Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                               ------                                                                                             ========                                                                                             --------                                                                                             ========                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             ========                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                          --------->ARR14(2)                                                                                          <---------ARR14(2)                                                                                         <------ZmHOX2a(1)                           <-------TEIL                                                 --------->ANAC46                         >>>>>>>>>GATA-4                                                --------->ANAC58                         >>>>>>>>>GATA-2   <---------ANAC55(2)                     <---------ZAT2                         >>>>>>>>>GATA-3<---------ARR11(3)                       <---------ZAT18                  <---------ANAC58      <---------GLK1(2)                       <---------ANAC58          <----------DOF2<---------ARR14(2)--------->ANAC55(2)                  <---------ANAC58      <----------DOF2    >>>>>>>>>GATA-1--------->ARR11(3)             ---------->DOF2  --------->ANAC58   <-----------GT1<---------ANAC58  ---------->DOF2       <------ZmHOX2a(1)    --------->STY1(2)----- >ZmHOX2a(1)  <----------DOF2--------->TOE2(3)  --------->ZAT6         ==============================   acatttttctttctttcttttcttgtggattcattaacaaaagatacttgactctaccgaggaggccattgagcaaagcctagcgagcacaggacacgcg  20633200 ----->HVH21 --->ANAC46 =====================bZIP_DOF ->ANAC58 ==========================================bZIP_DOF ->ANAC46 --ANAC55(2)     <---------ARR11(3) ->ANAC55(2)     --------->ARR11(3) ===================================bZIP_DOF                              ------>ZmHOX2a(2)       <-- --TGA1a         --------->AHL20(1)                                     <---------ARR11(3)  <-------- ->TGA1a        --------->CCA1(2)                                       --------->ARR11(3) <--------P ->O2   ----------->RAV1(1)                   >>>>>>>>>>>>>>>>>LFY    --------->ICU4     <---------MYB46(3) ->ANAC58      <---------ARR11(3)           <---------ANAC46     --------->ANAC46       <---------YAB1 --O2  <----------ID1    ---------->DOF2    <---------ANAC58  ------>ZmHOX2a(2)       <---------ICU4 ------>RAV1(1)--------->ARR11(3)           <---------ANAC58<---------ARR11(3)       --------->ICU4 ==bZIP_DOF---------->DOF2      ---------->DOF2             --------->ARR11(3)     --------->YAB1<---   acaacaagagcgacaaagatatattcacaaagctcaaagacaagttgcttccagtggctcttgatcttcgccatgatctgtgtgttcataatggttgttc  20633300        <-----------HVH21      --------->LBD16    <---------LBD16                         ----------->GT1    ------>ZmHOX2a(2)                   ------>MYB83  <---------ARR14(2)                  <---------MYB59  --------->ARR14(2)                 ----------------->AGL1                                      <--- -----GAMYB                          ----------------->AG                    --------->YAB1   <------ -MYB46(3)                    ----------->GT1    --------->GLK1(1)          <---------YAB1    ------- --------RAV1(1)          <---------YAB1------>MYB46(1)                 <----------DOF2   ---------->DOF2   tgttgatccgggtcacatagaaattgttcagattgtaataccaaattagtgaaatccaaaaaacatttcagtctctttatcatacagtttgtgaaagttc  20633400                                                             <---------GLK1(1)                                                             --------->GLK1(1)                                                    --------->CCA1(2)                                                    <---------GLK1(1)                                                   --------->ARR14(2)                                                   <---------ARR11(3)                                                   <---------ARR14(2)                                                   --------->ARR11(3)                                                   --------->ARR11(1)       ----------->GT1                         ---------->DOF2    <----------DOF2                          <---------HSFB2a(2) -------DOF2                              <---------------AGL15 ---ARR11(3)                              --------------->AGL15 <---------ICU4             ---------- -->ARR11(3)                 ----------->GT1 --------->HSFB2a(2)--------------->AtSPL3 <------ZmHOX2a(1)   ttttgacttttgtaaattctgagtttttgatatgtgaaactatacttctaaaagatatgccagaaatcagtacaatttgtttgtgaagaggaattgagaa  20633500                        <<<<<<<<<<MYB80             <---------ZAT14                       <------MYB83            <--------P                       ----------->GT1                       <------MYB46(1)       <------MYB46(1)                   ----------->GT1     *TSS              <-----------GT1       <---------MYB52(1)                <---------ZAT18             <--      --------->YAB1  --------->MYB59        <------MYB83             <---------ZAT14          ------    <------------CBF<---------MYB52(1)  --------->ATHB12          --------------->AtSPL8      <------ZmHOX2a(1) ->GT1----------->GT1 <---------AtMYB61<---------YAB1       ---------->ID1   ---------->DOF2<--------   atgaagaattgtaatttaaccggtttggtttgaagaccggtatgatttggttagtatagtttgtcttcttcgtacacttaaaagttaaaaccctaaggaa  20633600                                                                                                    <                                                                                           --------->LBD16                                                                                          <---------ANAC46                                                                                     <---------At4g35610                                                                                     --------->At4g35610                                                                                 <---------DAG2     <                                                                         <---------At4g35610        <                                                                         --------->At4g35610  -------                      <---------ARR14(2)                              <------ZmHOX2a(2)   <---------ANAC55(1) --------ID1          --------->ARR14(2)                             <---------ARR14(2)   <---------ANAC58 ---->DOF2            --------->GLK1(2)                    <---------ZAT18       <----------DOF2<---- -TOE2(3)--------->LBD16        <----------DOF2       <----------DOF2--------->ARR14(2)   <---------ANAC58   aggccaaaacccagagactgagagaatccattttcttttaatcgccatgggtttcgctttgtgcattcgtagatcagcttctactttagcttccgtgtgt  20633700                                                                                                  ---                           <---------At4g35610                                                   ----                           --------->At4g35610                                               <-------            --------->At4g35610   <---------MYB52(1)                                         <-------       <---------ANAC58   --------->ANAC46                                                  <--------       <---------ANAC58<---------ARR14(2)                                                   <--------       <---------ANAC46--------->ARR14(2)                                              <---------O2    --------->ALFIN1  --------->ATERF1(1)                                              --------->TGA1a  <-----------RAV1(1)<---------RAP2.6(3)                                               <---------TGA1a  --------->ALFIN1   <-----------HVH21                                                 --------->O2 ---------ANAC58     <---------ATERF1(1)                            --------->At4g35610<---------ANAC58 ---------ANAC46    --------->RAP2.6(2)      <---------CCA1(2)      <---------At4g35610<---------ANAC58 ---------ANAC58 --------->ANAC58--------->TOE1(3)        --------->ANAC58             ============== -->ALFIN1  <---------At4g35610 ----------->GT1           --------->ANAC58        <---------CCA1(2) -----AtMYB61    --------->ANAC58--------->TOE2(3)        --------->ANAC46------>NtERF2==============   ggtcgtgtggctcgagctcaagccgtctccgctatcgttaatcgctcgtctcttgttcccaagccatctctgcttcggcccttcgtctctcgtggctttc  20633800       <---------ATERF1(1)       ------>NtERF2 --->ZmHOX2a(1)                <------ZmHOX2a(2) ----->TOE2(3)                <-----------HVH21                                    <---------At4g35610 ---DOF2              ---------->DOF2                                <---------GLK1(2)            --- --GLK1(1)            <---------DOF5.7(2)                            <---------ARR14(2)          ---- -ANAC58            --------->DOF5.7(2)                        <------ZmHOX2a(2) <-----------RAV1(2) -ANAC58            <---------MYB52(1)                        --------->ARR11(3)<---------At4g35610 ===bZIP_DOF       <---------RAP2.6(3)             <---------WOX13(1)--------->ARR14(2)--------->ARR11(3) ===bZIP_DOF      ----------->GT1                --------->ATHB12 <---------TOE2(3)--------->At4g35610   cttattcgacggccactgagccgttaaagtccgatcagacgcttatacaagtgattgactctgagatcaaggattctttcgaagcagatgatcacgatgc  20633900           <----------DOF2          ------>ZmHOX2a(2)               <---------ARR14(2)          ========================HOX2a_HOX2a        <---------ARR11(3)  --------->LBD16        --------->ARR11(3) --------->LBD16--------->GLK1(2)   <-----------GT1         ------>ZmHOX2a(1)   --------->MYB52(1)     <---------LBD16 --------->ARR14(2)   <---------ANAC58                  ----  --------->ICU4          --------->TOE1(2)  <-----------RAV1(1)                              <------ ------>At5g28300 <---------ANAC55(2)     ------->TEIL         <---------ANAC58      <---------HSFB2a(2) ------->GT1      --------->ANAC55(2)--------->MYB52(1) ---------->ID1  <---------YAB1        -------   ggtaataactgatctttatcacttgattcctgggaaaataaacgaatctgtgggatttgtttttttcttggtttttgatagagaattgtagaagcagtgt  20634000                         <---------ANAC58            --------->ARR14(2)                                            --------->MYB52(1)            --------->GLK1(2)                                         ------->TEIL              ----- ------->GT1<---------ARR14(2)        --------->ANAC58          --------->ATHB12             -------- ---ZAT6    ------->TEIL <---------ANAC58       <----------DOF2<---------YAB1                -------- -->ALFIN1 <---------GLK1(2)          --------->ANAC58    --------->GLK1(1)         <----------DOF2   tgaaaattggactgaatctgtgagtttgcttactctgtggaagccataagctttagtgggaactcatggttgaatctaactggagactttctatgcctta  20634100  Previous    Next  AGI:  At3g55600.1    Description:  similar to cation exchanger, putative (CAX10) [Arabidopsis thaliana] (TAIR:AT1G54110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43197.1); contains domain PD119426 (PD119426) Range:  from: 20631422    to: 20633449    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g55605.1    Description:  mitochondrial glycoprotein family protein / MAM33 family protein. similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT2G39795.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69135.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428) Range:  from: 20633599    to: 20634981    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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