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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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       <---------ZAT14
       --------->LBD16
       --------->ZAT14
      --------->DEAR3(1)
     --------->ANAC46
   <---------ALFIN1
   --------->ANAC46
<---------ZAT18
<---------ZAT14
--------->ZAT14
------>DEAR3(1)
---->ZAT14
---->LBD16
>ARR14(2)                                                             ------>MYB83
-ARR14(2)                                                             ------>MYB46(1)           <xxx
 
cagtccacaccgcagagagaatagcaaatggtatgagacttgtgagcctccaagggagaagaaatagttaacctagcagtggtatctctgttcaaaacat  20481500
                                                                   <---------ANAC58
                                                           --------->ANAC58
                           --------->YAB1                  --------->ANAC58
                          <---------ATHB12                 --------->ANAC55(2)
                        --------->WOX13(1)            ------->GAMYB----------->RAV1(2)       <------
                  --------->ANAC58                   --------->MYB46(3)                      <------
                  --------->ANAC58                  --------->At4g35610                -------->P
        <---------At4g35610<---------ICU4 <----------DOF2  <---------ANAC55(2)     <---------HSFB2a(2)
xxxxxxxxxxxxxxxsmallRNA(fl3)  --------->MYB52(1) <------ZmHOX2a(2) <---------ANAC58--------->HSFB2a(2)
 
aaaccaatttctgcttctcacaagctccaatcataacagctcttcctttgggatcaacagccacgtactggcctggcacaattcttctgcaaccagactt  20481600
                                                                       --------->ARR14(2)
                                                                       <---------ARR14(2)
                                                                       ------->TEIL
                                                                       --------->GLK1(2)
                                                                       <---------ARR11(1)
                                                                      <---------ARR14(1)
                                                                      <---------GLK1(2)
                                                                 -------->P
                                                                 ------>MYB83
                                                                 --------->MYB52(1)
                                                                 ------>MYB46(1)
                                                                ------>ZmHOX2a(1)
                                                             <<<<<<<<<ARR1
                                                             <<<<<<<<<ARR1
                 <---------DAG2                              <<<<<<<<<ARR2
       ----------->RAV1(2)                                   <<<<<<<<<ARR2     --------->ZAT18
---------->DOF2  <----------DOF2                        <-----------GT1<-----------ARR10
---ANAC58    <---------ZAT18                            --------->YAB1<---------CCA1(2)
---ANAC58------>ZmHOX2a(1)   <---------GLK1(2)       --------->YAB1 --------->ANAC46            ----
 
gccaaaagtctcctggtgaactttatcgaacacattcttctccttgttgtactcaagtataacaatcctacccgaatctgagcctactacgatataatcc  20481700
                                                                            <---------At5g28300
                                                                           <-----------GT1
              --------->AtMYB61                                          ------>ZmHOX2a(2)
              --------->TOE1(3)                                        <-----------ARR10
              <---------MYB59                                          <---------ARR11(3)
          <---------WRKY38(1)               ------>MYB46(1)            --------->ARR14(2)         --
          <---------WRKY12                  ------>MYB83               <---------ARR14(2)   <-------
         --------->WRKY18(1)             --------->ANAC58              <---------AGP1      ---------
    ----------->RAV1(1)         <---------MYB59                        --------->ARR11(3)-----------
  <---------ZAT18               ------>ZmHOX2a(2)                     <---------CCA1(2)  <------NtERF2
  --------->ZAT18             <---------ARR11(3)                    --------->HSFB2a(2)  <---------SPL7
 --------->ANAC46             --------->ARR11(3)                    <---------HSFB2a(2) <---------DEAR3(2)
<---------At4g35610    <---------ZAT2    --------->ANAC58         ----------->RAV1(2)   <---------HSFB2a(2)
<---------ZAT18        --------->ZAT2 --------->ZAT18         <---------ARR14(2)        --------->HSFB2a(2)
-->ZmHOX2a(1) --------->TOE2(3)<------ZmHOX2a(2)              --------->ARR14(2)     <-----------HVH21
 
ttctgcgcaccagtcaacctaaactgagctagggatctaattgcaccaaatacttctacagagtgtatcgtctggatcttaccgttctcgtcgggacgga  20481800
                                                                                            --------
                                                                                            <-------
                                                                       --------->DEAR3(1)   --------
                                                                     <---------At4g35610    <-------
                                                                     --------->LBD16     --------->ZAT2
                                                                     <---------ZAT18     <---------At4g35610
                                                      <---------HSFB2a(1)                <---------ZAT2
       <-----------ARR10                              --------->HSFB2a(1)                --------->At4g35610
       --------->ARR14(3)                        <------NtERF2      <---------ANAC46    <---------ATERF1(1)
       --------->ARR11(3)                       --------->LBD16    --------->ZAT18      <-----------RAV1(1)
       --------->GLK1(2)                       --------->DEAR3(1)<---------WOX13(1)   <------NtERF2
 --------->CCA1(2)                            <------NtERF2     <---------ANAC58      --------->ATERF1(1)
 <------ZmHOX2a(2)                            <---------LBD16   <---------ANAC58      ----------->RAV1(2)
--------->ARR14(2)    -------->P             ------>NtERF2     <---------MYB46(3)    <---------ATERF1(1)
<---------ARR11(3)    --------->MYB52(1)     --------->LBD16   --------->ATHB12     <---------DEAR3(1)
<---------ARR14(2) --------->At4g35610      --------->ANAC46  --------->WRKY38(1) <---------MYB52(1)
--------->ARR11(3) --------->ZAT2      <---------ANAC58      <---------MYB52(1)   <-----------HVH21
--------->ARR10  ------->PIF5          <---------ANAC58<---------ARR14(2)      <---------LBD16
--ANAC46         <-------PIF5     ------>ZmHOX2a(1)   <---------HSFC1(2)     --------->GLK1(2)
>SPL7  <---------ARR14(3)       ----------->RAV1(2)   --------->HSFC1(2)     --------->ARR14(2)
>HVH21 <---------ARR11(3)--------->LBD16   <---------LBD16  <-------GAMYB    <---------ARR14(2)
 
gaagatccaaaatcttgccacgagctaccgcaatctcctgtgtcttcccgccggagaagttcccgttgattgcgcagacgattccggtcgcctgctgcag  20481900
                                            --------->ANAC58
                                        --------->AtMYB61                  <---------ARR14(2)
                                        ------->GAMYB                      --------->ARR14(2)
                                       <---------MYB55(2)               --------->LBD16
                                       --------->MYB46(3)               --------->ANAC46
                                    --------->MYB46(3)                 --------->LBD16
                            <---------STY1(2)                          ----------------->AGL1
                            --------->STY1(2)                          <---------HSFB2a(2)
     <---------ZAT14       --------->ANAC58 --------->ANAC46          <---------LBD16
     --------->ZAT14--------------->AGL15--------->MYB52(1)        --------->ARR14(2)          <----
->ZAT14      <-------TEIL  --------->ANAC58 --------->ANAC58   <------ZmHOX2a(1)               <----
--ZAT14     --------->CCA1(2)       --------->REM1(1)   <------ZmHOX2a(1)--------->LBD16    <------ZmHOX2a(1)
->At4g35610--------->ARR14(2)  --------->ANAC58  --------->MYB46(3)<---------ARR14(2)     <---------TOE2(3)
--At4g35610<---------ARR14(2)  --------->ANAC58--------->MYB52(1)  --------->GLK1(2)<------ZmHOX2a(1)
 
agtaagactgtacagatacatctctcaaactagcaagctacaaccaccagcaacggctaggatttaggagaatccccgaaactggaaggacttgaggatg  20482000
                               --------->At4g35610
                               <---------At4g35610                 --------->ANAC58
                              --------->ARR14(2)                   --------->ANAC58
                              <---------ARR14(2)     <---------GLK1(2)---------->DOF2
                              ------->TEIL           --------->ARR11(3)                            -
                 --------->ZAT18                     <---------ARR14(2)                           --
                 --------->ZAT14                     --------->ARR14(2)       <-----------GT1   <---
                 <---------ZAT14                     <---------ARR11(3)    <---------KAN4(2)   <----
     <------NtERF2 --------->GLK1(1)        <---------ARR14(2)   --------->MYB52(1)        ---------
--MYB83--------->LBD16  ------>ZmHOX2a(1)   --------->ARR14(2)   <---------ARR14(2)    <---------AHL20(2)
--MYB46(1)       <---------ZAT18        <---------LBD16         <------ZmHOX2a(1)    ----------->TBP
 
gttttggctccgagtttaagtgaactcctagcgcatctgcaacttcggatttggcagattttggtgaggaacggaaagaataaaccctatataatgaatt  20482100
                                                          <---------ICU4
                                                     ------------>CBF
                                                  <---------MYB46(3)
                                                --------->At5g28300
                                                <------NtERF2
                                               ----------->GT1        <----------DOF2
----->NtERF2                            --------->ZAT2    --------->ATHB12
------->ANAC46       <---------LBD16    <---------ZAT2    --------->YAB1                   <--------
------At5g28300    --------->ANAC46  ------>ZmHOX2a(1) --------->WOX13(1)     ------>ZmHOX2a(2)
-------GT1         ----------->HVH21 <---------At4g35610 <---------ATHB12   <---------AGP1 <--------
>AHL20(2) ---------->DOF2   --------->ALFIN1  <---------DEAR3(1) <---------MYB59      ------------>CBF
 
accgccatagctccaaagctctacgacggaagtggtgttcctctgctaggcggtgattcaatcatgggcctaacttttggatctaatatagcaatattgg  20482200
                            --------->YAB1
                         --------->YAB1                                --------->TOE2(3)   ---------
                         <---------ICU4                        --------->YAB1              ---------
                        --------->ICU4                        <---------YAB1               ---------
-ICU4<---------YAB1     <---------ATHB12                    --------->YAB1          --------->ATHB12
----CBF                 <---------ATHB51                  <---------GLK1(2)     --------->DAG2
 
cccatcttattttagatttaagcccaaataatgacaagagtccaagactggttttgtctccgattatcatttttcattaacaaaaattgattacaagaaa  20482300
                                                                                       --------->bZIP60(1)
                                                                                       <---------bZIP60(1)
  <----------DOF2                                                                    --------->ZAT14
  <---------DAG2                                                             <---------AHL20(1)
>ANAC46               --------->ANAC58                                       <---------AHL20(2)
>ANAC58               --------->ANAC58    ----------->GT1                    --------->AHL20(2)
>ANAC58    <---------AtMYB61            ---------->DOF2   --------->YAB1    --------->AHL20(2)
 
ttgaacttttttttttggtggaaacaagaaattgaacttaatataaagataaactatagaatgacaacattttctctcattaaatttgtgaagtcacaaa  20482400
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AGI:  At3g55220.1   
Description:  splicing factor, putative. similar to splicing factor, putative [Arabidopsis thaliana] (TAIR:AT3G55200.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ59379.1); similar to CPSF A subunit, C-terminal; WD40-like [Medicago truncatula] (GB:ABP03867.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41578.1); contains InterPro domain Cleavage and polyadenylation specificity factor, A subunit, C-terminal; (InterPro:IPR004871); contains InterPro domain WD40 repeat (InterPro:IPR001680)
Range:  from: 20477898    to: 20481921    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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