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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
--------->
ANAC58
<---------
ICU4
--------->
ANAC46
--------->
YAB1
------>
MYB83
<---------
ANAC58
--------->
ANAC46
<---------
ARR11(3)
--------->
TOE2(3)
--------->
ZAT14
--------->
ARR14(2)
--------->
ARR11(3)
<----------
DOF2
<---------
WOX13(1)
<---------
ZAT14
--------->
GLK1(2)
--------->
AHL20(2)
------>
MYB46(1)
<---------
ANAC58
---->
ZAT6
<---------
ARR14(2)
--------->
YAB1
--------->
ANAC46
--------->
ATHB12
----
ZAT14
---------->
DOF2
--------->
ANAC46
--------->
TOE2(3)
<----------
DOF2
--->
ZAT14
--------->
AHL20(2)
<-------
TEIL
<---------
YAB1
<---------
MYB59
<---------
YAB1
-----
--->
ZAT18
<---------
AHL20(2)
----------->
RAV1(1)
<---------
GLK1(2)
--------->
YAB1
<----
actactacagtatttttaattttaaagaatccacaacatacaccattaatatcataatctcaaacccaactttaatgacttttgattgccacttaaaaca
20644800
--------->
YAB1
--------->
YAB1
--------->
TOE2(3)
--------->
YAB1
<---------
ALFIN1
<--------
---->
ARR11(3)
------>
MYB46(1)
<-----------
GT1
<-----------
GT1
-----
ARR11(3)
<-----------
GT1
------>
MYB83
<---------
CCA1(2)
<-----------
GT1
tctctacaatacctcattttacatgctccaattccccattaccaactataatcttactccatctcttattcaccacttacatttttccaaatcacattct
20644900
--------->
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
--------->
YAB1
--------->
AHL20(1)
<-----
<---------
YAB1
--------->
YAB1
<----------
DOF2
--------->
YAB1
<-----------
GT1
<---------
ZAT6
<-----
-
GLK1(2)
<---------
YAB1
<---------
AHL20(2)
---------->
DOF2
<---------
ICU4
caccaaaaaaaaactgatttcattataaaaactctcaacatttttttccaaatataatcaaaatagttttcaaaagtagtcttgactttcaacattactt
20645000
<----------
DOF2
<
--------->
AHL20(2)
-
<---------
AHL20(1)
<-
--------->
AHL20(1)
<---------
DAG2
--
<---------
AHL20(2)
<---------
ICU4
<-
<---------
ARR11(3)
<---------------
AtSPL8
<----------
DOF2
<-----------
GT1
--------------->
AtSPL8
<----------
DOF2
---------->
ID1
--
-----
DOF2
--------->
ARR11(3)
<---------------
AtSPL3
------>
ZmHOX2a(1)
<---------
ARR11(3)
------
----
DAG2
<-----------
GT1
--------->
ARR11(3)
<----------
DOF2
--------->
ARR11(3)
<-----
ttttttttttttaacatcttcattttattgatattgtactttcaacattccttttcctccaaggctttcaaacaagataatttgtcttctttttttttta
20645100
----
<----
------
<-----
------>
NtERF2
--------
---------
---------
<------
NtERF2
---------
<---------
RAP2.3(1)
<----------
DOF2
------>
NtERF2
--------->
ARR11(3)
<------------
CBF
<---------
ATERF1(1)
<---------
ARR11(3)
--------->
ATHB51
<---------
DEAR3(2)
--------->
AHL20(2)
--------->
ATHB12
<---------
ANAC46
<---------
DEAR4(2)
<---------
AHL20(2)
<---------
YAB1
<---------
ANAC58
<---------
ORA47(2)
---------
AHL20(2)
<---------
AHL20(2)
<---------
ANAC58
<---------
ATERF1(2)
-------->
AHL20(2)
<---------
ANAC46
<---------
ZAT18
<---------
TOE2(3)
--------->
DEAR3(1)
--------
AHL20(2)
----------->
GT1
--------->
ZAT18
<----------
DOF2
<---------
RAP2.3(3)
------->
AHL20(1)
--------->
ICU4
--------->
AHL20(2)
<------
NtERF2
--------->
ATERF1(2)
--------
AHL20(1)
<---------
TOE2(3)
--------->
AHL20(2)
<---------
MYB46(3)
<---------
DEAR3(1)
------->
AHL20(2)
--------->
YAB1
<----------
DOF2
--------->
ABI4(2)
<---------
RAP2.3(2)
--->
AHL20(2)
<---------
AHL20(2)
--------->
ATERF1(1)
------>
NtERF2
--------->
ATERF1(1)
----
AHL20(2)
<---------
AHL20(2)
<---------
ATERF1(1)
--------->
MYB52(1)
*
TSS
--------->
LBD16
atttatttaaaatctttttttaatgatgtataattggagcctcctttaaattagggcccaaacggtggcttcttttagat
tataacccagggccggcgca
20645200
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
------>
NtERF2
---->
P
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
-----
ALFIN1
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
--->
ATERF1(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
---
-
NtERF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------
->
ANAC46
<------------------------
ANAC81
<---------
At4g35610
---
>
RRTF1(1)
<---------
ATHB12
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
--------->
DEAR3(1)
---
>
ATERF1(1)
<---------
YAB1
<------------------------
ANAC81
--------->
ANAC46
--------->
HSFB2a(2)
>
RAP2.3(1)
<---------
DAG2
<------------------------
ANAC81
<<<<<<<<<
TBF1
<----------
DOF2
<----
acccttcttcttaacaaaaaccttttgattccaattgttcttctctcttcttcttcttcttcttcttcttcttcttcgccgcttcttctctctcgaattc
20645300
--------->
HSFC1(2)
--------->
ANAC58
------>
MYB83
--------->
ANAC58
<---------
MYB46(2)
<---------
ALFIN1
<---------
ANAC58
--------
------>
ANAC58
<---------
ANAC58
<-----------
HVH21
->
ARR14(2)
<---------
At4g35610
<---------
MYB59
<-----------
GT1
------>
ANAC58
------>
ZmHOX2a(1)
------>
MYB46(1)
--------->
TOE2(3)
<------
NtERF2
------>
ANAC46
<---------
GLK1(2)
--------->
ANAC46
----------------->
AGL1
---
-------
GT1
<---------
HSFC1(2)
<-----------
GT1
<-----------
GT1
--------->
ANAC46
accccatctcaa
gtaagcttctcctatttccttgttataccaaacaaacaccatcttcaagtcaattgattttgttaccctaattgttcccgtccccgtc
20645400
------->
TEIL
<---------
ANAC58
<---------
ANAC46
<---------
ANAC55(2)
<---------
ANAC58
----------->
GT1
<---------
YAB1
<---------
ANAC55(1)
<---------
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(2)
------->
TEIL
--------->
ANAC55(2)
<---------
AHL20(1)
<---------
TOE2(3)
----------->
TGA1
--------->
AHL20(1)
--------->
DOF5.7(2)
<-----------
HVH21
<---------
AHL20(2)
--------->
TOE2(3)
--------->
ARR11(3)
----
->
ANAC46
------->
TEIL
<---------
DOF5.7(2)
----------->
HVH21
-------->
GT1
<----------
DOF2
--------------->
AtSPL8
<---------
GLK1(1)
----
ttgtaatataatcgaaaaatcgaaactttctgttttagagacatggattttgtgaaccctaattgttaacgaatcgttgatatctgtgacgtatataaac
20645500
<---------
MYB52(1)
--------->
DOF5.7(2)
<---------
TOE1(2)
<-------
--------->
TOE2(3)
------>
NtERF2
<---------
ZAT14
--------
--------->
ALFIN1
<---------------
AGL15
--------->
ZAT14
---------
--------->
At4g35610
<-----------------
AGL1
<---------
At4g35610
<---------
ANAC58
<---------
TOE2(2)
<---------
ALFIN1
<---------
TOE2(2)
<---------
YAB1
<---------
ANAC58
<-----------
RAV1(2)
<-----------------
AGL3
--------->
At4g35610
----->
TOE2(3)
--------->
ANAC46
<---------
ATERF1(1)
--------->
ANAC58
--------->
At4g35610
----->
TOE1(3)
<----------
DOF2
------->
TEIL
------>
ZmHOX2a(1)
--------->
ANAC58
<---------
At4g35610
cctaatttcgttttcatgtttctttatctacgcag
gtgtacgttagcctcctccctcta
atggcgactc
gtaagttttctgcagagcttacttatgatat
20645600
--------->
ARR11(3)
<---------
ARR11(3)
<---------
ARR14(2)
<---------
TOE1(2)
<---------
ANAC46
<---------
ANAC46
--------->
TOE2(3)
--------->
ANAC58
<------
MYB46(1)
--
ARR11(3)
--------->
TOE1(3)
--------->
ANAC46
<------
MYB83
->
ARR11(3)
<---------
ANAC46
<---------
GLK1(1)
--------->
ARR14(2)
------->
GAMYB
>
YAB1
<-----------
GT1
----------------->
AGL1
--------->
ANAC58
--------->
MYB46(3)
<----------
DOF2
tgttgtgtttactcttctgtgtatttgaccttaatgggatttgtgggtaatacgcag
gtcttcagtttgagaacaactgcgaagttggtgtcttttccaa
20645700
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AGI:
At3g55620.1
Description:
EMB1624 (EMBRYO DEFECTIVE 1624); translation initiation factor. similar to eukaryotic translation initiation factor 6, putative / eIF-6, putative [Arabidopsis thaliana] (TAIR:AT2G39820.1); similar to unknown [Populus trichocarpa] (GB:ABK92453.1); contains InterPro domain Translation initiation factor IF6; (InterPro:IPR002769)
Range:
from: 20645181
to: 20647485
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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