Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <---------ALFIN1         ----------->TCP11(1)                                       <---------ARR11(3)           <---------MYB46(3)                                     --------->ANAC58              --------->ALFIN1                          <-----------RAV1(1)                ----------->HVH21 ----ANAC58            --------->ATHB12--------->ARR11(3)    <------ZmHOX2a(2)--------->TOE2(3)     < ----ANAC46           <---------YAB5 --------->ANAC58<---------REM1(1)        --------->TOE1(3)   <-- ----ANAC58   <------ZmHOX2a(1)   <------NtERF2    --------->At4g35610<---------PCF2              <--   tccaatggaagtgagaggagtttcttcattgttggaggcaagacctcgacctctgatgaagcgatcacggtgggccaaaaccttgaagtactccaaactt  19070600                 <-----------HVH21           --------->TGA2(2)                ----------->GT1             <-----------HVH21                ------>ZmHOX2a(2)           --------->TOE2(3)              --------->ARR11(3)            <-----------TGA1              <---------RVE1(2)            --------->ANAC46              <---------ARR14(2)           --------->ANAC58              --------->ARR14(2)           --------->ANAC58  <---------ZAT18              <---------ARR11(3)      <---------WRKY18(1) <---------ANAC46     <---------HSFB2a(2)            <---------WOX13(1)   --------->ALFIN1     --------->HSFB2a(2)           <---------ANAC58     ------->MYC3                          ------- ---------MYB52(1)      --------->TOE1(2)  --------->bZIP60(2)                    <---------HSFB2a(2) -------ANAC58--------->GATA12     <---------AtLEC2     <-------MYC3              --------->HSFB2a(2) -------ANAC58<---------GATA12     <---------ANAC58  <---------KAN1    --------->At4g35610 <---------ALFIN1   ccgttttctggcactagatcgtcaaacccaagagtttgcttgactacgtcagagaacatgtggtgaacttcgaagctaaacttcccagaagcctcacatc  19070700                                                                                               <-----                                                                                             --------                       --------->MYB52(1)                                                    --------               <------ZmHOX2a(2)                                                             <-------              --------->ARR11(3)                                                             <-------              --------->RVE1(2)                              --------->YAB1                  --------              <---------ARR11(3)                            <-------TEIL                    ---------            --------->DOF5.7(1)                   <---------ANAC58                          <--------        XXXXXXXXXXXXXXXXXXXXX>MIR840              <---------ANAC46               <----------DOF2   <---------ALFIN1  <---------MYB52(2)           <---------ANAC58 --------->TOE2(3)      --------->AHL20(2) -->GATA12---------->DOF2            --------->ZAT6       --------->TOE2(3)      <---------DOF5.7(1)   tctccaaaccccaaaagatcaaaactaacatagacaataacacaaacacttggcgtgcaacgttcataacttcaatctcgaggcttttccgataaaataa  19070800         ----------->GT1       --------->LBD16                                          --------->ARR14(2)      --------->HSFB2a(2)                                       <---------ARR14(2)      <---------HSFB2a(2)          --------->CCA1(2)            --------->ARR11(2) ----AHL25(3)                    --------->At4g35610            <---------ARR11(2)             <----- ->AHL20(3)              --------->WOX13(2)                   <---------RAP2.6(3)              <----- ->AHL20(2)              <---------WOX13(2)                  <---------ANAC58                 ------- --AHL25(2)            --------->AHL25(1)             --------->ANAC58                     --------->DAG2 --AHL20(3)            --------->AHL20(2)             --------->ANAC58   <------ZmHOX2a(1) --------->DOF5.7(1) ->AHL25(2)            --------->AHL25(3)    --------->ZAT18 <---------ANAC58            ---------->DOF2 >AHL12(2)             <---------AHL20(2)    --------->ZAT14 <---------ANAC46   <---------TOE2(3)<--- -AHL12(2)             <---------AHL25(1)    <---------ZAT14----------------->AGL1<------ZmHOX2a(1)   tacaacttccagagtaaaactctgtttaatttctcagataaacgatgtacactggtacgaatgccgtatttgtaaggagattgaggaaatgaaaaggtca  19070900                                                                                               <-----                                                                                            <--------                                                                                           ------>ZmHOX2a(1)                                                                                         ------>ZmHOX2a(2)                                                                                        <------ZmHOX2a(2)                                                                                       --------->GATA12        --------->KAN1                                                                 <---------GATA12      <---------ANAC58                  <---------KAN1                                 --------->ARR14(2)      <---------ANAC58                  --------->KAN1                                 <---------ARR14(2)    <---------WRKY18(1)        <---------YAB1                                          --------->ARR11(2) ----WRKY38(1)            --------->KAN1<---------KAN4(1)                              <---------RVE1(2) ----WRKY12              --------->ARR14(2)                                            <---------ARR11(2) -->WRKY18(1)         --------->HSFB2a(2)                   <---------AHL20(2)    <----------DOF2<--- ------At4g35610      <---------HSFB2a(2)               ----------->GT1       <---------MYB52(1)<----   acagcttgacttgttcgcattgttccagacatgctgatttgaatgttcgagctaagagttgtttaatcggagtagtagccattactttggatcctcttct  19071000               *TSS               --------->DAG2          --------->TOE2(3)          <---------MYB59                           --------->WRKY12                             <---          --------->TOE1(3)                       <---------At4g35610                           <----        ------->TEIL                              --------->At4g35610                      <---------WRKY12       <---------ARR11(3)                <---------LBD16                  <---------YAB1   <---------ZAT18     --------->ANAC58                  --------->ARR11(2)              <---------MYB52(1)  <---------WRKY45     --------->ANAC58                  <---------ARR11(2)--------->At4g35610               <---------WRKY38(1) ----DOF5.7(1) <---------TOE2(3)      --------->KAN1--------->WRKY38(1)--------->ICU4 <---------MYB52(1) -DOF5.7(1)    --------->DOF5.7(1)  <---------DOF5.7(1)  <---------At4g35610         <-------GAMYB<-- ------DOF5.7(1)               <---------GLK1(2)  <-------GAMYB       <---------RAP2.6(3) <<<<<<<<<<WRKY11 ------DOF2  ---------->DOF2  <------NtERF2--------->LBD16 ----------->HVH21--------->YAB1<<<<<<<<<<WRKY6   ttttcccaagaacctaaaaggttgacgaaggcagagtctcttatccggagggagttgacttctgacattagccgttattaataagtctgttagtcaactc  19071100                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                                                                                             <-------                                                                                             --------                                                                                             <-------                             <---------CCA1(2)                                          =============                           <---------ANAC46                                        <----------DOF2  -                  <----------DOF2                                             <----------DOF2<-------           --------->DOF5.7(1) <---------KAN1                       ------->GAMYB  <---------DAG2   <     <---------LBD16--------->KAN1      --------->ZAT14            --------->MYB46(3)   <------------ -------DOF2      <---------DOF5.7(1) --------->ANAC55(2)          <---------MYB52(2)   ------------- -----DOF5.7(1)   <---------DAG2      --------->ANAC46          <---------WRKY12<-----------GT1     - -------DOF5.7(1)<---------DOF5.7(1)<-----------GT1--------->ARR14(2)      <---------ARR11(3)<-------   tttttttttcggaaaaacccctttattcttcgtatatttcacttaactccctgtattctcttctgttcaacgaacaatttctttacttttctatttcgtg  19071200       --------------->AGL15       <---------------AGL15      ----------------->AG      ----------------->AGL3      ----------------->AGL1  <---------AHL12(2) --------->AHL12(1) <---------AHL25(1) <---------AHL25(3) --------->AHL25(2) <---------AHL25(2) <---------AHL12(2) <---------AHL12(1) --------->AHL20(2) <---------ICU4 --------->AHL12(3) --------->AHL25(1) -------->AHL20(2) ---------ATHB51 ---------AHL25(2) ---------AHL20(2) ---------AHL25(1) -------->AHL12(1) -------->AHL25(3) ---------AHL12(1)                                                                           -------- -------->AHL12(3)                                                                           -------- --ANAC58                                                                                   --------- --->GT1------>ZmHOX2a(1)                                                                   <-------- --ANAC58                                                                                   <-------- ======================MADS_MADS                                                        <---------WOX13(1) -------->AHL25(1)                                                                     <---------WOX13(2) --ANAC55(2)                                --------->YAB1                             --------->WOX13(2) ---------AHL12(3)                         <---------YAB1<---------At4g35610         <---------AHL20(2) ---AGL15   <---------AHL20(2)            --------->AHL20(2)                       --------->ANAC55(2) -->AGL15 --------->WOX13(2)            <---------MYB52(1)  <---------KAN1     <---------DAG2<------- -------->ICU4                         <---------RAP2.6(3)<---------GLK1(2)    <----------DOF2 <----- --ANAC46 <---------WOX13(2)----------->HVH21        <-----------HVH21    <-----------GT1  <---------TOE2(3)   aaataatttcctatttaagtgagataacttctgacattagccgttataataagtctgtcagattatcacgaagtttatacactttatgtaattgatgatt  19071300                <---------ARR14(2)                --------->ARR11(2)   --------->AtLEC2 ->ATHB12       <---------ARR11(2) ->YAB5         --------->ARR14(2) >ICU4          --------->RVE1(2) -YAB5         --------->GLK1(1)                         <-----------GT1       --------->AHL12(2) -YAB1------->TEIL         <---------DAG2--------->DOF5.7(1)               --------->YAB1 --ICU4 <----------DOF2    <----------DOF2      <----------ARF1           <---------ATHB12 ----WOX13(1)  --------->KAN1  --------->ANAC55(2)   --------->ICU4   --------->MYB46(3)   --------->RVE1(2)   gctccatgcactttgacatatccaaaacactttatgtaacaaaaacaggggagacaagattaccactctcaaaccaatgaaaattgttttgcacatcaaa  19071400                                    --------->ANAC58                                <------ZmHOX2a(1)                                    --------->ANAC58                               <------MYB83                                  --------->TOE2(2)                              <--------P         --------->ANAC55(2)      --------->TOE1(2)                         --------->DOF5.7(1)       <-----------GT1       <---------WRKY38(1)                          ---------->DOF2           <    <---------MYB46(3)      --------->WRKY18(1)                         <---------------AGL15       -    --------->MYB52(2)     <-----------HVH21      <---------ANAC58     ----------------->AGL1<------ZmHOX2a(1) ------------>MYB.PH3(2)  ----------->GT1         <---------ANAC58<------ZmHOX2a(1)<------MYB46(1) <-   cgaagtttgttactgaatgaacacaaaatggtcaaaccaaggaaaacatatggcttctgtgattcacaggaaggccaaaagaggtaggagaagtaggagt  19071500  Previous    Next  AGI:  At3g51340.1    Description:  pepsin A. similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G51330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23259.1); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain Peptidase A1; (InterPro:IPR001461) Range:  from: 19067992    to: 19071015    Orientation: Reverse Links:  TAIR  MIPS  AIP    AGI:  At3g51350.1    Description:  aspartyl protease family protein. similar to pepsin A [Arabidopsis thaliana] (TAIR:AT3G51340.1); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G51330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23259.1); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain Peptidase A1; (InterPro:IPR001461) Range:  from: 19071301    to: 19074489    Orientation: Reverse Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.
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