Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                 <---          <------ZmHOX2a(1)                                                                      ---- ---------->DOF2                                                                               ------ ------>At4g35610                                                                              ------ -------At4g35610                                                                              ------ ----->ANAC58                               --------->ARR11(3) --------->TOE1(2)            --------- ----->ANAC58      --------->YAB1       ---------->DOF2       --------->YAB1--------->MYB52(1) ------   agctaaagactaggaccactataacaactactactcgactcttaaagaccatgagtttattcaaacatgagaacaacttaacgacttattcaaaacccaa  19097000                                                                    <---------DAG2                                                                <---------ZAT18                                                                <---------ZAT14                                                                --------->ZAT14                                                              --------------->AtSPL8                                                          ----------->RAV1(1)        <---------ARR14(2) ------->MYB52(1)                                       <------NtERF2                --------->ARR14(2) ---->GAMYB                                            --------->LBD16           --------->HSFB2a(2) ------MYB55(2)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ----->MYB46(3)                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    <---------LBD16 ------MYB52(2)                   --------->ARR14(2)  <---------RAP2.6(2)       <---------ANAC46 ----->DEAR3(2)            --------->At4g35610        <---------ANAC46        xxxxxxxxxxxxxxxx>smallRNA(i) --->MYB52(1)<---------ANAC58    <------ZmHOX2a(1)   <---------LBD16<----------DOF2--------->LBD16 >MYB46(1)   <---------ANAC58  xxxxxxxxxxxxxxxx>smallRNA(i)  ------->GAMYB  --------->ZAT2          - ----->RAV1(1)   ----------->HVH21<---------ARR14(2) --------->RAP2.6(3)    <---------ZAT2      <---- >ANAC46   --------->ICU4  <---------At4g35610  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------GLK1(2) >MYB83    <---------YAB1<-----------RAV1(2)  xxxxxxxxxxxxxxxx>smallRNA(i)--------->LBD16<---------ANAC46   cagacggagagtaatgcttgtgacaactcagatgaggattccagtgcttcggtattgcggcaacagcgtacttttccgagcttcgcggattcggtgtttc  19097100                                 <----------DOF2                                ------>ZmHOX2a(2)                               <------ZmHOX2a(2)                              <---------ARR11(3)                              --------->ARR11(3)                           ------>NtERF2                           --------->LBD16                          --------->RAP2.6(2)                        --------->ZAT2   ===================================HOX2a_HOX2a              --------->AHL20(2)          ------>ZmHOX2a(1)   ====================================HOX2a_HOX2a             <---------AHL20(2)   <----------------   ------>ZmHOX2a(1)    <---------At4g35610          <-----------RAV1(1)        <---------ANAC58 ----->ZmHOX2a(1)       --------->At4g35610          <---------ZAT6             <---------ANAC58 -------GT1             <---------ZAT2       <---------ZAT6  <----------DOF2 <---------WOX13(1)   tcctcctaacttggtcttgatcactcagccgcgatcttttgtacttagagttatagtgttgttctttaattttctgtagattgcttctctctccttctat  19097200                                                                             <---------ICU4                                                                     <---------ZAT14                                                                     --------->ZAT14                                                                   <---------ZAT14                                                                   --------->REM1(2)                                                                 <---------------AtSPL8                                                                <---------ANAC46                                                                <---------ANAC58              --------->YAB1                                    <---------ANAC58<-----------GT1             --------->AHL20(2)                            ---------->DOF2  --------->ICU4           --------->YAB1                           <---------AHL20(2)  --------->At5g28300       ---  <----------DOF2   ----------->GT1             --------->AHL20(2) --------->ZAT14               <--- --------ANAC81<---------AHL20(2)   <----------DOF2 --------->AHL20(2) ----------->GT1           ----   tcttctttgtcaaaaataaaaatggtataaaacttcatcttttacccaaaaaaaataaatgtaaagtcgtgtacagtgaatattactctgttttcaactc  19097300                                                                         ----------->GT1                                                                         <---------ANAC58                                                                         --------->ANAC58 --------->ANAC58                                                                         <---------ANAC58 <---------ANAC55(2)                                        --------->ANAC46                 --------->ANAC55(2)                                        --------->ANAC58                 --------->ANAC58 --------->ANAC46                                        --------->O2                     --------->ANAC55(1)                                        --------->ANAC58                 <---------ANAC55(1)                                     --------->ZAT18                     <---------ANAC55(2)                                ---------->DOF2                          <---------ANAC46 --------->ANAC58                               --------->AHL20(2)                       <-----------------------TaNAC69(2)                               <---------AHL20(2)                    <-------GAMYB  --------->ZAT14                              <---------YAB1                        --------->MYB52(2)    --------->ANAC55(2)       --------->ATHB12    <---------YAB1                           <------MYB83    --------->ZAT18       --------->ATHB51    <---------AHL20(2)                       <---------MYB46(3)   <---------LBD16      <---------YAB1       --------->AHL20(2) <-------TEIL  ----------------------->TaNAC69(2)    --------->YAB1        --------->AHL20(1) --------->CCA1(2)      <------MYB46(1) <---------ZAT18 ------>LBD16             --------->AHL20(2)--------->ARR14(2)  <-----------RAV1(1) <---------ZAT14 ------HSFB2a(2)          <---------AHL20(1)<---------ARR14(2)  <---------MYB46(3)<---------At4g35610 ----->HSFB2a(2)        ---------->TaMYB80  <---------GLK1(2)<---------MYB46(3) <-----------GT1 -----   cagaaaacataattgggcctattgggaatataattaaagcccacgagattcgactagcgagagttgttgttggttacgtaatttagcgcactacggaaca  19097400                         --------->ANAC58                         <---------ATHB12                         --------->ANAC58                       --------->WOX13(1)         --------->AHL20(2)    ------->GAMYB*TSS                --------->YAB1       ------>MYB46(1)   --------->ANAC46 ------>ZmHOX2a(2)    --------->MYB46(3)                   -       ------>MYB83    --------->ZAT6 ----------->ARR10  XXXXXXXXXXXXXXXXXXXX>MIR4227          <-----     <---------MYB59<---------WRKY38(1)  <---------At4g35610--------->MYB46(3)      <---------At4g35610 ----->DOF2  <-----------GT1--------->MYB52(1)        --------->YAB1                --------->At4g35610   aagaagaccaaatttatacgagtcaacactcaacagcgatttgatctgcgatttgatcatcaacaacaatcactccaaattttgtctgctcaccattttt  19097500                                                                                                    -                                                                                                    - ---------->DOF2                                                                 ---------->ID1     - -------->ANAC46                                         <<<<<<<<<TBF1           <---------CCA1(2)--- ------GT1       <---------CCA1(2)       ------>ZmHOX2a(1)          <---------SPL7                <--   ccacaaagccaattctcttgtatccaatgcctatgttctactcctctcgttttctcttcttcttcaccatcgtccccttactcgtctctatcgctctcta  19097600                          --------->ARR14(2)                                  <----------ID1     ----                          <---------ARR14(2)                                 --------->At4g35610 <---                         <---------MYB52(1)                            <----------DOF2           ----                        --------->LBD16                              ------>NtERF2               <---                      <---------LBD16                                <---------At4g35610        -----                    <---------ARR14(2)                              --------->RAP2.3(2)       -------                    --------->ARR14(2)    --------->ANAC58          --------->DEAR3(1)      <--------                   <---------ZAT2         --------->ANAC46         --------->DEAR4(2)    ----------->HVH21   --------->ANAC46--------->At4g35610    --------->ANAC58         --------->RAP2.3(1)--------->ARR11(3) ------->P  --------->WRKY12             --------->SPL7            <------NtERF2      <-----------ARR10 ----->MYB83----------->HVH21<---------ANAC58 ------>NtERF2       ------>NtERF2       <---------ARR11(3) ----->MYB46(1)    --------->ZAT2 --------->LBD16------>ZmHOX2a(1)--------->LBD16    --------->CCA1(1) ------>AtMYB61-------->ZAP1 <---------ANAC58--------->DEAR3(1)  --------->ANAC46    --------->RVE1(1) -------MYB111(1)  <---------At4g35610 <---------SPL7           <---------LBD16----------->RAV1(1)   ccaactcgacacatttgacccagctccggttccttccgaggcatacgcctcctctactacttcaatcccgccgcttatcagcgacaaatatctcaccgga  19097700             <------NtERF2             --------->ATERF1(1)     <XXXXXXXXXXXXXXXXXXXXXMIR833-3P  --------->GLK1(1)     --------->ATHB12                 <---------GLK1(1) ----->At4g35610      --------->HSFB2a(2) ------At4g35610      <---------HSFB2a(2)          <---------ICU4 ----->ZAT2<---------ANAC46          <---------ARR11(3) ------ZAT2<---------ANAC58          --------->ARR11(3) ---->ARR14(2) <---------DEAR3(2)    <---------ARR14(2)                                     <-------- -->LBD16  <---------DEAR3(1)    --------->LBD16--------->YAB1                 <------NtERF2--------- -LBD16    <---------ANAC58---------->DOF2     <---------ATHB12        <-----------GT1     <---------MYB46(3)   gctgagtttattggcgtcggtcttctcgataaacccgaagatatcgcctatcatcaagactctaatctcatatatactggctgcatagatggatgggtga  19097800                                                                         <---------ARR14(2)                                                                         --------->ARR14(2)                                                                      --------->ANAC58                                                                      --------->ANAC58                                                                 <---------ZAT18                    <---------At4g35610                    <---------MYB46(3)              --------->ANAC46                    --------->At4g35610   <---------ARR14(2)  xxxxxxxxxxxxxxxx>smallRNA(s) <---------DEAR3(1)                    <---------ZAT2        --------->ARR14(2)  --------->ETT(2)          <---------WRKY12             --------->ANAC58            --------->ATHB12  --------->MYB55(2)           <---------ZAT14             --------->ANAC58          <---------TOE2(3)  --------->ALFIN1              <---------WRKY38(1)             --------->ANAC46          <---------TOE1(3) <---------MYB52(1)             --------->ZAT18 -ANAC46  --------->ZAT18         <---------MYB46(3) --------->MYB52(1)  <---------GLK1(2)<---------LBD16 -->GT1 <---------ZAT18  <---------ATHB12<------ZmHOX2a(1)<---------AtMYB61    <----------DOF2   aacgagtcagtgtccacgactcagctaatgactcagtcgttgaggattgggtcaataccggtggtagaccgctcggaatcgctttcggagtccacggcga  19097900  Previous    Next  AGI:  At3g51430.1    Description:  YLS2 (yellow-leaf-specific gene 2); strictosidine synthase. similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G51450.1); similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G51440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49646.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141); contains InterPro domain Six-bladed beta-propeller, TolB-like (InterPro:IPR011042) Range:  from: 19097444    to: 19099089    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version