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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ARR11(3)
<---------
ARR11(3)
<----------
DOF2
<---------
ZAT2
<--------
<----------
DOF2
<---------
At4g35610
--------->
HSFB2a(2)
<---------
HSFB2a(2)
-----
<---------
HSFB2a(2)
--------->
HSFB2a(2)
------
--------->
ANAC46
<---------
AtMYB61
<---------
DAG2
--------->
ZAT2
<--------
---->
GT1
<---------
TOE1(2)
<---------
RAP2.6(2)
--------->
At4g35610
ttaaaacccacaatgagcgagtaaaccaagtcttctctcg
tatggtcgaggtcgagaattgcgacctttttttgttctcgagcagcctttgcagatattt
20574800
--------->
YAB1
--------->
ICU4
<-----------
HVH21
<---------
ICU4
---------->
DOF2
--------->
YAB1
<------
ZmHOX2a(1)
--------->
ICU4
--------->
MYB59
--------->
ANAC58
-----
AHL20(2)
--------->
ANAC58
-
RVE1(1)
--------->
HSFC1(1)
<---------
ANAC58
---->
AHL20(2)
<---------
ICU4
--------->
HSFB2a(2)
<---------
ANAC58
--->
AHL20(2)
<---------
GLK1(2)
<---------
HSFB2a(2)
--------->
ATHB12
-
CCA1(1)
--------->
MYB59
---------->
DOF2
<---------
HSFC1(1)
<---------
AHL20(2)
-
aattaggaaagtcaggtctaagaatttctgagaagaagagaataaaaagactcattcatctagaagaagccataatgatgttttattgggtctgttttga
20574900
<---------
ANAC46
<-------
TEIL
<---------
ANAC58
<---------
ANAC58
--------->
ATHB12
xxxxxxxxxxxxxxxxxxxxx
<---------
AHL20(2)
<----------
DOF2
--------->
MYB52(1)
--------->
AHL20(2)
--------->
ANAC46
------>
ZmHOX2a(1)
<---------
YAB1
--------->
ANAC58
--------->
TOE1(3)
<--
--------->
DOF2
<----------
DOF2
--------->
ANAC58
--------->
TOE2(3)
----------->
GT1
tcaaaagtccaaagacttctacttttaattgggttcgtatacatttttcaagcagccaagagtctttccttaaactaagtaagggtaagatggtcatttt
20575000
<------
MYB46(1)
-------->
HAHB4
<---------
ICU4
--------->
YAB1
--------->
ANAC55(2)
<---------
ANAC58
<---------
ANAC55(2)
<---------
ANAC55(1)
<---------
ANAC46
--------->
ANAC58
--------->
ANAC58
<---------
ANAC58
<<<<<<<<<<
MYB80
--------->
ANAC55(1)
<------
MYB46(1)
<---------
WRKY18(1)
<---------
MYB52(1)
<---------
AtMYB61
--------->
WRKY38(1)
<-----------
HVH21
<------
MYB83
<---------
TOE1(2)
--------->
WRKY45
----------->
RAV1(2)
--------->
MYB59
<---------
TOE2(2)
--------->
WRKY12
------>
NtERF2
<---------
ATHB51
<----------
--------->
MYB52(2)
<-----------
GT1
--------->
ICU4
<------
MYB83
--------->
O2
<---
x>
smallRNA(le3)
<---------
TOE2(3)
----------->
GT1
--------->
MYB59
--------->
ANAC46
-------
At4g35610
<----------
DOF2
------>
ZmHOX2a(1)
<---------
AtMYB61
--------->
MYB46(3)
agcttagttgaccagacttataaactttaggttttgcctcctgttacgtaataatggtttggtttggtttgatcaagtcttggaaccacgacgcaggtta
20575100
----------->
HVH21
--------->
YAB1
----------->
GT1
<---------
ANAC55(2)
---------->
DOF2
--------->
YAB1
--------->
ICU4
<---------
ANAC58
--------->
YAB1
<---------
ICU4
<---------
ANAC58
--------->
AHL20(2)
------------------------>
ANAC81
--------->
ICU4
<---------
ANAC58
<---------
AHL20(2)
-
RAV1(2)
----------->
GT1
<---------
ATHB12
---------->
DOF2
<---------
ANAC58
<----------
DOF2
------
YAB1
---------->
DOF2
--------->
YAB1
<---------
ANAC46
<---------
ANAC46
<-----------
TBP
------
tgtttgaaaattgaaaaagagtaaataagaatagtaaaaaatcattatgtgaacgagaaagtctgcgtgttcttgcttctgtatttaaagactttgtctg
20575200
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<<<<<<<<<
TBF1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ATHB12
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
*
TSS
<<<<<<<<<
TBF1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
------------>
CBF
<<<<<<<<<
TBF1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
ANAC46
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
bZIP60(2)
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
<<<<<<<<<
TBF1
<----------
DOF2
<---------
ALFIN1
<----------
DOF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<----------
DOF2
----->
HVH21
--------->
WOX13(1)
------>
ZmHOX2a(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
----------
acacatccacttc
atcaatcgtttctctttctccttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctttttctttagaaacaacaca
20575300
--------->
ZAT14
<--------
P
<---------
ZAT14
<---------
TOE2(3)
<---------
ARR11(3)
--------->
ZAT6
<-------
GAMYB
<---------
TOE1(3)
--------->
ARR11(3)
<-------
--------->
TOE2(3)
--------->
MYB55(2)
---------->
DOF2
<-------
->
RAV1(1)
<-----------
GT1
<---------
MYB46(3)
--------->
ATHB12
--------->
ZAT18
aaccccaaaaacttaaaaaataactctacagag
atggctgttggaatccttgaggttagtctgatcagtggcaaaggtctcaagcgctctgattttcttg
20575400
--------->
YAB1
------>
ZmHOX2a(1)
--------->
ARR14(2)
<---------
ARR14(2)
------>
ZmHOX2a(2)
<---------
ARR11(1)
==================================
HOX2a_HOX2a
--------->
ARR11(3)
<---------
CCA1(2)
<---------
ARR11(3)
<---------
ANAC58
>>>>>>>>>
ARR2
<---------
ICU4
<---------
ANAC46
<---------
ANAC58
<------
MYB46(1)
--------->
YAB1
<---------
ANAC55(2)
<----------
DOF2
<---------
ANAC58
<------
MYB83
--------->
ICU4
--------->
ANAC55(2)
<-----------
GT1
<<<<<<<<<<
GT-3b
>>>>>>>>>
ARR1
--
ANAC58
<---------
ANAC58
<---------
AHL20(2)
--------->
AHL20(2)
--------->
ATHB12
--
ANAC58
--------->
GLK1(1)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
gtaatgatctctctattctctcagatttcgtatcctttgatcatttaaaaaacccttttacaacaatttatatttttcttggttttgtatgattgtag
gt
20575500
--------->
CCA1(2)
--------->
LBD16
<------
ZmHOX2a(2)
--------->
ANAC46
<---------
ANAC58
<---------
ARR11(3)
--------->
ANAC58
<---------
ANAC58
<-------
TEIL
--------->
ARR11(3)
--------->
ANAC58
<---------
STY1(2)
<------
ZmHOX2a(2)
<---------
LBD16
<-----------
GT1
<---------
ARR11(3)
--------->
ARR14(2)
<---------
AHL20(2)
<----------
DOF2
--------->
AGP1
--------->
AGP1
<---------
ARR14(2)
---------->
DOF2
--------->
STY1(2)
--------->
ARR11(3)
---------->
DOF2
---------->
DOF2
----------->
GT1
<-----------
GT1
<
aagatagatccatatgttgagatccaatacaaagggcaaacccgcaaaagcagcgttgctaaag
gtaatttaacttgctagtttccttctttccatattt
20575600
<-----------
GT1
<---------
ANAC58
<---------
ANAC58
--------->
At4g35610
<----------
DOF2
<----------
DOF2
<---------
At4g35610
<---------
DAG2
<---------
ICU4
---------
CCA1(2)
<---------
ANAC46
---------->
ID1
<---------
YAB1
<--
ccaaatctctatcagcttaattcgggttatttcgtttgactttttttttcgttttatgcgagagagactatttctccaatttcatcattttcttttctat
20575700
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AGI:
At3g55460.1
Description:
SCL30 (SC35-like splicing factor 30); RNA binding. similar to SCL30a (SC35-like splicing factor 30a), RNA binding [Arabidopsis thaliana] (TAIR:AT3G13570.1); similar to pre-mRNA splicing factor [Oryza sativa (japonica cultivar-group)] (GB:BAC78592.1); similar to hypothetical protein OsI_037556 [Oryza sativa (indica cultivar-group)] (GB:EAY83597.1); similar to Os12g0572400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067091.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:
from: 20571785
to: 20574740
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At3g55470.1
Description:
C2 domain-containing protein. similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G63220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69195.1); contains InterPro domain C2 calcium-dependent membrane targeting (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973)
Range:
from: 20575214
to: 20577307
Orientation: Forward
Links:
TAIR
MIPS
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when using AthaMap.
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