Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                      ----------->RAV1(2)                              <---------At4g35610                        <---------ANAC58                        <---------ANAC58                                                            <                      <-----------GT1                                    <---------ICU4             -                 <----------DOF2 <---------At4g35610               --------->ANAC58                 <         --------->ANAC58     --------->At4g35610                  --------->ANAC58               ---         --------->ANAC58<----------DOF2            <---------ICU4 --------->ANAC46    <---------ZAT6 -------HVH21    ------>ZmHOX2a(1)  --------->At4g35610     <---------ICU4  ----------->GT1      ----   tcagagacagcaaggaatccttttttgctttctgcagcaactgagccatatcaaacatttcaaaattacacacaaaaattgcaaaattagtgacaaacaa  20525900                                            --------->ANAC46                                          --------->TOE1(2)                                       --------->ARR11(3)                                       --------->AGP1                     <---------At4g35610--------->CCA1(2)                     --------->At4g35610<------ZmHOX2a(2)         --------->ANAC55(2)           <---------ARR11(3)        <-----------GT1 ----------->HVH21 ---------------AtSPL3                --------->GLK1(1)     ------>MYB83   <---------O2 -------------->AtSPL8              --------->YAB1          ------>MYB46(1)<---------TGA1a ---------------AtSPL8        --------->ANAC58      --------->MYB46(3)     --------->TGA1a ------>DAG2  <---------YAB1  --------->ANAC46      --------->REM1(1)      --------->O2 ------>DOF2--------->YAB1    --------->ANAC58    ----------->RAV1(1)  --------->YAB1              --   aaagggtacttacatgataatggagctctactaagcaatgagatccaaggagcaacaacaccaaatgttacaatcagacgtctctgacatttatctgaaa  20526000                                                       ------>ZmHOX2a(1)                                                      --------->TOE2(3)                                                   <-----------GT1                                               <---------MYB52(1)                                            <-------TEIL                                           --------->ARR14(1)                                   -----                                          --------->ARR11(1)                                    -----                                          <---------GLK1(2)                                     ----- --------->ANAC58                         <---------ARR14(2)                                    <---- --------->ANAC58        ---------->DOF2  --------->ARR14(2)                                    ----- ----------->GT1       <---------YAB1    <---------HSFB2a(1)   --------->At4g35610              ----- ------->MYB52(1)  <----------DOF2      ----------->ARR10   ---------->DOF2 ----------->GT1--------->ARR14(2)   aaaacgaaataaaaacacaaactttataaaagggtttgaagaaagattcgttttttcctcagagaagcagaatatagagagtaatttgaatcggaaacac  20526100                                                                                                   --                                                                                                   --                                                     --------------->AGL15                         --     <----------ID1                                  <---------------AGL15                       ----   ---------->DOF2                                   <----------DOF2                             <--- ---->ANAC55(2)                               <---------ZAT14             <----------DOF2        ---- ---->ANAC58                                  --------->ZAT14             ------>ZmHOX2a(1)      <--- ---->ANAC55(1)                               --------->ZAT18      ---------->DOF2               ---- -----ANAC55(2)             >>>>>>>>>TBF1 --------->ALFIN1  --------->ANAC58                     <--- ---->ANAC46 --------->TOE1(3)            <---------AtMYB61 --------->ANAC46                  ------- ---->ANAC58 --------->TOE2(3)         <------ZmHOX2a(1)    --------->ANAC58        <------ZmHOX2a(1)   gtaagaaaagacaaaccttgaagatgagaagaagaagacgaggaatggtgctctgcttttacaagaaatgaaagtcctttcttagaggaaggaatcacac  20526200 --------->TOE2(3) --------->TOE1(3) ------>P                                                                                <-----------RAV1(1) ---->MYB46(1)                                                                       ------>ZmHOX2a(2) ---->MYB83                                                                         <---------RVE1(1) ----->DEAR3(1)                                                                     <------ZmHOX2a(2) ------MYB111(2)                                                                   --------->AGP1 ----->AtMYB61                              <<<<<<<<<<<<<<<<<LFY                   <---------AGP1 ------MYB46(2)                            --------->ANAC58           <---------ANAC46<----------DOF2 ----->MYB46(3)                            --------->ANAC58 ----------->GT1        --------->ARR11(3) ------MYB111(1)              ---------->DOF2            --------->DAG2            <---------ARR11(3) -->ANAC46                ----------->GT1---------->DOF2---------->DOF2      <---------ZAT6----------   caaccttagaaatggagattggagaagaaggtgaaagcttcagagaagccattggagaaaaagtgtaatatgtggtatagagatagatcttttgttgtct  20526300                                              ----------->HVH21                                              ------>ZmHOX2a(1)                                        --------->HSFC1(2)                                        <---------HSFC1(2)                <----------DOF2  <---------DAG2              <-----------HVH21          <-----------GT1   *TSS <----------DOF2   <----------DOF2              --------->ZAT6 >ID1  --------->ARR14(2)  <-----------GT1  ----------->RAV1(2)     <----------ID1            <------   tctcttatggattcacttctttctcagtttatccacttttgaaacttcctgaccttttaaaaatgtcagagagacaaaaaaaacactaatttgcaaaaat  20526400                      <---------AtLEC2                 <---------ICU4               --------->ARR11(3)               <---------ARR11(3)              --------->ANAC58             <---------AHL20(2)                --------->ANAC58         --------->TOE2(3)       -----          --------->YAB1                 --------->MYB46(3)   <---------ANAC58           <------ZmHOX2a(1) ---ICU4--------->AHL20(2)<---------ARR11(3) ---------->DOF2  <---------ANAC58         <---------TOE2(3)   ggcccttcaaaataataaatctttgcaagataacaaaaatgtaaccaaaacgcacagtttcaatgggtgttttacataaatatacaaattaggatgaaca  20526500                                                                                <------MYB83                                                                                <------MYB46(1)                                                                               --------->MYB111(2)                                                                       ----------------->AGL3                       --------->ZAT6                                ------>NtERF2          <--------                     <-----------GT1                --------->YAB1  <---------ATERF1(1) --------->YAB1                <----------DOF2            ---------->DOF2        <---------LBD16  ----------->GT1 ------>GT1   <----------DOF2           <---------YAB1 <---------AHL20(2)      <---------AtMYB61 ----   gttaaacattttggggctctttgttacagtagtagacgttttatgaaaagcccataataaatctgaagcccggcccatatgtaggtggtatcaaaatcat  20526600                                                                                         --------->CCA1(2)                                                                                        --------->ARR11(3)                                                                                        <---------ARR11(3)                                                                                        --------->ARR11(1)                                                                              <---------ARR14(2)                                                                 <---------At4g35610    --------->ARR14(2)        <----------DOF2                           <---------At4g35610         --------->ARR14(2)    <---------TOE1(3)                         --------->ALFIN1   --------->At4g35610    <---------ARR14(2)    <---------TOE2(3)                 <---------ZAT14           --------->GLK1(2)     ----------->ARR10 -ARR11(3)                            --------->ZAT14  <---------ETT(2)      <------ZmHOX2a(1) -------->CBF           *TSS<---------RAP2.6(2)   --------->At4g35610  <---------At4g35610          <   ccaattagggttttatgttttttgtttttggcggtctcagtgaagaagatggtgctgtcgaacaagaagctgaagcagaggattcgacaagatttggctg  20526700                           --------->ARR14(2)                           <---------ARR14(2)                    --------->LBD16                                               <---------ARR14(2)                   --------->ANAC46                                               --------->ARR14(2)                ------->TEIL                                                      <---------GLK1(2)                --------->ARR14(2)                                       <---------MYB52(2)                <---------ARR14(2)  --------->TOE2(3)                    <---------ALFIN1 -----------GT1<---------CCA1(2) <---------GLK1(2)            <-------TEIL--------->AtMYB61   aatcactatctgtctctgtatccgaaacaaatccacaatctcagtctctgaaattgctccttgattcatctagccacaaacccagattgtcgaagagaga  20526800  Previous    Next  AGI:  At3g55330.1    Description:  PPL1 (PSBP-LIKE PROTEIN 1); calcium ion binding. Identical to PsbP-related thylakoid lumenal protein 2, chloroplast precursor [Arabidopsis Thaliana] (GB:P82538); similar to PPL2 (PSBP-LIKE PROTEIN 2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G39470.2); similar to PPL2 (PSBP-LIKE PROTEIN 2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G39470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69262.1); contains InterPro domain Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); contains InterPro domain Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); contains InterPro domain Photosystem II Range:  from: 20524802    to: 20526328    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g55340.1    Description:  RNA recognition motif (RRM)-containing protein. similar to 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative [Arabidopsis thaliana] (TAIR:AT2G35410.1); similar to hypothetical protein OsI_017529 [Oryza sativa (indica cultivar-group)] (GB:EAY96296.1); similar to Os05g0114500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054461.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 20526624    to: 20529036    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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