Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        --------->SPL7                                                                     ================================                                                                     ================================                                                         ---------->DOF2                                                         <---------DOF5.7(2)                                                      --------->TOE1(3)                            --                   <-----------HVH21                  --------->TOE2(3)   --------->ALFIN1       ----                  <----------DOF2          --------->At4g35610       ------>ZmHOX2a(1)           <---        <---------ICU4  --------->MYB52(1) --------->LBD16        ------>NtERF2      <---------At4g35610       --------->MYB46(3) --------->DEAR3(1)<---------MYB52(1) <---------ATERF1(1)   --------->At4g35610       <---------ATHB12<---------ALFIN1    <---------At4g35610 ------>NtERF2         <------NtERF2<--     --------->WOX13(1)--------->ANAC46   --------->ANAC46    <xxxxxxxxxxxxxxxxsmallRNA(si3)<--------   cataacccaatcactgctagctttcacaccggctcttgaagtctccgctaactcaaccttaacgctgcctcctacggtggagatggcagcaacttgtccg  19757400                         --------->ANAC46              ------>NtERF2              --------->LBD16             --------->ANAC46 ====HOX2a_HOX2a      <-------TEIL =====HOX2a_HOX2a    --------->CCA1(2)                                                          ----- ---->ZmHOX2a(2)    --------->ARR14(2)                                                       -------- ----->ARR14(2)     <---------ARR14(2)                                                       <------- ------ARR14(2)     <---------GLK1(2)                                                        -------- ----ZmHOX2a(2)   ----------->ARR10   --------->ARR14(2)                                   ------>ZmHOX2a(2) ---HVH21   <---------LBD16         --------->ANAC46                            <----------DOF2 <----   atcgtcagtgtttctccgccaagattcacgactggtctacgatactcttcgaccatcttcttcacttcatctaaatgacttcctttcatttgatccgctg  19757500                                                                              <---------ANAC58                                                                       ----------->RAV1(1)                                                                    <---------ALFIN1                                                                   ------>NtERF2                                                                   <------NtERF2                                                                   --------->LBD16                                                                  ----------->RAV1(1)                                                                  --------->RAP2.6(2)                                                   ---------->ID1 --------->RRTF1(2)                                              <---------DAG2      --------->RAP2.3(2)                                              <----------DOF2     --------->DEAR3(1)                                           <---------ALFIN1      --------->RAP2.3(1)                                        --------->RAP2.6(2)      --------->ATERF1(1)                       ---------->DOF2  ------->GAMYB            --------->ANAC46                  ------>ZmHOX2a(2)     --------->DEAR3(1)      --------->At4g35610                 --------->At4g35610    --------->ANAC46        ------>NtERF2 <---------ANAC46                 <---------At4g35610   <------------AtMYB77     <---------ATERF1(1)                 <---------GLK1(1)     <------------MYB.PH3(1)  --------->LBD16                <---------AGP1         --------->MYB46(3)      <---------ALFIN1 ---->At4g35610 <---------ARR11(3)     --------->DEAR3(2)      --------->DEAR3(1)            <------- ->LBD16        --------->ARR11(3)    <---------At5g28300      --------->ANAC46            --------->ATHB12 --At4g35610    ------->TEIL         --------->ARR14(2)      ------>ZmHOX2a(1)<---------ANAC58   <<<< ->At4g35610    <---------ARR14(2)   <---------ARR14(2)      ====================================HOX2a_HOX2a -----At4g35610 --------->ARR14(2)   <-----------GT1         <---------ATERF1(1)          ------>ZmHOX2a(2)   ctaaaccccaattcaatggatctgccaaagtcttcgtagtaaccgccacttttgtcttctctcctccgccgcacaacattgcttcgatttgatccattgg  19757600                                                <------MYB83                                            --------->ATHB12                                  ------>ZmHOX2a(2)                                 --------->GLK1(1)                                 <------ZmHOX2a(2)                                --------->AGP1  <------MYB46(1)                                <---------AGP1 <---------MYB46(3)                                --------->ARR11(3)                                   <----------DOF2                                --------->ARR14(2)                                 <---------MYB46(3)                                <---------ARR11(3)                              <------MYB83                                <---------ARR14(2)                              <------MYB46(1)                               <---------CCA1(2)<---------ANAC46                <---------MYB46(3)                               --------->At4g35610         ---------->DOF2     <---------AtMYB61 --MYB52(1)     <---------TOE2(3)<---------GLK1(1)  ---------->DOF2         --------->ATHB12<<<<<<<<<MYB2 <<<<<MYB2 <---------ANAC46 <------ZmHOX2a(2)  --------->MYB46(2)           <-----------RAV1(1)   ttttcaagaagttgtgtttaggtgaatgagatcagatctcttgtattgtttggtgaaaggagaaagagagagtttgaattgttggtggtttttggttttc  19757700                                                          *TSS                                                          --------->ANAC55(2)                                                          <------MYB83                                                          <------MYB46(1)                                                          <---------ANAC55(2)                                                         --------->MYB111(1)                                                         --------->MYB59                                                         --------->MYB46(2)                                                  <---------MYB46(3)                         --------->AHL20(2)    <---------ZAT6   <------ZmHOX2a(1)                      ----------->GT1          <-----------RAV1(1)    <------ZmHOX2a(1)<---------ANAC46     --------->YAB1<---------MYB55(1)  ------------------------>ANAC81         --------->TOE2(3)    <----------ID1 <------ZmHOX2a(1)   ----------->GT1<------ZmHOX2a(1)  <---------MYB52(1)                        <---   tgaggaggaagaagagagaagagacgtttaaataagaaggacaatgttagtgttgttgttaggtaaggacaagagaagagagaagagagaacacaagttt  19757800                                  <---------ANAC58                                  <---------ANAC58                                  <------MYB46(1)                                 --------->MYB111(2)                                 <---------MYB46(3)                                 <---------DEAR3(1)       <---------MYB46(3)                                 --------->MYB55(2)     <---------MYB52(1)                                <--------P             <-------GAMYB                                <---------MYB55(1)    <---------MYB46(3)   ------>ZmHOX2a(2)                                --------->ALFIN1-------->HAHB4           <---------ARR11(3)                              <---------ANAC58  <---------ICU4           --------->ARR11(3)                              --------->ALFIN1  --------->YAB1       <------MYB46(1)            -----                   --------->ZAT14<------MYB83 --------->ICU4        <------MYB83               <----               --------->DAG2 <---------ANAC58 <---------ATHB12  --------->ATHB12  <---------MYB46(3) ------YAB1   ---------->DOF2 <---------ANAC46<---------TOE2(3) <---------YAB1    <---------ANAC46   tgattttttggagaaaaaaagtgaagtatgaggggtgggtgagagtttaatgatgaccgttggatgaagattggtgatctaatggtggataatggaaaac  19757900                                                                           <------MYB46(1)                                                                      <------MYB46(1)                                                                      <------MYB83                                                                     --------->MYB59  <---------ANAC58                                                                     <---------AtMYB61<---------ANAC58      <<<<<<<<<<MYB80                                           <---------AtMYB61     <---------ANAC46     <------MYB83                                          <------MYB46(1)--------->MYB59     -------     <------MYB46(1)                                       <------MYB83   <---------AtMYB61   <------ ------>GT1   ----------->GT1  --------->WOX13(1)         <---------AtMYB61----------->GT1   <------- -----ANAC55(2)    ---------->DOF2                       <---------MYB55(1)<------MYB83      <-------   gtgaatttggtttgagtcgcaaaaagagtttgtcaattagtttttagatttaaaacgcgtttggttttggtttggtttggttaaatttgtgtgttccgtc  19758000                                                                                   <------MYB83                                                                                   <---------MYB46(3)                                                                                   <------MYB46(1)                                                                                  <---------MYB46(3)                                           <---------TOE2(3)                      --------->MYB55(2)                                        <---------ANAC46                          <---------AtMYB61                                       <------NtERF2                              --------->MYB46(2)                                       --------->At4g35610                        <---------DEAR3(1)                                       <---------At4g35610                        --------->MYB111(2)                                      <---------MYB46(3)                         <--------P<---------                                   <------MYB46(1)                               <---------MYB55(1)       --------->TOE2(3)         <---------ANAC58                                <---------MYB52(1)       --------->TOE1(3)         <---------ANAC58                               <-------GAMYB     ------->TEIL                <---------ANAC46                              <---------MYB46(3)     -------->P      --------->DAG2<------MYB83                               <---------ANAC58 -->LBD16           --------->DAG2--------->MYB55(2)                          <---------ANAC58 -----HVH21--------->ANAC58 <---------ANAC58                --------->ICU4    <---------RAP2.6(2) --ANAC46  --------->ANAC58 <---------ANAC58 <------ZmHOX2a(1)               <---------LBD16      <-- --ANAC55(2)       ---------->DOF2<---------MYB46(3)   ----------->GT1    <----------DOF2  <---------DAG2   aaatatcaacctcaagcatcgaaaaggtagtcgtggctggtggctgaggaattgagaaggtaataactaataagcgttttgcggttggtgagactttttg  19758100                                                                            --------->ZAT14                                                                   <------ZmHOX2a(1)                             <---------TOE1(3)                   <---------TOE1(2)                             <---------TOE2(3)                   <---------TOE2(2)                             <---------YAB1                    --------->TOE1(2)                          <---------YAB1                       --------->TOE2(2)               ------ -DOF2 ----------->GT1<---------WOX13(1)                 <---------HSFB2a(2)<---------ZAT14  <------- --------ID1        --------->ATHB12                     --------->HSFB2a(2)<---------ZAT18  <-------   gagacaaaaatgtttatacgagtgattgattatggtttgggaatgaaatgggagtagttgtggaacgtaggaatgtagttcagtcaattcaaggtcgtcc  19758200                                 <---------------AGL15                                 --------------->AGL15                                ----------------->AGL3                                <-----------------AGL3                                <-----------------AGL2                      --------->AHL20(1)                     <---------AHL20(2)                     --------->AHL20(2)                <---------YAB1                    <---------AHL20(2)               ----------->GT1       <---------ANAC58    --------->MYB52(2)    <---------AHL20(2) --->PCF2        <---------AHL20(2)          <------MYB83                                       <---- --ATERF1(1)     --------->AHL20(2)          <------MYB46(1)                        ---------->DOF2 --SPL7<---------ANAC58<---------YAB1       --------->MYB59               ------->TEIL          -----   ccactaatttcgttttcaaaaaattattttagttgctatttgtagtttggttttattgtgaatatttgtttatatgtatcaaaaacaaaagttgctaaaa  19758300  Previous    Next  AGI:  At3g53260.1    Description:  PAL2 (phenylalanine ammonia-lyase 2); phenylalanine ammonia-lyase. Identical to Phenylalanine ammonia-lyase 2 (PAL2) [Arabidopsis Thaliana] (GB:P45724;GB:Q53ZM9;GB:Q8RWP4;GB:Q94KC9;GB:Q9SCN5); similar to PAL3 (PHENYL ALANINE AMMONIA-LYASE 3), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT5G04230.1); similar to PAL1 (PHE AMMONIA LYASE 1), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT2G37040.1); similar to phenylalanine ammonia-lyase, putative [Arabidopsis thaliana] (TAIR:AT3G10340.1); similar to phenylalanine ammonia-lyase [Brassica napus] (GB:AAX22053.1); similar to phenylalanine ammonia-lyase [Brassica napus] (GB: Range:  from: 19755029    to: 19757758    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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