1(2)
------->RAP2.3(2)
------>ATERF1(1)
------>RAP2.3(1)
------>DEAR3(2)                                             <---------AHL20(2)
------ATERF1(1)                                      <---------MYB46(3)              ------->TEIL
----->SPL7                                         >>>>>>>>>ARR2                     --------->ARR14(2)
->PIF5                                             >>>>>>>>>ARR1                     <---------ARR14(2)
--MYC2                       <---------At4g35610   >>>>>>>>>ARR1                  --------->ANAC58
--MYC3                       --------->At4g35610   >>>>>>>>>ARR2                  --------->ANAC58
->MYC3                      --------->MYB52(2)    <------ZmHOX2a(1)               <---------ANAC55(2)
->MYC2                      <---------DEAR3(2)  <---------TOE2(2)                 --------->ANAC55(2)
--PIF5  ------>ZmHOX2a(1)<-----------HVH21      <---------TOE1(2)           --------->MYB59---------
----OsbHLH66            --------->ANAC46      <---------SPL7--------->AHL20(2)<-----------HVH21
------>DEAR4(2)   <----------DOF2            --------->DEAR3(1)          <----------DOF2 <---------LBD16
 
gccgccgtgtccttcgacctcctttacaggtcagttccatagttttcgccgtaggattgttgtttaatttgaatttctttaggtcacgaatttggggaaa  20891400
                                                                                             -------
                                                                                             <------
                                                                                  <-----------GT1
                                           <---------TOE2(3)                     <-----------GT1
                                 --------->At4g35610                        <---------MYB52(1)    <-
                                 <---------At4g35610                    <---------ZAT2       <------
                              <---------MYB52(1)        --------->TOE1(3)  ----------->GT1   -------
-->GT1  --------->AHL20(2)  <---------ZAT6<-----------GT1               <---------At4g35610 <-------
 
aatcccaacaatttaaaactaattttgtctattgttagcttcgattaacaatgtactaagcttagagacatttgaagctggtatttatctctctagtgta  20891500
<---------WOX13(1)
<--------P                                                                             ------>ZmHOX2a(1)
-->ZAT14             <---------ZAT18                                                   <----------DOF2
---ZAT18       <---------ANAC55(2)                                                 --------->ARR14(2)
--------MYB46(3)  ---------->DOF2        <---------ANAC58                          <---------ARR14(2)
---ZAT14    --------->ARR14(2)           <---------ANAC55(2)                <---------ARR11(3)
-->ZAT18    <---------GLK1(2)            <---------ANAC46     --------->ARR11(3)  --------->GLK1(1)
--ZAT6      <---------ARR14(2)           <---------ANAC58<-----------GT1    --------->ARR11(3)
 
ctggttgattatgcagatacttaaggcacttgggttatcaagttacttatgtcagaaattttacagatgttgatgacaaggtctggtatccttttctgcg  20891600
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AGI:  At3g56300.1   
Description:  tRNA synthetase class I (C) family protein. similar to tRNA synthetase class I (C) family protein [Arabidopsis thaliana] (TAIR:AT5G38830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42791.1); contains InterPro domain Cysteinyl-tRNA synthetase, class Ia, N-terminal; (InterPro:IPR015803); contains InterPro domain Cysteinyl-tRNA synthetase, class Ia; (InterPro:IPR002308); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); contains InterPro domain Cysteinyl-tRNA synthetase, class Ia, C-terminal; (InterPro:IPR015804)
Range:  from: 20891148    to: 20893345    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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