Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------ANAC58      <---------ANAC58                                    <---------ZAT6                           <- ------>ZmHOX2a(1)     <---------ANAC58           ------->GAMYB                                   --- ---ANAC58             <---------ANAC58          --------->ANAC58                                 --- ---ANAC58      --------->YAB1                   --------->ANAC46                              ------ -->ANAC55(2) --------->GLK1(2)                  --------->ANAC58                           --------- ---ANAC55(2)<---------GLK1(2)                 --------->MYB52(1)      <---------AtLEC2 <----------DOF2   gtcctcttgcctacagaatcgtgaggcttagctagagcaaatatttgcccaacgcaagtagtcttaagagagtgcatgttgtctctctctctttgtccta  19360100                                                                                                    <                                                                                          <---------MYB52(1)                                                                                       ------>ZmHOX2a(2)               --------->At4g35610                                                     <-------TEIL<-  <---------AHL20(2)    --------->DAG2                                                <------ZmHOX2a(2) --------AHL20(2)      ---------->DOF2                                               --------->AGP1-- ------>AHL20(2)    --------->At4g35610                                              <---------ARR14(2) ------>YAB1--------->At4g35610      --------->GLK1(2)                               <---------GLK1(2) >ZmHOX2a(1)<---------At4g35610  --------->YAB1              ---------->DOF2         --------->ARR14(2) ->ID1  ------>ZmHOX2a(1)----------->GT1    ----------->RAV1(1)                    ----------->ARR10-   ttatataatcctgtagcagaagagctaaagtgaaatcagaatcagacaacataacaagtctaccaaagaaacacaattcttaagacagatccgtttagtt  19360200            --------->At5g28300                                           ----------->GT1 ---------ICU4                        --------->MYB52(1)             --------->ANAC58   <---------At4g35610 --------YAB1                    ----------->RAV1(1)                 --------->ANAC58   ----------->RAV1(2) ------->ICU4               --------->MYB46(3)                       --------->ANAC46   --------->At4g35610 -------->ATHB51 ------->GAMYB--------->ANAC46                  ------->GAMYB  --------->ICU4 <------ZmHOX2a(1)   cattatttcgaaacagtaactgtctaaataacaaacaacaaaacgaagactctcaatcccagacaacacacacgaagagtgattcttatcatctgaggac  19360300             --------->ANAC58             --------->ANAC58                                                      ------->GAMYB             ----------->GT1                                                       ==================           ---------->DOF2                                                       --------->At4g35610     --------->ATHB12                          <---------ANAC58                  <---------At4g35610     -------->ATHB1                            <---------ANAC58           --------->GLK1(2)     --------->ATHB51                      --------->CCA1(2)        --------->TOE1(2)    <---------ATHB51              --------->YAB1<---------YAB1      --------->TOE2(2) --------->HSFB2a(2)    --------->ICU4             --------->YAB1  <---------ANAC46    ----------->RAV1(2)<---------HSFB2a(2)   aattgaattattgaaaagcaaaaacttcttcgataatgagaagagagatgcttatagtttgtagggtttacctgagactctgcaactgcgagaaaacgag  19360400                                                                                                -----                                                                                              -------                                                                                              -------                                                                                             --------                             <----------DOF2                                                 <------NtERF2                            <---------ICU4                                                   --------                           <---------YAB1                             --------->ANAC46      <--------                    ====================bZIP_DOF             --------->ZAT14        --------->ALFIN1                    <---------TGA1a                          <---------ZAT14        <---------ZAT6                    <---------O2                       --------->ANAC46    <<<<<<<<<TAC1    <--------   <---------ETT(2) --------->O2                       --------->ANAC58 --------->ZAT14    *TSS <----   --------->ETT(2) --------->TGA1a                    --------->ANAC58 <---------ZAT14    <---------DEAR3(1) =============================MYC_MYB                 --------->SPL7--------->ANAC46<-----------RAV1(1)   agaggtcgatagattagaactcacgagtcatctttgcaaatggactcactaaaccctacgcagtacacagacacaacactgtctcagtgttgggaggcgc  19360500     <---------ARR14(2) --------->LBD16                                                                      <---------DAG2 ---->ATERF1(1)          <----------DOF2                                              <----------DOF2 -->ANAC58      <---------ICU4                                                     <---------ALFIN1 -->ANAC58      --------->ATHB51                                <-----------GT1  <---------ALFIN1 ->RAP2.3(1)    <---------AHL20(2)                           --------->AHL20(2)  ----------->RAV1(1) ->ATERF1(1)    --------->AHL20(2)                <----------DOF2             --------->ANAC58 -ORA47(2)     --------->ICU4                 <----------DOF2<---------AHL20(2) --------->ANAC46 -ATERF1(1)    <---------YAB1           <-----------TGA1    <---------AHL20(2)--------->ANAC58 --NtERF2 ----------->GT1<---------DAG2--------->YAB1  <----------DOF2        --------->ANAC46<------   aagcgggaatttgggtaattatttcaacttttggggcaaaatcgtcatctttcttttctttatttatttccagttttgacccccaacacttttttttatc  19360600                       <----------DOF2                 <---------WRKY18(1)                --------->WRKY45                              <---------ICU4                --------->WRKY38(1)                           --------->YAB1                --------->WRKY12                             <---------ATHB12               <--------P         <---------ICU4            ------>MYB83                <---------TOE2(3)            <---------TOE2(2)    <---------ATHB12           ------>MYB46(1)             ----------->GT1        ----------->HVH21     ------->GAMYB            <-----------GT1               --------->ICU4 -----GT1   <---------TOE1(2)--------->MYB46(3)     <---------ICU4              ----------->GT1   gatttagaccctcacaggttgaccactttcaaccaaagattacattttcatcaattttgaccaatcttcacatggtgaaagaatgtaattaagaaaaaac  19360700             <---------AHL20(1)             --------->AHL20(2)             --------->AHL20(1)             <---------ARR11(3)                                           --------->MYB52(1)       <-----------GT1                                      <---------At4g35610 ------->TEIL <---------ARR11(3)          --------------->AtSPL8     <----------DOF2   --------->ARR14(2) --------->ARR11(3)<---------YAB1                    <-----------GT1      <---------ARR14(2)   aaagattttaaactatatattatacttgaacatagtactactaacttcatgtttttttcttttgctgctataagcgtaactgtatgtattactaacatga  19360800                    <---------------AtSPL8                    --------------->AtSPL8                    <---------------AtSPL3   <---------ARR14(2)   <---------AHL20(2)                        <---------GLK1(2)   <---------AHL20(1)                        --------->ARR14(2)   --------->AHL20(2)                       <-------GAMYB                                --------->ARR14(2)   --------->AHL20(1)                       <---------At4g35610                          <---------ARR14(2)   agcattttattgttactagtaagttgtacattcacatagtctagtcggatgctctcaactctcaaacttctgcctcagaacaagtctccaagaactggat  19360900                                                                                               <-----                              <-----------ARR10                                             ------>MYB83                              <---------ARR11(3)                                            ------>MYB46(1)                       --------->At4g35610                                                --------->TOE2(3)                       --------->ZAT2                                                     <---------MYB59                       <---------At4g35610                        <---------ALFIN1        <---------MYB111(1)                     --------->MYB46(3)                         ------>MYB46(1)    --------->ZAT18                ------>ZmHOX2a(1)                               ------>MYB83       <---------ZAT18       --------->HSFB2a(1)<-----------RAV1(2)              <-----------GT1      ------>ZmHOX2a(2)       <---------HSFB2a(1)---------->CDC5                <---------REM1(1)    <---------ARR14(2)   <-   <---------ANAC58===================RAV               --------------->AtSPL8--------->ARR14(2)-----   <---------ANAC58----------->RAV1(1)              --------->LBD16 <---------ALFIN1      <---------MYB46(2)   tagtttcgagcgttcttcctccaacagctcagggtcttcgctcgatagtctctcccgagttgtaccatccacacttgttggatcgtccactacctaattc  19361000  Previous    Next  AGI:  At3g52170.1    Description:  DNA binding. similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G58210.4); similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G58210.1); similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G58210.2); similar to plastid DNA-binding protein [Brassica napus] (GB:BAD90706.1) Range:  from: 19357777    to: 19360491    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g52180.1    Description:  ATPTPKIS1/DSP4/SEX4 (STARCH-EXCESS 4); polysaccharide binding / protein tyrosine/serine/threonine phosphatase. similar to protein phosphatase-related [Arabidopsis thaliana] (TAIR:AT3G10940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68845.1); contains InterPro domain Protein-tyrosine phosphatase, dual specificity; (InterPro:IPR000340); contains InterPro domain Protein-tyrosine phosphatase; (InterPro:IPR000387) Range:  from: 19360630    to: 19364574    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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