Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <---------ARR14(2)                --------->ARR14(2)             ------>ZmHOX2a(2)            <------ZmHOX2a(2)           <---------ARR11(3)           --------->ARR11(3)         ----------->ARR10                <---------ANAC55(2)     --------->ANAC46                   <-----------GT1     --------->ANAC58         <---------------AtSPL8                          <---------YAB1     --------->ANAC58         --------------->AtSPL8                --------->YAB1 <---------At4g35610 -------->WOX13(1)     <---------At4g35610--------->ANAC55(2)      <---------YAB1  --------->At4g35610 ----ZmHOX2a(2)------>ZmHOX2a(1)  <-------TEIL              --------->YAB1  --------->YAB1   <------- --ARR11(3)<---------ARR14(2)--------->AHL20(2)             -------->HAHB4 <---------YAB1 --------->ATHB51 ->ARR11(3)--------->ARR14(2)<---------AHL20(2)        <---------YAB1 <---------YAB1      --------->AHL20(2)   atccatcacgctagatcctatctgtagctaattaagtacatattacatgatcaaattctaaatgatggtatcataatatgatgatagctccataatttat  20485300                                                                   ----------->GT1                                                                  --------->DAG2                                                                ---------->DOF2                                                             <---------ANAC46                                            <---------ANAC58 <---------ANAC55(2)              <---------MYB52(1)            <---------ANAC46 --------->ANAC55(2)      --------->AHL20(2)              <---------YAB1       --------->MYB52(1)      ---------->DOF2      <---------AHL20(2)            --------->CCA1(2)   <---------ICU4          --------->AHL20(2)  <---------AHL20(2)               --------->ARR14(2)   <------ZmHOX2a(1) ----------->GT1  --------->AHL20(2)       <---------------AtSPL8      --------->ICU4    --------->DAG2  <---------YAB1       <-------TEIL<---------ARR14(2) <---------TOE2(3) ---------->DOF2  <------ZmHOX2a(1) --AHL20(2)  <-----------HVH21 <-------TEIL <---------ANAC58<---------LBD16     <---------AHL20(2)   acatataattaatcccgttagagagtacataggtacagatatgtttgtgtgtttataaggattacggaaaggtaaaaagtattaaaaaagaggagagaga  20485400                                      <---------YAB1                                      --------->ICU4                                <------ZmHOX2a(1)         --------->At4g35610                             <-----------RAV1(2)          <---------At4g35610                          --------->bZIP60(1)            <---------ARR11(3)<----------DOF2       <---                          <---------YAB1    <---------ANAC58       <---------ALFIN1         <------ZmHOX2a(2)                          <---------bZIP60(1)            --------->ARR11(3)--------------------->WRI1        --------->AHL20(2)----------->HVH21 <---------AtLEC2     --------->ANAC46          <---------ARR11(3)    <------ZmHOX2a(1)  --------->ALFIN1     <---------ANAC58     <---------ALFIN1          --------->ARR11(3)   gagagaggaattaaaaccagtagaggtgatgacaggagtgatgtttgcatgcttagagagagcttccacacactcttctttgctcatatggaagatcaaa  20485500                                                              --------->TOE2(3)                                                             --------->ANAC55(1)                                                             --------->ANAC55(2)                                                             <---------ANAC55(2)                                                             --------->ANAC46                                                             --------->ANAC58                  ------->TEIL                               --------->ANAC58                 <---------ALFIN1                       <-------TEIL             --------->At4g35610                    <---------TOE2(3)                   --------->YAB1            <-----------RAV1(1)               --------->ARR11(3)                     ----------------            --------->ALFIN1                  <---------ARR11(3)    ----------->GT1<------ZmHOX2a(2)           ------->MYC3            --------->ANAC46 <---------------AtSPL8         <---------YAB1  <-        --------->YAB1          <-------TEIL  --------->AHL20(1) ---------->DOF2  --------->ARR11(3)- ------ICU4<-------MYC3     <-------TEIL     --------->YAB1 <-------TEIL          <---------ARR11(3)<   catttctctatcatgtgctgcacctatacatacatacacacatccaaagatattgaggtacatacgtaaaagataaatagataagatcattcatagaatc  20485600                                    <---------AHL20(2)                 --------->At4g35610     <------NtERF2                 --------->YAB1                     --------->GLK1(2)    --------->LBD16              <---------AHL20(1)                   <---------ARR14(2)    <------NtERF2    <-------TEIL--------->AHL20(2)                   --------->ARR14(2)  <---------LBD16   --------->GLK1(2)                                <---------GLK1(2) ----->WRI1 <-------TEIL         --------->AHL20(1)               >>>>>>>>>TBF1          <---------GLK1(1) --------DEAR3(1)   <---------ARR14(2)                        --------->At4g35610        --------->GLK1(1) ----->NtERF2       --------->ARR11(3)                <XXXXXXXXXXXXXXXXXXXXMIR838<---------YAB1 ---------SPL7      --------->ARR14(2)  <-----------GT1    --------->At4g35610  --------->TOE2(3)   gacggccggagaagtacatgaggttcttgaatcaatataatattaccatgtgaatgtaagaagcagaagaagaatctgccattgttaatggaaaccctag  20485700                                         --------->O2                           --------->ANAC55(2)                                         <---------O2                           --------->ANAC46                                         --------->TGA1a                        <---------ANAC55(2)                                         <---------TGA1a                        --------->ANAC58                                         ======================bZIP_DOF         --------->AtLEC2                                        *TSS                                    --------->ANAC55(1)                                    --------->ANAC58                         ========================                                    --------->ANAC58                         <------ZmHOX2a(2)               ---------->DOF2      --------->ANAC46                        <---------ARR11(3)               ====================================bZIP_DOF    <-----------TBP  --------->ANAC58           --------->TOE2(3)      ---------->DOF2            <---------------AGL15     --------->ANAC46             =================bZIP_DOF  --------------->AGL15     --------->ANAC58           --------->HSFB2a(2)         ----------------->AGL3     --------->ANAC58           <---------HSFB2a(2)         ----------------->AGL2    ===============================================MYC_MYB  <-----------------AGL3                 <-    ------->GAMYB           =======================bZIP_DOF <-----------------AGL2   ---------->DOF2 <-----------GT1            <----------DOF2         ---------->DOF2         --------->ARR11(3)    <--   aattaacacccaaacttaaaagagagtcttctttctaaaagccacttgtggagataaagacagccatatatagaagaagatcacgcaaaaagatgaagaa  20485800                                                         --------->ALFIN1                                                        <-------MYC2                                                        ------->MYC4                                                        <-------MYC3                                                        ------->PIF5                                                        <-------PIF5                                                        ------->MYC3                                                        ------->MYC2                                                       --------->PIF3(3)                                                       <---------PIF3(3)                                                       <---------TGA1a                                                       --------->O2                                                --------->ANAC58                                              --------->At4g35610                                            <-----------RAV1(2)           <---------WOX13(1)                                          ------>NtERF2<---------O2     <---------ICU4                                         <---------PCF2=======================================bZIP_DOF                                         <---------PCF5--------->TGA1a  --------->ATHB51                                         --------->TCP20<-------MYC4   --------->ICU4                                    <---------AtLEC2 <---------ALFIN1  <---------YAB1             <--        ----------->GT1            >>>>>>>>>>ABI3    <-----------RAV1(2)--------->ATHB12        -----    ---------->DOF2                >>>>>>>>>>FUS3   ---------------->PIF3(2)                   <----- ====HOX2a_HOX2a                   <<<<<<<<<<FUS3 --------->PCF2     --------->YAB1    <------ZmHOX2a(1) ---------ID1               --------->CCA1(2) <---------At4g35610   <---------YAB1    --------->ICU4 ----ZmHOX2a(1)----------->GT1  <---------AtLEC2--------->ANAC58<---------WOX13(1) ---------->DOF2---   ggagacaaaagagtgaatagttgaaagatgatatgcatgcatggggccagaagccccacgtgggagattgatcataattggctgagaaaggattagagga  20485900                                                                 ----------->HVH21                                                                <-------MYC3                                                                ------->MYC3                                                                <-------MYC2                                                                ------->MYC2                                                                <-------PIF5                                                                ------->PIF5                                                               --------->ANAC55(2)                                                               --------->ANAC46                                                               --------->TGA1a                                                               <---------O2                                                               --------->O2                                                               <---------TGA1a                                                               --------->bZIP60(2)                                                             <------------OsbHLH66                                                             <---------ALFIN1                                                           ------>ZmHOX2a(1)                                                           =================HOX2a_HOX2a                                                          --------->ANAC46                                                       --------->ARR14(2)                                                       ------->TEIL                                                       <---------ARR14(2)                                                    --------->ANAC55(1)                                                    --------->ANAC55(2)         <-----------GT1                            --------->ANAC46 ----------->GT1                                    --------->ANAC58          <---------ALFIN1 -------ARR14(2)                                 ----------->HVH21           <------NtERF2 ------>ARR10 <----------DOF2        <-----------GT1<---------ANAC55(2)    --------->PCF2 -ZmHOX2a(1)<---------DAG2       <---------MYB52(1) --------->ANAC58       --------->PCF5 ------>ARR14(2)             <---------MYB52(1)<---------At4g35610   ------>ZmHOX2a(2)   gatttgtaaaatcactctttctctcttctcccttcgttttttcatttccatctcacgcatcctccacgtgatccatggcccctctctctctatacatttt  20486000                                                <---------AHL20(2)                                        --------->HSFB2a(2)                                        <---------HSFC1(1)                                        --------->HSFC1(1)                    --------------->AGL15                              --------->TOE2(3)--------->AHL20(2)             <---------------AGL15 <                       <---------AHL20(2)      <---------AHL20(2)          <-----------GT1         --                <---------ANAC58        <---------HSFB2a(2)         <---------TOE2(3)           -----                <---------ANAC58  <---------ARR11(3)                <---------TOE1(3)        --------   ctgcaaaaaaacacttagtcgtgttttaatttccataatcttctagaaattaaatctatacctatttgttaatgttttaacttatataagaaaatgaaag  20486100                             <---------ANAC55(2)                        <---------ICU4                        --------->ATHB12                                                           <-                       <---------YAB1                                        <----------DOF2       --                       --------->ICU4                                        --------->TOE2(3)    --- -------GAMYB         <-------MYC3                    <---------LBD16 <---------WOX13(1)      ------- ------->MYB52(2) --------->ZAT18              ----------->GT1    <---------TOE2(3)           <------ ------->MYB.PH3(2)   ------->MYC3          <---------DOF5.7(2) ---------->DOF2               ------- -->DOF2          <---------ZAT18---------->DOF2  --------->AHL20(2)<------ZmHOX2a(1)  ----------->GT1   ttagttgtattggctctaagagcacatgattacataaaaggagagtaaacgataaattcggaattttaaaggattgatactttaaaaaatggcaaataaa  20486200  Previous    Next  AGI:  At3g55240.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41583.1); contains InterPro domain Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476) Range:  from: 20484518    to: 20485740    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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