Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             ------->TEIL                                        <---------ANAC55(2)                                       ------->TEIL                 --------->ANAC58  <---------------AtSPL8                 --------->ANAC46  <---------------AtSPL3               <-----------GT1     <---------TOE2(3)   --------->AHL20(2)              --------------->AtSPL8   <---------AHL20(2)           --------->AHL20(2)                                    <----------DOF2   <---------ARR11(3)           <---------AHL20(2)                               <XXXXXXXXXXXXXXXXXXX   --------->ARR11(3)        --------->AHL20(2)                            <---------AHL20(2)       -   <---------AHL20(1)        <---------AHL20(2)                            --------->AHL20(2)       <   --------->AHL20(1)    ----------->GT1--------->ANAC55(2)            --------->AHL20(2)           < ----->HSFB2a(2) --------->ANAC58<---------AHL20(2)                    <---------AHL20(2)     ------- -GT1  <-------TEIL   <---------ATHB12 <-------TEIL              --------->At4g35610  <---------DAG2-   gcgaatatattcatttttcacccaaacatgttaaattaatgtacgtatttttagtttaaaaaaactcagataaatatttatttcttagcttttttttagt  20674600              <---------AHL20(2)             <---------AHL20(2)        --------->AHL20(2)                      <---------RVE1(1)        <---------AHL20(2)                      <---------CCA1(1)      <---------YAB1                            <---------GLK1(1)     <---------AHL20(2)               --------->ATHB12   <---------AHL20(2)                 -------->ATHB1   <---------YAB1<---------YAB1       --------->ATHB51 XMIR1887    --------->AHL20(2)      <---------YAB1 -------->AHL20(1)            -------->ATHB1   --------->ARR14(2) ---------AHL20(1)            <---------ICU4   --------->ARR11(3)     <---------ANAC58             -- ---------AHL20(2)            --------->YAB1   <---------ARR14(2)     <---------ANAC46      --------- ---->GT1<---------AHL20(2)   --------->ATHB12 <---------ARR11(3)     <---------ANAC58     <---------WRKY45 -------->AHL20(2)           <---------ATHB12 <------ZmHOX2a(1) <---------AHL20(2)------->TEIL     <-   aaaatattattttaattttatgagtcactgaatcattgtattattgcaggatatttgaatatgaaatttatgacttgttctatgtatgtttagtcaaagt  20674700                             <---------------AGL15                            <---------ANAC58                     ---------->DOF2                                          <---------ANAC46                    <---------WRKY45                                          <---------ANAC58                    <---------WRKY12                                     --------->ATHB12                    <---------WRKY38(1)                  <---------AHL20(2)  <---------MYB46(3)     <---------ICU4<<<<<<<<<<WRKY62                 <---------AHL20(1)  ------>ZmHOX2a(1)  --------->YAB1   <<<<<<<<<<WRKY18                 --------->AHL20(1)  <---------YAB1           <--- ------->HSFB2a(2) --------->WRKY18(1)              --------->AHL20(2) --------->TOE2(3)     <------- ->DOF2 --------->YAB1       --------------->AGL15 <---------CCA1(2)<---------ARR11(3)     ---------- --------HSFB2a(2) <<<<<<<<<<WRKY40              --------->YAB1    <---------CCA1(2)---------->DOF2 -   tctataacaatgacaattttggtcaaagttccttcatttagatgtattcattcatatattaaaaatactatatccttattggttgtaaaagaatagatac  20674800                                                                                         <-----------                                                                                         ------------                                                   --------->AHL20(2)                    --------->TOE2(3)                                                   <---------AHL20(2)                    --------->TOE1(3)      <---------AHL20(2)                       <---------ICU4                            <---------MYB59   <---------ICU4                           --------->YAB1                              <---------ANAC55(2) -------DOF2                               <-------TEIL                                 ------------- --GLK1(2)                             <---------YAB1                          ------------>CBF ->ARR10                          --------->AHL20(1)                       --------->ZAT14         <- -------->YAB1 ------>ZmHOX2a(1)  <---------AHL20(1)                  ------------>CBF  -------------   tttcataatttatactcctagtcatgttcttgctaatatatatgattcataatttaaataacatagactaaattcaatgtagtcaatgttacctaaacta  20674900                                                                <---------HSFB2a(2)                                                              *TSS                                                              <-----------GT1                                                        --------->MYB46(3)                                                        <---------ATHB12                                                        ------------>CBF                         <---------ANAC58              -------->P                         <---------ANAC58              ------>MYB46(1)   <----------DOF2 <---------AHL20(2)                  ------>MYB83  <---------DAG2  --------->ICU4                  --------->ANAC58 ----AGL15        --------->AHL20(2)    <-----------GT1--------->ANAC46                           <-- --->AGL15   --------->LBD16<---------ZAT2        --------->ANAC58         <---------ANAC58       --- ---->AGL1   ----------->GT1<---------At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --- ----------GT1<---------MYB52(1)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------ANAC58    ------ ---->AG   <---------LBD16<---------ZAT18       <---------ALFIN1--------->HSFB2a(2)        <---------YAB1   gtcacctttcttctccggtaataaatagcgagcttatatgttttacatagccactccaaccaatttacagaaccatggcttccattactaattctcatta  20675000                                                                                    <---------ANAC46                                                                                    <---------ANAC58                                                                                    <---------ANAC58                                                                                --------->SPL7                                                                                --------->RAP2.6(3)                                                                              ----------->HVH21                                                                             --------->MYB46(3)                                                                             <-----------RAV1(2)                                                                            --------->At4g35610                                                                           ----------->RAV1(1)                                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                        --------->ANAC58                                                                        --------->ANAC58            <---------CCA1(2)                                         --------->At4g35610          <---------ANAC58                                         --------->At4g35610          <---------ANAC58<---------YAB1                           <---------At4g35610    <xxxxxxxxxx -------AHL20(1)        <----------DOF2<----------DOF2            ----------->RAV1(1)    <-----------GT1 ------>AHL20(1)     <-----------GT1<-----------GT1               =======================RAV ------>ARR11(3) <------------------------ANAC81            =============================RAV --->AHL20(2)   <----------DOF2     <---------AHL20(2)      <-----------RAV1(1)--------->MYB52(1)   tatattgttgtttcttatcttttttacttttattgtatttactttagcattagatttatcaaatgttgcagcagaagcaccagacggcttgttacctctg  20675100                                                                                       --------->ARR14(2)                                                                                       <---------ARR14(2)                                                                                      <----------TaMYB80                                                                                      <---------CCA1(2)             <---------AHL20(2)                                                       --------->GLK1(1)            --------->AHL20(2)   --------->MYB52(1)                                   <---------GLK1(1)         ------->MYC2      --------->ZAT14                                     --------->ALFIN1         <-------MYC3      <---------ZAT14                                    xxxxxxxxxxxxxxxx>smallRNA(i)         <-------MYC2  <---------ALFIN1                                    --------->ATHB12         ------->MYC3----------->RAV1(1)                      --------->ARR14(2)     <---------KAN4(2)   --------->DAG2 --------->ANAC58                            <---------ARR14(2)     ---------->TaMYB80  ---------->DOF2 --------->ANAC58                    >>>>>>>>>EIN3       <---------YAB1 xxxxxxsmallRNA(s)--------->ANAC46                   <-------TEIL       <------ZmHOX2a(1)   tccaaaaagcacgttttaattcgcaacactgttcagaacggacaagttttgaatatacattgcaaatccagtgaggatgatttggggcatatccgtctta  20675200                                                                                    ------>NtERF2                                                                    <---------AtMYB61                            <---------ZAT6                         ----------------------->TaNAC69(2)                          <---------ANAC46                       <----------DOF2  ----------->HVH21                          <---------ANAC55(1)                    <---------DAG2 --------->ANAC58    <                       --------->GLK1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->ANAC46  ---      <---------ARR14(2)  <---------ANAC58                  <-----------HVH21   --------->ANAC58 <---      --------->ARR14(2)  <---------ANAC58               <-------GAMYB         ------->TEIL ---------   aacatggggatacttggggtttcagatttcgtgttaacatggcactaactacgagatttcgttgtcacttttggtggtatgcacgcgaccatctaggcca  20675300                           <---------ETT(2)                           --------->ETT(2)                           <---------ZAT14                           --------->ZAT14                        <---------------AGL15                        ===================================MADS_MADS                      <---------At5g28300                 <---------AHL20(2)    <-----------GT1  <-----------GT1                   --------->RVE1(1)             --------------->AtSPL8 ---------YAB1  <---------AHL20(1)                     --------->CCA1(1)   <---------ANAC58      <--- ------>YAB1    --------->AHL20(1)               ----------->GT1           <---------ANAC58      ---- ------YAB1     --------->ARR11(3)       --------->GLK1(2)              ------->TEIL <---------------AtSPL8 >ANAC46        <---------ARR11(3)       <-----------------AG        <---------YAB1  <---------------AtSPL3   ttatagttactggtttgatatatttactgtatacagagacgataatccatttggaaaatatccaatttgcgatgaatgcgtttggaatatgtacgaatta  20675400                                                <---------AHL20(2)                                        <------MYB46(1)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------ANAC58         <------MYB83               <---------ANAC46xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               <---------ANAC58--------->WOX13(1)                                              ------      <----------DOF2   --------->YAB1 <---------AtMYB61 ----------->GT1                      <------ ------ANAC55(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            <---------SPL7 ------->GT1  ---------->ID1  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                  <---------YAB1   agtgaaaactttatttgtcgtataaatcgtgatcaatctggatggtgttttaaaatggacagagaaaattaagaagaaaacacattatcgttcgatgtat  20675500  Previous    Next  AGI:  At3g55677.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55672.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83400.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 20674962    to: 20675555    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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