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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                            --------->ANAC58
                                                            --------->ANAC58
                                                   <---------ICU4
                             --------->ANAC46   --------->YAB1 ------>MYB83     <---------ANAC58
                           --------->ANAC46   <---------ARR11(3)  --------->TOE2(3)
  --------->ZAT14       --------->ARR14(2)    --------->ARR11(3)  <----------DOF2<---------WOX13(1)
  <---------ZAT14       --------->GLK1(2)  --------->AHL20(2)  ------>MYB46(1)  <---------ANAC58
---->ZAT6               <---------ARR14(2) --------->YAB1   --------->ANAC46   --------->ATHB12
----ZAT14          ---------->DOF2  --------->ANAC46  --------->TOE2(3)    <----------DOF2
--->ZAT14   --------->AHL20(2)     <-------TEIL<---------YAB1<---------MYB59  <---------YAB1   -----
--->ZAT18   <---------AHL20(2)----------->RAV1(1)  <---------GLK1(2) --------->YAB1            <----
 
actactacagtatttttaattttaaagaatccacaacatacaccattaatatcataatctcaaacccaactttaatgacttttgattgccacttaaaaca  20644800
                                                --------->YAB1
                                             --------->YAB1
        --------->TOE2(3)                 --------->YAB1             <---------ALFIN1      <--------
---->ARR11(3)                           ------>MYB46(1)           <-----------GT1       <-----------GT1
-----ARR11(3)  <-----------GT1          ------>MYB83     <---------CCA1(2)      <-----------GT1
 
tctctacaatacctcattttacatgctccaattccccattaccaactataatcttactccatctcttattcaccacttacatttttccaaatcacattct  20644900
                                                      --------->YAB1
                                                  <---------AHL20(2)
                                                 --------->AHL20(2)
                                                 <---------AHL20(1)
                      --------->YAB1             --------->AHL20(1)                           <-----
                     <---------YAB1             --------->YAB1                    <----------DOF2
                   --------->YAB1        <-----------GT1                   <---------ZAT6     <-----
-GLK1(2)          <---------YAB1      <---------AHL20(2)            ---------->DOF2     <---------ICU4
 
caccaaaaaaaaactgatttcattataaaaactctcaacatttttttccaaatataatcaaaatagttttcaaaagtagtcttgactttcaacattactt  20645000
                                   <----------DOF2                                                 <
                    --------->AHL20(2)                                                             -
                    <---------AHL20(1)                                                            <-
                    --------->AHL20(1)         <---------DAG2                                     --
                    <---------AHL20(2)   <---------ICU4                                           <-
           <---------ARR11(3)<---------------AtSPL8                                  <----------DOF2
       <-----------GT1       --------------->AtSPL8          <----------DOF2    ---------->ID1    --
-----DOF2  --------->ARR11(3)<---------------AtSPL3  ------>ZmHOX2a(1)  <---------ARR11(3)    ------
----DAG2<-----------GT1   --------->ARR11(3)   <----------DOF2          --------->ARR11(3)    <-----
 
ttttttttttttaacatcttcattttattgatattgtactttcaacattccttttcctccaaggctttcaaacaagataatttgtcttctttttttttta  20645100
                                                                                                ----
                                                                                               <----
                                                                                              ------
                                                                                              <-----
                                                                                             ------>NtERF2
                                                                                            --------
                                                                                           ---------
                                                                                           ---------
                                                                                           <------NtERF2
                                                                                           ---------
                                                                                          <---------RAP2.3(1)
          <----------DOF2                                                                 ------>NtERF2
       --------->ARR11(3)   <------------CBF                                              <---------ATERF1(1)
       <---------ARR11(3)  --------->ATHB51                                               <---------DEAR3(2)
   --------->AHL20(2)      --------->ATHB12                     <---------ANAC46          <---------DEAR4(2)
   <---------AHL20(2)     <---------YAB1                        <---------ANAC58          <---------ORA47(2)
---------AHL20(2)         <---------AHL20(2)                    <---------ANAC58         <---------ATERF1(2)
-------->AHL20(2)     <---------ANAC46             <---------ZAT18      <---------TOE2(3)--------->DEAR3(1)
--------AHL20(2)      ----------->GT1              --------->ZAT18  <----------DOF2      <---------RAP2.3(3)
------->AHL20(1)   --------->ICU4          --------->AHL20(2)  <------NtERF2             --------->ATERF1(2)
--------AHL20(1)  <---------TOE2(3)       --------->AHL20(2)  <---------MYB46(3)         <---------DEAR3(1)
------->AHL20(2) --------->YAB1         <----------DOF2       --------->ABI4(2)          <---------RAP2.3(2)
--->AHL20(2)    <---------AHL20(2) --------->ATERF1(1)        ------>NtERF2             --------->ATERF1(1)
----AHL20(2)   <---------AHL20(2) <---------ATERF1(1)   --------->MYB52(1)      *TSS--------->LBD16
 
atttatttaaaatctttttttaatgatgtataattggagcctcctttaaattagggcccaaacggtggcttcttttagattataacccagggccggcgca  20645200
                                                           <<<<<<<<<TBF1
                                                        <<<<<<<<<TBF1
                                                     <<<<<<<<<TBF1          ------>NtERF2
---->P                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
-----ALFIN1                                       <<<<<<<<<TBF1     <<<<<<<<<TBF1
--->ATERF1(1)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            ---
-NtERF2                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          --------
->ANAC46                                  <------------------------ANAC81   <---------At4g35610  ---
>RRTF1(1)                     <---------ATHB12 <<<<<<<<<TBF1  <<<<<<<<<TBF1--------->DEAR3(1)    ---
>ATERF1(1)           <---------YAB1    <------------------------ANAC81  --------->ANAC46--------->HSFB2a(2)
>RAP2.3(1)       <---------DAG2   <------------------------ANAC81<<<<<<<<<TBF1<----------DOF2  <----
 
acccttcttcttaacaaaaaccttttgattccaattgttcttctctcttcttcttcttcttcttcttcttcttcttcgccgcttcttctctctcgaattc  20645300
            --------->HSFC1(2)
       --------->ANAC58               ------>MYB83
       --------->ANAC58             <---------MYB46(2)
<---------ALFIN1          <---------ANAC58                                                  --------
------>ANAC58             <---------ANAC58                                             <-----------HVH21
->ARR14(2)  <---------At4g35610     <---------MYB59                                <-----------GT1
------>ANAC58       ------>ZmHOX2a(1) ------>MYB46(1)                     --------->TOE2(3)<------NtERF2
------>ANAC46<---------GLK1(2)     --------->ANAC46                      ----------------->AGL1  ---
-------GT1  <---------HSFC1(2)   <-----------GT1                       <-----------GT1--------->ANAC46
 
accccatctcaagtaagcttctcctatttccttgttataccaaacaaacaccatcttcaagtcaattgattttgttaccctaattgttcccgtccccgtc  20645400
                                                                                        ------->TEIL
                                                                                     <---------ANAC58
                                                                                     <---------ANAC46
                                                                                     <---------ANAC55(2)
                                                                                     <---------ANAC58
                                                                                     ----------->GT1
    <---------YAB1                                                                   <---------ANAC55(1)
    <---------AHL20(2)                                                       <---------ARR11(3)
   --------->AHL20(2)                                               ------->TEIL     --------->ANAC55(2)
   <---------AHL20(1)                                           <---------TOE2(3) ----------->TGA1
   --------->AHL20(1)                                        --------->DOF5.7(2) <-----------HVH21
   <---------AHL20(2)                                --------->TOE2(3)       --------->ARR11(3) ----
->ANAC46                                           ------->TEIL<---------DOF5.7(2)----------->HVH21
-------->GT1          <----------DOF2          --------------->AtSPL8       <---------GLK1(1)   ----
 
ttgtaatataatcgaaaaatcgaaactttctgttttagagacatggattttgtgaaccctaattgttaacgaatcgttgatatctgtgacgtatataaac  20645500
                                      <---------MYB52(1)
                                      --------->DOF5.7(2)          <---------TOE1(2)        <-------
                                     --------->TOE2(3)      ------>NtERF2   <---------ZAT14 --------
                                --------->ALFIN1  <---------------AGL15     --------->ZAT14---------
                              --------->At4g35610<-----------------AGL1     <---------At4g35610
    <---------ANAC58         <---------TOE2(2)<---------ALFIN1     <---------TOE2(2)      <---------YAB1
    <---------ANAC58        <-----------RAV1(2)  <-----------------AGL3     --------->At4g35610
----->TOE2(3)             --------->ANAC46  <---------ATERF1(1) --------->ANAC58 --------->At4g35610
----->TOE1(3)     <----------DOF2  ------->TEIL------>ZmHOX2a(1)--------->ANAC58 <---------At4g35610
 
cctaatttcgttttcatgtttctttatctacgcaggtgtacgttagcctcctccctctaatggcgactcgtaagttttctgcagagcttacttatgatat  20645600
                                                     --------->ARR11(3)
                                                     <---------ARR11(3)
                                                     <---------ARR14(2)
                                                   <---------TOE1(2)
                                       <---------ANAC46
 <---------ANAC46        --------->TOE2(3)      --------->ANAC58                  <------MYB46(1)
--ARR11(3)               --------->TOE1(3)      --------->ANAC46                  <------MYB83
->ARR11(3)   <---------ANAC46      <---------GLK1(1) --------->ARR14(2)  ------->GAMYB
>YAB1<-----------GT1    ----------------->AGL1  --------->ANAC58     --------->MYB46(3) <----------DOF2
 
tgttgtgtttactcttctgtgtatttgaccttaatgggatttgtgggtaatacgcaggtcttcagtttgagaacaactgcgaagttggtgtcttttccaa  20645700
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AGI:  At3g55620.1   
Description:  EMB1624 (EMBRYO DEFECTIVE 1624); translation initiation factor. similar to eukaryotic translation initiation factor 6, putative / eIF-6, putative [Arabidopsis thaliana] (TAIR:AT2G39820.1); similar to unknown [Populus trichocarpa] (GB:ABK92453.1); contains InterPro domain Translation initiation factor IF6; (InterPro:IPR002769)
Range:  from: 20645181    to: 20647485    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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