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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----
-----
---------->
DOF2
--------->
ARR11(3)
------->
TEIL
----------->
GT1
---------->
HVH21
<---------
ARR11(3)
----------->
GT1
------->
GAMYB
-----
-------
At4g35610
<---------
MYB52(2)
--------->
AHL20(2)
--------->
MYB46(3)
-----
GT1
--------->
ZAT6
-------->
P
<---------
AHL20(2)
<---------
MYB52(2)
--
cactgaccaaaatgcaatttccactaacatcttgtttagtctctcactcttaccccctaaaaaaatgtatatatcagttatcaactaacatgtaaaattg
20631000
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<-------
TEIL
<---------
AHL20(2)
---------->
DOF2
--------->
ZAT14
<---------
AHL20(2)
--------->
AHL20(2)
<---------
DAG2
<---------
ZAT14
--------->
AHL20(2)
--------->
YAB1
<----------
DOF2
<---------
ZAT18
--------->
AHL20(2)
----------->
GT1
<---------
ATHB12
-----
ZAT14
<---------
AHL20(2)
<---------
ANAC55(2)
--------->
MYB52(1)
<---------
ANAC58
---->
ZAT14
--------->
AHL20(2)
<---------
AHL20(2)
<---------
TOE2(3)
--------->
WOX13(1)
---->
ZAT18
--------->
AHL20(2)
--------->
AHL20(2)
--------->
ARR11(3)
<------
ZmHOX2a(1)
------->
ANAC46
<---------
AHL20(2)
--------->
ANAC55(2)
---------->
DOF2
<---------
ANAC58
cactgcacatacatatatatatatatatatatatataatatgtaataaaaaagaactagggtttaagtaaaggacaatcacttttgggttcgaagtcgat
20631100
--------->
AtMYB61
--------->
ANAC58
<--------
--------->
ANAC46
------>
ZmHOX2a(2)
--------->
ANAC58
------>
MYB83
<---------
GLK1(1)
--------->
bZIP60(2)
--------->
GLK1(1)
--------->
At4g35610
<------
ZmHOX2a(2)
<---------
At4g35610
--------->
ANAC46
<---------
ARR14(3)
>>>>>>>
GRF7
----------->
HVH21
------>
MYB46(1)
--------->
ARR11(3)
<-----------
RAV1(2)
<---------
WOX13(1)
--------->
TOE1(2)
<---------
ARR11(3)
<---------
MYB52(1)
--------->
ATHB12
--------->
YAB1
<------
ZmHOX2a(2)
<--
<-----------
HVH21
--------->
ICU4
<---------
YAB1
--------->
GLK1(1)
-------
tacatcatccagactgtcaggtttcttctcaccataagcagtgattgacacctcaccatgataacctacaaatcacagagatcgagatctctgggcatgg
20631200
--------->
HSFB2a(2)
<---------
HSFB2a(2)
----------->
GT1
<------
ZmHOX2a(2)
<---------
ARR14(2)
<---------
LBD16
-
AtLEC2
--------->
ARR11(3)
<-----------
GT1
---------->
DOF2
-------
MYB46(3)
----------->
GT1
<---------
YAB1
---------->
DOF2
<---------
AHL20(2)
-->
ALFIN1
--------->
GLK1(1)
<---------
ATHB12
--------->
At5g28300
tggtttcgacggagatcgagaaaacagaaaattagatttagaagtaagaggcctatcaatgttttacatttaagcacagtaaacatttaaagcccagcct
20631300
<---------
YAB1
<---------
AHL20(2)
<---------
ICU4
-------->
ATHB1
-------->
HAHB4
<--------
HAHB4
--------->
ATHB51
--------->
YAB1
--------->
ICU4
<---------
ATHB51
<---------
YAB1
------->
GAMYB
<-------
GAMYB
------------>
CBF
<---------
MYB46(3)
--------->
ANAC58
----------->
GT1
--------->
ANAC58
<-------
GAMYB
---------->
DOF2
<---
<---------
MYB52(1)
--------->
AtMYB61
----
--------->
MYB59
--------->
MYB52(1)
--------->
ANAC58
--------->
MYB52(1)
>>>>>>>>>
GT-1
<---------
ARR14(2)
--------->
MYB46(3)
--------->
ANAC58
<---------
ATHB12
----------->
GT1
--------->
ARR14(2)
<-----------
GT1
--------->
ANAC46
--------->
MYB46(3)
agcccattaagaggtaaatctaatttgctacgaattcggttgttaattattaaaccatcggtttagttcatcaaacgcaaaccaaagccaataaccgaat
20631400
<----------
DOF2
--------->
YAB1
<---------
DEAR3(1)
<------
MYB83
<---------
ICU4
<---------
AHL20(2)
------->
GAMYB
--------->
ICU4
<---------
RVE1(1)
<<<<<<<
GRF7
--------->
ALFIN1
<---------
ARR14(2)
--------->
AHL20(2)
<---------
CCA1(1)
------>
ZmHOX2a(1)
<------
NtERF2
<---------
HSFB2a(2)
--------->
ARR11(3)
----------->
RAV1(2)
--------->
LBD16
--------->
HSFB2a(2)
<---------
GLK1(2)
<---------
GLK1(2)
<------
MYB46(1)
<---------
LBD16
<---------
HSFB2a(2)
<---------
LBD16
--------->
RAP2.6(3)
<---------
AtMYB61
<---------
ANAC46
--------->
HSFB2a(2)
*
TSS
<---------
ARR11(3)
<---------
At4g35610
--------->
DAG2
------
ICU4
--------->
YAB1
--------->
LBD16
<-----------
GT1
----------->
HVH21
---------->
DOF2
----->
ATHB51
--------->
AHL20(1)
----------->
ARR10
------>
NtERF2
--------->
MYB52(1)
--------->
ALFIN1
<
aatttctcgagaaaaaataat
gactttccggtgaagatttttttttacgacggcttctcctgacaacggaaggtgttgagaaagtggcggaatttgattt
20631500
--------->
GLK1(1)
<---------
RVE1(1)
<---------
GLK1(2)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
<------
ZmHOX2a(2)
--------->
CCA1(2)
--------->
ARR11(3)
--------->
ARR14(2)
--------->
AGP1
<---------
ARR14(2)
------>
ZmHOX2a(1)
--------->
GLK1(1)
<---------
CCA1(2)
<---------
ANAC58
<---
===================================
HOX2a_HOX2a
<------
------>
ZmHOX2a(1)
<---------
ANAC58
<---------
GLK1(1)
------>
ZmHOX2a(1)
<---------
ANAC46
<---------
AHL20(2)
--------->
ATHB12
-----------
GT1
<---------
ARR11(3)
--------->
LBD16
----------->
GT1
<---------
WOX13(1)
tgtttcctctcctctcctatctaaacaag
gtctgttttcgtgagatccagatattcaatttggattcaaaatcgtgaattgggttttggattgatttctg
20631600
<------
ZmHOX2a(2)
--------->
ATHB12
<---------
ARR11(3)
<
<---------
YAB1
--------->
ARR11(3)
<-
------>
ZmHOX2a(2)
--------->
ICU4
--------->
GLK1(1)
<-
<----------
DOF2
--------->
YAB1
--------->
MYB52(1)
---
<---------
ZAT18
<-----------
GT1
--------->
ANAC58
--------->
LBD16
------
MYB52(1)
--------->
At4g35610
--------->
ARR14(2)
--------->
ANAC58
<---------
ANAC46
-----------
AGL2
<---------
At4g35610
<-----------
HVH21
<---------
KAN4(2)
<---------
LBD16
ttactggtctgtgtgctttgatctgaatgttgtttcattctctag
ttgtcagatttactg
atgatgggaataagcaaaacggagatcaatttgcggagat
20631700
--------->
ANAC58
--------->
MYB52(1)
------>
MYB83
------>
MYB46(1)
--------->
MYB55(1)
--------->
AtMYB61
<---------
MYB111(2)
<---------
MYB46(2)
<---------
MYB52(2)
<---------
MYB111(1)
<---------
MYB59
<---------
At4g35610
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
------->
TEIL
<---------
ALFIN1
--------->
ZAT14
------->
TEIL
<---------
ZAT14
<-------
TEIL
--------->
LBD16
------->
TEIL
<---------
YAB1
--------->
At4g35610
<---------------
AtSPL8
<---------
At4g35610
<---------------
AtSPL3
--------->
AHL20(2)
<------
----------
DOF2
--------->
ANAC58
<---------
AtLEC2
------>
ZmHOX2a(2)
<-------
--------
ANAC58
--------->
MYB46(3)
<---------
YAB1
--------->
ARR11(3)
<---------
ANAC46
--------
ANAC58
-------->
P
--------->
HSFC1(2)
<---------
ARR11(3)
<---------
ANAC58
-------------------->
TaNAC69(2)
<---------
HSFC1(2)
<----------
DOF2
<---------
ANAC58
tgctttccgctgcacctaaccagcaaaatcagtcgaagcttatgcat
gtacgtttcttttgatcttcattatatgtaaactattagtctcgtgtttatgt
20631800
--------------->
AGL15
<-----------
RAV1(1)
--------->
ZAT14
<---------
ZAT14
--------->
At4g35610
--------->
GLK1(2)
<---------
TOE1(2)
--------->
ARR11(3)
<---------
TOE2(2)
<---------
ARR11(3)
----------->
HVH21
--------->
ARR14(2)
<---------
LBD16
--------->
LBD16
-----
RAV1(1)
<---------
ARR14(2)
--------->
YAB1
----------->
RAV1(2)
<--
--
TOE2(3)
--------->
RVE1(1)
<---------------
AGL15
--------->
LBD16
<-----------
RAV1(2)
tgatgtatgaaacaaaaaatctgcag
tatgttgctacattgagggaacaattagaacaactctccgaagaaaaaacccctgaaggccttcccag
gtttac
20631900
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AGI:
At3g55600.1
Description:
similar to cation exchanger, putative (CAX10) [Arabidopsis thaliana] (TAIR:AT1G54110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43197.1); contains domain PD119426 (PD119426)
Range:
from: 20631422
to: 20633449
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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