Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------ANAC46                                                          ---------->DOF2                                                      --------->TOE2(3)                                                    <---------ARR11(3)                            ---                                                    --------->ARR11(3)                           <---       ---------->DOF2                             <---------CCA1(2)                             <--- ---->DOF2                                        <---------ARR11(3)                      --------->GLK1(2) >ANAC46           ---------->DOF2                --------->AHL20(1)                     <---------GLK1(2) >ANAC58          --------->YAB1                  <---------AHL20(1)     ----------->GT1 --------->ARR11(3) >ANAC58   ----------->GT1                  <-----------GT1    ----------->GT1           <---------ARR11(3)   agcatttacaaaagtgtcaataaaagttagaagaaaaaaactgatataacaatatatcttaaaagaggtgtatacatgtaaaacaagtcgagattttgga  19364200                                                                                  <---------ZAT2                                                                                  --------->At4g35610                                                                                  <---------At4g35610                                                                                 ----------->RAV1(1)                                                                                <-----------RAV1(2)                                                                         --------->ANAC46                                                          ------>ZmHOX2a(2) <-----------ARR10                                                        <---------ARR11(3)  <---------ARR14(2)                                                    --------->YAB1  <---------ZAT18     <----------DOF2                          >>>>>>>>>TBF1  <----------DOF2--------->ARR14(2) ------>ATHB12  <------NtERF2              >>>>>>>>>TBF1--------->ARR11(3) <---------GLK1(2) ------YAB1------>ZmHOX2a(2)            >>>>>>>>>TBF1<---------KAN4(2)------->TEIL--------->ZAT2 ---ZmHOX2a(2)<---------DEAR3(1) ---------->DOF2 >>>>>>>>>TBF1      --------->ZAT18      --------->ALFIN1   tcattggctttgatcggaggcgatattagcatcttcaaagaagaagaagaagaagaatgatctctttgaatgcacccgaatcccagcagaggtgagactg  19364300                                                                                               ------                                                                                             --------                                                                                    <---------------AGL15                                                                                    --------------->AGL15                                                                                   <-----------------AGL2                                           <-------TEIL                    ----------->RAV1(1) ------                                    --------->ANAC58            --------->ANAC58   <-----------------AGL3                  <------ZmHOX2a(2) --------->ANAC46            --------->ANAC46   ----------------->AGL1         <---------AHL20(2)         --------->ANAC58            --------->ANAC58   ----------------->AGL2        <---------AHL20(2)      ----------->RAV1(1)           ----------->RAV1(1)  <-----------------AG        --------->AHL20(2)     --------->MYB46(3)            --------->MYB46(3)    <-----------------AGL1 --------->At4g35610---------->DOF2------->GAMYB       ---------->DOF2<---------ATHB12   <---------LBD16   aacatctgaaataaatgacgatcaaagacatcaacaacacacaaattcatatcgaatcaaagaaccacacaaatcaacaacatttgctaatttcggaaag  19364400                 --------->GLK1(2)                <---------GLK1(2)                --------->ARR11(3)                <---------ARR14(2)                --------->ARR14(2)               --------->HSFB2a(1)               --------->HSFC1(2)               <---------HSFB2a(1)                                                  --------->HSFC1(2)               <---------HSFC1(2)                                                   --------->HSFB2a(1)        <---------LBD16                                                             <---------HSFC1(2)        --------->TOE1(2)                                                           --------->ZAT2       ----------->RAV1(2)                                                          --------->At4g35610     <---------GLK1(1)                                                              <---------ZAT2    <---------ARR14(2)                                                              <---------At4g35610    --------->ARR14(2)                                          --------->RVE1(1)  ------->TEIL    <---------ARR11(3)                                   ----------->GT1      --------->MYB52(1)    --------->ARR11(3)                                 <---------ZAT14    --------->ANAC58 --->ANAC58   <---------KAN4(2)                        --------->ZAT14    --------->ANAC58 -->DOF2--------->TOE2(2)                             --------->ALFIN1  <------ZmHOX2a(1) --->ANAC58   ----------->ARR10    <----------DOF2    ----------->GT1--------->At4g35610    <--------   caagaagatacctgggaagattctgaagacaattcatctttagagagagacagagagtgtagaaaaatatcagaggaagcaaacgaagctgctactttct  19364500                                         --------->AHL20(2)                                         <---------AHL20(1)                                         --------->YAB1                                         <---------AHL20(2)                                         <--------ATHB1                                        <---------YAB1                                        --------->ICU4                                      --------->YAB1                                     <---------YAB1                                    --------->AHL20(2)                                    --------->AHL20(1)                                    <---------AHL20(2)                                     --------->TGA1a                                   <---------ICU4                                          --------->O2                                   --------->YAB1                                          <---------O2                                  <---------YAB1                                           <---------ANAC55(2)                              <---------MYB52(1)                                           --------->ANAC58                             ----------->GT1                                               --------->ANAC55(2)                         --------->GLK1(2)                                                 <---------TGA1a                         <---------ARR14(2)                                                --------->ANAC58                         --------->ARR11(3)                                             --------->WRKY18(1)                         --------->ARR14(2)  <-----------GT1                           <-----------HVH21    <---------TOE1(2)   --------->RVE1(1)<---------ICU4                   *TSS    ----------->HVH21 --DOF2           >>>>>>>>>GATA-1 --------->ICU4                          --------->ALFIN1 --------->ANAC46   cagtcccaagttcgacgatagataaaaaatctggtaattataataattttcaattcatgtccaaaaatgtttgtgagtgtgactctgacggtcacgcgac  19364600                                         --------->WOX13(1)       --------->ALFIN1                                <---------LBD16            <---------ANAC58                            <---------ZAT14                <---------ANAC55(2)                            --------->ZAT14                <---------ANAC46                            --------->At4g35610            --------->ANAC58                            <---------ABI4(2)              <---------ANAC58                    --------->MYB52(1) ------------>CBF    --------->ANAC55(2)                    <---------ALFIN1  --------->ANAC58     ----------------->AGL1                 --------->ANAC58     --------->ANAC58     --------->ANAC58          --------->DAG2                 --------->ANAC58--------->LBD16      --------->MYB52(2)            ---------->DOF2                 --------->PCF2<---------LBD16        <---------MYB46(3)       --------------->AGL15               <---------PCF5<---------ALFIN1  <----------DOF2 --------->DAG2  <---------------AGL15          <------------CBF  --------->ZAT18<---------ATHB12<---------ANAC55(1) <---------HSFB2a(2)       ------------>CBF     <---------At4g35610<---------DAG2 ---------->DOF2  --------->HSFB2a(2)   tcacgacgatacaattgggaccccacggtctgcaccgggaatgcaatcacttttgtttgttacgtaaagtggaacacattactagaaaaagtctccaact  19364700                                                    <---------ALFIN1                                                   --------->At4g35610                                                   <---------At4g35610                                              --------->REM1(1)                                              --------->O2                                              --------->bZIP60(2)                                              --------->TGA1a                                            <---------ALFIN1                                            ----------->RAV1(1)                                       --------->At4g35610                                       <---------At4g35610                                       --------->ZAT2                                       ----------->RAV1(2)                                       =================RAV                              <---------YAB1                                      <-----------RAV1(1)              ----------->GT1 --------->AHL20(2)                                   <---------ARR14(2)            <---------AHL20(2)    <---------AHL20(2)                                   <---------ARR11(3)       <---------YAB1             <---------ICU4                                   --------->ARR14(2)       --------->ICU4             --------->ATHB51                                   --------->ARR11(3)  --------->DEAR3(1)             --------->ICU4-      --------->YAB1     --------->ANAC46 ------>NtERF2--------->DREB2C(2) --------->KAN4(2)       <-   ttccacaataacaaaaacaccctcttcacaaaactaatatctgctgccacatcagcaccgtcaatattgaattgggttattctgtctaattatttttgtt  19364800                                                                                   ==================                                                                                   <---------O2                                                                                   --------->O2                                                                                   <---------TGA1a                                                                                   --------->TGA1a                                                                                   --------->ANAC58                                                                                   --------->ANAC55(2)                                                                            ------>NtERF2                                                                           --------->ANAC58                                                                           <---------TGA2(1)                                                                           --------->ANAC46                                                                           <---------bZIP60(1)                                                                        ----------->HVH21                                                                      <---------At4g35610                                                                    --------->YAB1 --------->ANAC58                                                                   <---------ATHB12--------->ANAC46                                                                <---------ALFIN1   <---------ANAC55(2)                                                              --------->TCP16(2) <---------ALFIN1             ----------->GT1                                 <---------PCF5--------->ANAC58      --------------->AGL15                                  <---------TCP16(1)<-----------HVH21      <---------------AGL15   --------->GLK1(2)     <---------ARR11(3)--------->At4g35610 ---------->GT1     --------->DAG2   --------->AHL20(2)      <---------PCF2--------->bZIP60(1)      - --------TOE2(3)   ---------->DOF2   <---------AHL20(2) --------->MYB52(1) --------->TGA2(1)<--------   agaggttacttcatgaagataaaaagtgagaggttctatttttatatttctcaagagctaatgggaccactcatatgacgccatcacgtctcttattgtt  19364900     <------ZmHOX2a(2)        <-----------GT1    <---------ARR11(3)     <---------ARR11(3)    --------->ARR14(2)     <---------AHL20(1)                                 --------->WOX13(1)    --------->ARR11(3)     --------->AHL20(1)                                <---------AHL20(2)    <---------ARR14(3)     --------->ARR11(3)    ----------->RAV1(1)        <---------ATHB12    --------->AGP1 --------->AHL20(2)  --------->ANAC46                   --------->WOX13(1)    <-----------ARR10--------->YAB1    --------->ANAC58               --------->WOX13(1)    <---------ARR14(2)     <---------ICU4--------->AHL20(2)          --------->AHL20(2)    --------->ARR14(3)  --------->AHL20(2)  --------->ICU4           <---------AHL20(2)   --------->RVE1(1)<---------YAB1<---------At4g35610               --------->AHL20(2) ==========bZIP_DOF<---------AHL20(2)  --------->ANAC58             <---------AHL20(2) --------->DOF2   --------->YAB1  --------->At4g35610--------->At5g28300<---------ATHB12     <------- -YAB1------>ZmHOX2a(2) --------->YAB1 --------->ANAC55(1)    ----------->GT1--------->AHL20(2)   acaaaagatcttctctgcaattttaataatattttcagcacaagtaattagcaacagtaattgtctgtaaataaatcaattaatcaacaggtatttgtca  19365000                                                                                     <---------ARR11(3)                                                                                     --------->GLK1(2)               <----------ID1                          ---------->DOF2           --------->ANAC55(2)               ----------->GT1                     <------ZmHOX2a(1)        ----------->GT1              ----------->GT1                    --------->ANAC58         ---------->DOF2              ------------------------>ANAC81    <---------TOE2(3)       <------ZmHOX2a(1)        --------->At4g35610                      --------->ANAC58     --------->At4g35610      --------->YAB1 <----------ID1            --------->CCA1(2) --------->DAG2  <---------ANAC55(2) ----HVH21  ---------->DOF2             ----------->RAV1(1)     ---------->DOF2 <-------TEIL   gagcaaaatcagaagaaaggaaaaaaacaaaaaaaaacgctgcaacaagataaggaagaaagaagaaaaagcagaggaaagttacataatctttctatag  19365100  Previous    Next  AGI:  At3g52180.1    Description:  ATPTPKIS1/DSP4/SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase. similar to protein phosphatase-related [Arabidopsis thaliana] (TAIR:AT3G10940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68845.1); contains InterPro domain Protein-tyrosine phosphatase, dual specificity; (InterPro:IPR000340); contains InterPro domain Protein-tyrosine phosphatase; (InterPro:IPR000387) Range:  from: 19360630    to: 19364574    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g52190.1    Description:  PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1); nucleotide binding. Identical to SEC12-like protein 1 (PHF1) [Arabidopsis Thaliana] (GB:Q8GYE0;GB:Q9SUY6); similar to WD-40 repeat family protein / St12p protein, putative [Arabidopsis thaliana] (TAIR:AT5G50650.1); similar to WD-40 repeat family protein / St12p protein, putative [Arabidopsis thaliana] (TAIR:AT5G50550.1); similar to STL2P (SEC12P-LIKE PROTEIN), nucleotide binding [Arabidopsis thaliana] (TAIR:AT2G01470.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68842.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repea Range:  from: 19364950    to: 19368052    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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