Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <----------DOF2                                      <---------At4g35610                                      --------->ZAT2                                      <---------ZAT2                                      --------->At4g35610                                   ------->GAMYB                                 ------>MYB83                                        --------->AHL20(2)                     --------->MYB52(1)--------->AGP1                   ------>ZmHOX2a(2)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------WOX13(1)                 --------->ANAC58-------->P                      --------->ATHB12    <---------AHL20(2)          <---------ARR11(3)     ------>MYB46(1)            <------ZmHOX2a(1)   <---------TOE2(2)         <---------GLK1(2)      <---------ALFIN1            ===================HOX2a_HOX2a  <-------- ---------HVH21  --------->ANAC58>>>>>>>>>MYB98       --------->At4g35610     --------->TOE2(2)   tgtcatagacagcatcttcaagctaagggaagcccaacccagctctatcgtcgatgagatgaggaagtcattgatcgatacctatgtttaaattttgttt  20647300                                                                                                    -                                                                                                   <-                                                                                                 <---                                                                                                 <---                                                                                           <---------YAB1           --------->ANAC58                                                             <---------AHL20(1)           <---------ALFIN1                                                        <---------AHL20(2)           --------->ANAC58                                                  <---------At4g35610 <---    ----------->HVH21                                                  --------->ICU4   --------->AHL20(2)  <---------AtLEC2                                  --------->YAB1  <---------AtLEC2    <---------AHL20(2) -YAB1     --------->ANAC46            <-----------HVH21  <---------ZAT14    --------->At4g35610 <---   gtttggatgacacacacatcccaacatcgccaatgtgtcaatgtcagaaaattttcatactctactgtttgcaagaattagctgttttattttatttttg  20647400                                                                                  <---------ZAT14       <-----------GT1   <-----------RAV1(1)                                      --------->ZAT14      <-----------GT1 <---------ARR14(2)                                      <-----------GT1 ---------->GT1       --------->ARR14(2)                                      --------->ZAT6 --------AtMYB61      --------->GLK1(2)                                   ------>ZmHOX2a(1) --------RAV1(1)     <---------GLK1(1)                                   --------->TOE2(3) ------ANAC58        --------->GLK1(1)    ------->TEIL             --------->KAN4(2) ------ANAC58    <---------TOE2(3)       <---------CCA1(2)        --------->HSFB2a(1)             <-- ------ANAC46  ---------->DOF2       <----------DOF2              <---------HSFB2a(1)--------->ANAC46   tgtggtttttaacagtttaaaggaaatctgttgatgtctctttgaatctttctgagtaagtgataagaaaattctccttaatactacacacattttcaat  20647500                      <-------TEIL                   <------MYB83                                                 --------->ARR14(2)                   <------MYB46(1)                                       ----------->GT1            <---------ALFIN1                                             <------MYB83 <---------ARR14(2)           <-----------------AGL1                                        <------MYB46(1)           ----------------->AGL3                                       --------->MYB59          --------->TCP16(2)                                            --------->MYB46(2) ----------         --------->PCF2                                     <---------DOF5.7(2) <---------ARR14(2)         <---------TCP16(1)                                 --------->MYB52(1) <---------GLK1(1)-----         <---------PCF5                      --------->ATHB12 <------------MYB.PH3(1) --------->ARR14(2)         <---------TCP11(2)                <<<<<<<<<<<<<<<<<LFY         --------------->AtSPL3  <---- ---------GT1     --------->MYB59          >>>>>>>>>>>>>>>>>LFY         --------------->AtSPL8  -----   tttcaatttggggtccacattaggttcaaattttagtggagaagaaaccattggtgaatggataacggttttgttcggtacaaatccgaattctgcaatt  20647600     --------->REM1(2) <---------DAG2 -->CBF     --------->DAG2  <---------ANAC46                       <----------DOF2 ---->AHL20(2)         <----------DOF2                         <------ZmHOX2a(1) -----AHL20(2)        <---------DAG2                   ---------->DOF2                             <- ---->YAB1 ---------->DOF2 ---------->ID1            *TSS    --------->MYB59               <---------CCA1(2)   atatgtgtgtagataaagttaacacctttttcgtttagatagtttgaagattaaactgaaagttaggacctttcatttccaatctctaaacccatttctc  20647700                    <---------YAB1               <---------bZIP60(1)            ----------->HVH21          <---------At4g35610          --------->At4g35610                                                <-----------GT1          --------->ZAT2                                          <---------At4g35610         --------->GLK1(2)    --------->TOE1(2)       <<<<<<<<<TBF1  ----------->GT1 --------YAB1  --------->bZIP60(1)                ---------->ID1  <---------ZAT2   tacgattagagaagctgacatcaaaattgaaacttgggaaatttttggatttgttcttcttctatggcaactggtaaattttctgtttctctataactga  20647800                                                       <------NtERF2                                                      ------>NtERF2                                                     <---------ANAC46                                                     <---------LBD16                                                     --------->ETT(1)                              <-                                  <---------TOE2(3)  --------->LBD16                      <---------At4g35610                   <---------ANAC58                 <---------LBD16                       --------->ZAT2                   <---------ANAC58         <---------MYB52(1)                            --------->At4g35610               <----------DOF2   <-----------GT1<---------ANAC58                          <---------ZAT2     <---------DAG2<---------ANAC46--------->ANAC55(2)--------->LBD16                 <-----------HVH21     <----------DOF2          <----------DOF2   <---------ANAC58              ----------->GT1      --   tttatgactttttctgactttgtgtgttcattcttttacgttttctgtttgtttgccgggaaacaaaatgaagaagacgatggtgaattgtcagctcgtt  20647900                                                                          <---------ARR14(2)                                                                          --------->GLK1(2)                                                                ------>MYB46(1)          --------->YAB1                                                             --------->MYB46(3)       <----------DOF2              <-------TEIL                                  --------->ANAC58   <---------MYB52(1)          <---------MYB46(3)                  <---------MYB52(1)------>MYB83 <---------ANAC58       ------->MYC3                    <-------MYC3         --------->ANAC58 <---------ANAC46      <-       <-------MYC3                    ------->MYC3        ------->GAMYB  --------->ARR14(2)       <- --------HSFB2a(2)       <----------DOF2--------->ALFIN1  --------->MYB46(3) <---------ANAC58<------- ------->HSFB2a(2)  ---------->ID1    <---------O2   ----------->GT1     <---------GLK1(2)  <--------   accagaacacgttggatgcattgtcgtctttgatcacaaaacgtggccgtttagctagtaacaaccaatctcaccgattccgtttgctctttcattatct  20648000                               <---------ANAC58                               <---------ANAC46                               <---------bZIP60(2)         <---------ATHB12 <---------ANAC58 --------TOE2(3)          <---------ANAC46                                        <-------TEIL --------TOE1(3)   <----------DOF2           <---------TOE1(1)                --------->DAG2 --ARR11(3) <---------ANAC55(2)<---------ANAC58                     ------->TEIL --------->ARR11(3) -ICU4 --------->ANAC46   <---------ANAC58 <-----------GT1    <-------TEIL  ---------->DOF2       <--   caaggttacaaatcacttaagcttttttgtgtgtcgtgccaaaatttacgaggtttttgaaagattcatgaatctcttaaaaggttcttgagcttgaaga  20648100                                                                                    <---------ARR11(3)                                                                                    --------->ARR14(2)                                <------NtERF2                                       --------->ARR11(3)                               <------NtERF2--------->DAG2                          <---------ARR14(2)                               --------->LBD16                  <---------ANAC58    <---------GLK1(2)                              --------->RAP2.6(2)               <---------ANAC46    --------->ARR14(3)                             <---------ANAC46   <-------TEIL    <---------ANAC58    <---------ARR14(3)                             <---------LBD16<---------------AtSPL8                ----------->ARR10                        <-----------RAV1(1) <---------------AtSPL3              --------->YAB1                        <---------O2 --------->MYB52(1)   <---------TOE2(3)    <---------ATHB12                 <---------ATHB12    ---------->DOF2  <----------DOF2          --------->ICU4     <-- -----TEIL  --------->YAB1--------->ALFIN1---------->DOF2---------->DOF2   xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   tgcagtttcacaaatgaaaatcattcatgtggccggaactaaaggaaaggtacagactttaaagttccttgagattatgcaatgaagattttcaagtttt  20648200  Previous    Next  AGI:  At3g55620.1    Description:  EMB1624 (EMBRYO DEFECTIVE 1624); translation initiation factor. similar to eukaryotic translation initiation factor 6, putative / eIF-6, putative [Arabidopsis thaliana] (TAIR:AT2G39820.1); similar to unknown [Populus trichocarpa] (GB:ABK92453.1); contains InterPro domain Translation initiation factor IF6; (InterPro:IPR002769) Range:  from: 20645181    to: 20647485    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g55630.1    Description:  ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D); tetrahydrofolylpolyglutamate synthase. similar to ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B), tetrahydrofolylpolyglutamate synthase [Arabidopsis thaliana] (TAIR:AT5G05980.1); similar to ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B), tetrahydrofolylpolyglutamate synthase [Arabidopsis thaliana] (TAIR:AT5G05980.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO69132.1); contains InterPro domain Mur ligase, central; (InterPro:IPR013221); contains InterPro domain Mur ligase, C-terminal; (InterPro:IPR004101); contains InterPro domain Folylpolyglutamate synthetase; (InterPro:IPR001645) Range:  from: 20647653    to: 20650471    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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