Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------At4g35610     <--------P    <---------MYB52(1)   --------->LBD16                       <---------TOE1(2) <---------LBD16                      <---------ANAC46 ----->TEIL                           <---------ANAC58                                              < --------ARR14(2)       <----------DOF2<---------SPL7                                               - ------->ARR14(2) <---------ATHB51    <---------ANAC58  ---------->DOF2                         <---- -->At4g35610    <---------MYB52(1)  ---------->ID1 --------->YAB1                              <----   gaatccggtagatgatgccgataattcttttttttttttgtcgtatgaaaccgataatcaaagactaaaacagggatttttctcatttgtggtcatcact  19894500                                                                        --------->TOE2(3)                                                                <----------DOF2                                                               ------>ZmHOX2a(2)                                                              <---------RVE1(1)                                                              <------ZmHOX2a(2) <---------AHL20(2)                                          <---------AGP1                    ------ ---------AHL20(2)                                           --------->ARR11(3)           <---------GLK1(2) -------->AHL20(2)                                           <---------ARR11(3)           <---------ARR14(2) ------DOF2            --------->TOE2(3)                     --------->AGP1---------->DOF2--------->KAN4(2) -----DAG2 <-----------HVH21<---------ATHB12                <---------CCA1(2)           <---------YAB1   ttttaaattttggtgtcatttctcatcttaatcaatttgtttttgagttttattcttctattagatcttttatacatcaaagaatagatgaagattcctc  19894600                                                               <---------ZAT18                                       <---------ANAC55(2)     --------->ZAT14                                       <---------ANAC55(1)     <---------ARR14(2)                                       <---------ANAC58        --------->ARR14(2)                               <---------ARR11(3)  <-----------GT1                    --------->GLK1(2)     --------->TOE2(3)   <-----------GT1         <-----------GT1     <----------DOF2 <---------GLK1(2)     --------->TOE1(3)   --------->YAB1<---------ANAC58 <----------DOF2             <---------At4g35610 >ZmHOX2a(1)         <---------AHL20(2)--------->ANAC55(2)     <---------ZAT14 <----------DOF2   cctaaaaccttatagtatgtcatttattcacaatatgttatacgtgttaattttctctcttttagtatactctttttttttctttcagattccatcccaa  19894700                                                          --------->At4g35610          ----------->GT1                      --------->ARR14(2)               <---------YAB1   <--- <---------ANAC58                              <---------ARR14(2)          <---------ICU4   <-------- <---------ANAC46    ------>MYB46(1)           --------->GLK1(2)          ------->TEIL<-----------GT1 <---------ANAC58    ------>MYB83         <-----------GT1 <---------At4g35610 <-----------GT1   <----   gttgcttaaattttgttaaaaccaactaaattccatagttcaatttacaaatctgtgatcagatgctatctaaatgaatattaccattttagcccttacc  19894800                                <-----------HVH21                                <-----------TGA1                      ------------>CBF                     --------->TOE2(3)                     --------->TOE1(3)                 --------->WRKY12                --------->DOF5.7(2)         <-----------GT1  <---------ATHB12                         ---------->DOF2 -------DOF2   ------->MYC3   --------->DEAR3(2)           ------>ZmHOX2a(1)                 ------>ZmHOX2a(1) -MYB52(1)     <-------MYC3   --------->MYB46(3)         *TSS     ---------->DOF2           --------- -----DAG2<---------At5g28300------->TEIL             <----------DOF2    --------->LBD16   <---------   ttttctgaaatttaccacgtttacctcaatgaaccgtcatcgcaaaaccaaaaaccctttcctatccctaaaacccgagagagcatcttcttctcctctt  19894900                                      <------ZmHOX2a(2)                           ==================HOX2a_HOX2a            --------->ANAC58         <---------ARR11(3)            --------->ANAC58   >>>>>>>>>TBF1          ===================================HOX2a_HOX2a          <------ZmHOX2a(1)<------ZmHOX2a(1)                         ------>ZmHOX2a(1)              -         <----------ID1 <------ZmHOX2a(1)                       --------->At4g35610             ===== ------>AGL15           =====================HOX2a_HOX2a        <---------At4g35610             ----- --------AGL1    --------->GLK1(2)   --------->ARR11(3)<---------WRKY38(1)          ----------->RAV1(1)   agggtagaagaaggacgaaaatcggaggaggaagaagaagatcgattcgatttgtgatcaacgatgagctccttcaatggaaacagcaacatcgacaacc  19895000                                                                                                    -                                                                                                    <                                                                                                   --                                                                                                 ----                                                                                            ------>NtERF2                                                                                           --------->TGA1a                                                                                           <---------ETT(2)                                  ---------->ID1                                           --------->ETT(2)                               <-------TEIL                                                ----------                             --------->ARR14(2)                                         --------->TOE1(2)                             <---------ARR14(2)                                      --------->ARR14(2) ----->ZmHOX2a(1)   --------->TGA1a                                                  <---------ARR14(2) =============================MYC_MYB      --------->ZAT6                     ------>ZmHOX2a(1)  ---- -->GAMYB           <---------TGA1a   --------->ANAC46------>ZmHOX2a(1)   --------->AtMYB61--------->ANAC46   tcctaatccaaaccctacttggacgtctccaaattcgtccccctaactctcatttcctctctcaatccctagacgacctcctcttcaaatccgacgacag  19895100            <---------ANAC46           <-----------------------TaNAC69(2)       --------->YAB1       <---------ICU4      --------->ICU4   <---------DEAR3(1)  <---------------------WRI1  <------NtERF2 ------>NtERF2 -------->DEAR3(1) ---------DEAR3(1) ------->ATERF1(1)                                        ---------->DOF2 ------->HVH21                                      <---------ANAC58 ->HVH21 ----------->TGA1        --------->ETT(2)   <---------ANAC58                            ----- ----->DEAR3(1)     <-----------HVH21        --------->GLK1(2)         --------->LBD16         <-----   cgacggcgatgatgacggagaaggtcagaccagtctcgacagagaagaagctaggcttgagaaagagctaatccgagtcatcgtctctggtcgaagcgat  19895200                                   --------->MYB46(3)                                   <---------MYB52(2)                                <---------WRKY12                                <---------WRKY38(1)    <------MYB83                         ----------->HVH21    --------->At4g35610                        <-----------HVH21     <---------At4g35610                        --------->LBD16      --------->ARR14(2)                       <---------ANAC58      <---------ARR14(2)                       <---------ANAC58   <---------ALFIN1                                         <-                    --------->ANAC58      --------->AtMYB61                         <---------ANAC46                    --------->ANAC58     --------->ANAC46                           <---------ANAC58                  ---------->DOF2--------->MYB52(1)    <---------ANAC58        <---------GLK1(2)   <-          <---------ARR14(2)    <---------WRKY45       <---------ANAC58  --------->ARR14(2)        <-          --------->ARR14(2)   --------->WRKY18(1)     <------MYB46(1)   <---------ARR14(2)        <- ---->GLK1(2)    --------->WRKY18(1)------->GAMYB  <-------GAMYB  <------ZmHOX2a(1) <---------ANAC58 ----GLK1(2)    <-----------HVH21<---------DOF5.7(2)<---------MYB52(1)  <------ZmHOX2a(1)     -------   tctctcaagccgaattcaggtcaagccgtgacagtcaacgaacaccacatctgcgttgggtttcatgaggatgaggaatcggattatcgtgtttgggagt  19895300                                                                                                  ===                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                 <---                                                                                     --------->HSFB2a(1)                                                                                     --------->HSFC1(2)                                                  --------->ARR11(3)                 <---------At4g35610                                                  <---------ARR14(2)             ----------->HVH21---                                                  <---------ARR11(3)         <---------ANAC58    ----                                                  --------->ARR14(2)         <---------ANAC46    ====                                         ----------->RAV1(2)                 <---------ANAC58   <----       <---------CCA1(2)               --------->ANAC46                   ===========================   <-----------HVH21                   --------->ANAC58             <---------HSFB2a(2)        ------ --------ANAC46                        --------->ANAC58             --------->HSFB2a(2)    ------>ZmHOX2a(1) --------ANAC58                      <---------ALFIN1              xxxxxxxxxxxxxxxx>smallRNA(s)<----- --------AtLEC2                     <-------TEIL <---------CCA1(2) xxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------ANAC58                     <---------REM1(2)   --------->LBD16   <--------P <---------HSFC1(2) -->ALFIN1                      <---------------AtSPL8<---------LBD16    xxxxxxxxxxxxxxxx>smallRNA(i)   ggcatggtcatatcatgttgtttgatgaagagaatgggtacacgcctgagtatatctacgggaattacttcgagaggttgcctgtgaagcttcctaataa  19895400  Previous    Next  AGI:  At3g53620.1    Description:  ATPPA4 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 4); inorganic diphosphatase/ pyrophosphatase. similar to ATPPA1 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 1), inorganic diphosphatase/ pyrophosphatase [Arabidopsis thaliana] (TAIR:AT1G01050.1); similar to unknown [Populus trichocarpa] (GB:ABK93489.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162) Range:  from: 19891482    to: 19894650    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g53630.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18692.1); similar to unknown [Populus trichocarpa] (GB:ABK93366.1) Range:  from: 19894857    to: 19896882    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version