Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->GLK1(2)                                                                            <---------GLK1(2)                                                                        <------ZmHOX2a(2)                                                                    --------->HSFB2a(2)           ----------->GT1                                          <---------HSFB2a(2)      ------>MYB83---------->DOF2                                <-----------GT1      --------->ANAC58                                        --------->AHL20(1)             --------      --------->AtLEC2            --------->MYB46(3)   --------->WOX13(1)--------->YAB1==============      --------->ANAC58 ----------->GT1      <---------ZAT14   <---------ARR11(3)--------->HSFB2a(2)      --------->ANAC46 <----------ID1       --------->ZAT14   <---------AHL20(1)<---------HSFB2a(2)      ------>MYB46(1) ----------->GT1 --------->YAB1  <-------TEIL <---------LBD16     --------------   caaaaaccaagcaaggtaaacaaaggggaaaaatgaacaaacatactacacaaacatccatcaatattttctggatcagaatctagaaacccataaaaag  20246300                                                                                 ----------->GT1                <-----------GT1                                                ---------->DOF2              <---------DAG2                                              <----------DOF2        --------->TOE1(3)                    --------->ANAC58             <---------------AGL15        --------->TOE2(3)<-----------GT1     --------->ANAC58       <---------ARR11(3) -->DOF2<---------MYB59--------->AHL20(2)    --------->ANAC46       --------->ARR11(3) =========================================================================================MADS_MADS --->AGL3     <----------DOF2  <---------ATHB12      ----------->GT1--------->GLK1(2)          ------   atgaacaaaacctaaactttaccaatttaacaaatcatttagaaaacacacaaacaggttacaatacaaaaatcttctttacaaagttaaaaccgaatga  20246400                                                      --------->YAB1                                                     <---------YAB1                                                    --------->ARR11(3)                                                    <---------ARR11(3)                                                   --------->CCA1(1)                                                   --------->RVE1(1)                                            --------->AtLEC2            <---------AHL20(2)     --------->ZAT6   --------->YAB1      <---------ANAC58            <---------YAB1--------->TOE1(2) --->YAB1          --------->YAB1         <---------ANAC58         <---------YAB1   --------->TOE2(2)   aaacttgacactactaatctataaacatgagtatatatagtttttcttgcaaaatatcataaaaacttgattattttttttaaaaacataagatagaaca  20246500                             <---------YAB1                            <---------ARR11(1)                  --------->ZAT18                           <---------CCA1(2)                   --------->ANAC58                          <---------SPL7                       --------->ANAC58                       ------>NtERF2                       --------->AHL20(2)                      --------->ANAC46                 --------->AHL20(2)                 <-----------ARR10           <----------DOF2   --------->ANAC46                     -              --------->ANAC58         <---------ALFIN1<---------AHL20(2)                      ------              --------->ANAC58         --------->ATERF1(1) <---------AHL20(2)           ------>ZmHOX2a(1)              --------->ANAC46      ------>NtERF2  --------->AHL20(2)       ----------->GT1  <-------   atttagtcgagcccatacgaaactacgccgtatcattcggcccagccctttgattaaaaaattaaacgcactgtgagtctgtgaaatctcctcggcttca  20246600                                                                                         <-----------GT1                                                                                  ------>NtERF2                                                                                  --------->LBD16                                                                                 --------->ANAC46                                                                                 --------->ANAC58                                                                                 --------->ANAC58   --------->LBD16                                                               <<<<<<<<<<E2Fa  <---------HSFB2a(2)                                                           >>>>>>>>>>>>E2Fd  --------->HSFB2a(2)                                                           >>>>>>>>>>>>E2Fe <---------LBD16               --------->GLK1(1)                                >>>>>>>>>>>>E2Fc -------->MYB52(1)             <---------GLK1(1)        *TSS                    >>>>>>>>>>>>E2Fb  --- --->REM1(1)             --------->GLK1(2)      --------->ARR11(3)              >>>>>>>>>>>>E2Fa  <-- ---DOF2          --------->CCA1(2)             <---------ARR11(3)              <---------LBD16   ---   acttccggattaaggggaagagatgaaattctgaaatcccttgagagaaagatttgtttcgcctctcaaaacattttcaattcccgccaattttcttctc  20246700                 <---------HSFB2a(2)            --------->HSFB2a(1)           ------>MYB46(1)           ------>MYB83                                                                    <---------ICU4           -------->P                                                          ------>ZmHOX2a(2)          <---------ALFIN1                                                    <------ZmHOX2a(2)         <---------MYB111(2)    <------MYB83                                  --------->GLK1(1)         <---------ALFIN1       <------MYB46(1)                               <---------GLK1(1)       --------->ANAC46         ----------->GT1                              <---------ARR11(3) -----  --------->ARR14(2)    --------->TOE2(3)                                    --------->ARR11(3)<-----  <---------ARR14(2)    --------->TOE1(3)                            ------>MYB46(1)       --------->YAB1 ------>LBD16    --------->HSFC1(1)                                  ------>MYB83         <---------ATHB12 -------HSFB2a(2)<---------HSFC1(1)                                <---------MYB59      --------->WOX13(1) ------>HSFB2a(2)--------->HSFB2a(2)<---------AHL20(2) <----------DOF2       <---------ARR14(3)<-----   cgagaatacccccaaccttctagaaaccctaatttggtttaatttcattctccactactttctctgaaaccaaactcgagatctctcccccaatcatgcc  20246800                        ------>ZmHOX2a(2)                       <------ZmHOX2a(2)                      --------->ARR14(3)                                         ------>ZmHOX2a(1)                      <---------ARR14(3)                                         <----------DOF2                      <---------ARR11(3)                                    <------MYB83                      <---------AGP1                                        <------MYB46(1)                      <---------ARR14(2)                                   <---------MYB46(3)                      --------->ARR11(3)                                   <---------AtMYB61       <-                      --------->ARR14(2)                                   --------->MYB59         --         ----------------->AGL1                                            --------->MYB111(1)    <--        <-----------------AGL1<---------At4g35610                         <--------P  <---------TOE2(3)        ----------------->AGL1<---------ZAT2                             <---------ANAC58         <-- ---->TOE1(2)       ----------->ARR10  ----------->GT1                   <---------ANAC58    <------- ----ANAC58    <---------LBD16--------->ZAT2                            <---------MYB46(3)<---------GLK1(1) ----ANAC58 <-----------HVH21 --------->At4g35610 <---------CCA1(2)     --------->ATHB12  --------->GLK1(1)   tgcgatacaatccccatcggggaagatcttgcagcttgagatggagaatttcaaatcttacaagggtcatcaattggttggtcctttcaaggatttcact  20246900                                                                                                    <                                                                           <---------WRKY12         -                                                                         <-----------HVH21          <             <-----------------AGL1                                  --------->MYB52(1)             <  --------->ATHB12                       --------->ANAC46          <---------SPL7                   -  -------->ATHB1                   ------>MYB83                   <---------ANAC58                 <-  --------->ATHB51        --------->GLK1(2)                       <---------ANAC58          <-------- <---------YAB1  <---------ARR14(2)--------->MYB52(1)          <---------SPL7               <-------- --------->ICU4  --------->ARR14(2)------>MYB46(1)            <---------ANAC58              --------- --------------AGL15      <-----------ARR10                   <---------ANAC58              --------- ------------->AGL15      <---------ARR14(2)                 <------NtERF2--------->WRKY18(1)      == ---------------AGL2--------->HSFB2a(2)  --------->ANAC58  <---------DEAR3(1)       <---------MYB46(3) ---------------AGL3<---------HSFB2a(2)  --------->ANAC58 ------>ZmHOX2a(1)<---------WRKY38(1)   <--- ----GT1    --------->MYB52(1)   <---------MYB59    <-------TEIL <-------TEIL    <---------ANAC46<---   gctattattggtcccaacggttctggcaaatctaacctaatggacgctattagcttcgtcctcggcgttcgtaccggtcaacttcgtggttctcagctta  20247000     <-----------ARR10  ------>ZmHOX2a(2) <------ZmHOX2a(2) ---------ARR11(3) -------->ARR11(3) ---------ARR14(2) -----------ARR10 -------->ARR14(2) -----ZmHOX2a(1)              --------->ANAC46 -At4g35610                   --------->ANAC58 -ZAT2                   ----------->HVH21 >At4g35610            ------>ZmHOX2a(2) >ZAT2       <----------DOF2  --------->ANAC58                                                      < =============================HOX2a_HOX2a                                               ----------->ARR10 ------TOE2(3)       --------->ARR11(3)             <----------DOF2                  <---------ANAC46 ------TOE1(3)     <---------YAB1              ---------->DOF2           --------->At4g35610  <------   aggatcttatctacgcttttgatgatcgtgacaaggaacagagaggtcgtaaagcttttgttcgactcgtttatcagatggacgatggagtagagcttcg  20247100                                                                                         ------>ZmHOX2a(2)                                                                                       --------->ARR11(3)                                                                                  --------->TOE1(2)                                                                                 <---------At4g35610                                                                                 <---------HSFB2a(1)                                                                                 <---------HSFC1(2)                               <---------------AtSPL3                            --------->HSFC1(2)                               <---------------AtSPL8                            --------->At4g35610                        --------->ALFIN1                                         <---------ZAT2                      <---------ZAT2                <-------GAMYB               --------->ANAC58    -                      --------->ZAT2         <---------YAB1                     --------->ANAC58 ----                      <---------MYB46(3)   --------->YAB1                       ----------->ARR10<--- -----------GT1      --------->ALFIN1<---------ANAC46 ----------->GT1  <---------ZAT14 <---------ARR11(3) -TEIL               <---------AtMYB61    ----------->GT1     <---------------------WRI1<------ZmHOX2a(2)   tttcactcgttctattactagcgctggtgggagtgagtaccgtattgataatagggttgtgaatttggatgagtacaatgggaagctacgatctcttggg  20247200  Previous    Next  AGI:  At3g54670.1    Description:  TTN8 (TITAN8); ATP binding. similar to ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3), ATP binding [Arabidopsis thaliana] (TAIR:AT5G48600.1); similar to SMC1 protein [Oryza sativa] (GB:CAD59409.1); similar to hypothetical protein OsI_038021 [Oryza sativa (indica cultivar-group)] (GB:EAY84062.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40626.1); contains InterPro domain RecF/RecN/SMC protein, N-terminal; (InterPro:IPR003395); contains InterPro domain SMCs flexible hinge; (InterPro:IPR010935); contains InterPro domain t-SNARE; (InterPro:IPR010989) Range:  from: 20246656    to: 20254938    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version