Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <---------YAB1               --------->AHL20(1)                                       <---------AHL20(2)               <---------AHL20(1)                                       <---------AHL20(1)              --------->AHL20(2)                                      <---------YAB1       <------ZmHOX2a(1)          --------->LBD16                                          --------->ARR11(3)     -----------         --------->ANAC58                   --------->YAB1         <---------ARR11(3)    <---------TOE1(3)         --------->LBD16                --------->YAB1            --------->YAB1   <----------DOF2         --------->ANAC58         <------ZmHOX2a(1)              --------->ICU4    --------------->AGL15        --------->HSFB2a(2)     <---------TOE1(2)                <---------YAB1    <---------------AGL15        <---------HSFB2a(2)     <---------TOE2(3)           --------->TOE2(3)<-----------GT1 ------->AHL20(2)               <---------TOE2(2)           <---------ANAC55(2)   --------------->AGL15 --------AHL20(2)          <---------ARR11(3)               --------->ANAC55(2)   <-----------------AGL3 ------>AHL20(2)--------->AHL20(2)--------->YAB1      <---------YAB1  <---------AHL20(2) <---------TOE2(3)   attaataggtcccgaaatatatatagaactatcttaggataatcaaaaatagtattctgataccgtaatgatattatttttactcctttttaaggaaaat  18974900                                                                                           <---------                                                                                 --------->LBD16                                                                                --------->LBD16                                                                                <---------HSFB2a(2)                                                                                --------->ANAC46                                                                                --------->HSFB2a(2)                                                                               --------->HSFB2a(2)                                                                               <---------HSFB2a(2)                                                                           <---------GLK1(1)                                                                    --------->DAG2      =============                                                             ----------->GT1   <---------LBD16                               <---------ICU4              ---------->DOF2 --------->GLK1(1)<------ZmHOX2a(1) >GT1<-----------GT1         <---------AHL20(2)     ---------->DOF2---------->DOF2      ---------->DOF2   tagttattcacattccaccatttatacatataaaaatttcatatatgtaagaaaaaaagaagaaagaaaaaaagcgggtttcccggaatgaaaaggacca  18975000                              <---------At4g35610                              --------->At4g35610                              <------NtERF2                         --------->ALFIN1                       =========================MYC_MYB                       --------->TGA1a  --------->DEAR3(1)                       <---------ANAC58 ------->GAMYB                       <---------ANAC58--------->MYB46(3)                       <---------bZIP60(2)                       <---------TGA1a --------->DEAR3(2)                       <---------O2   <---------At5g28300                       --------->O2  --------->MYB52(1) ----------->GT1 <---------YAB1      <-----------GT1 -ID1         <---------AHL20(2)  --------->YAB1           --------->YAB1                         --- ================================bZIP_DOF       --------->AHL20(2)--------->CCA1(2) ----------->GT1   agagagaaaaatccattttatgctaacgtggcagcataataaccgcccgattatatatcaacgataagagatgaattgttttcattttgtaacaacaaaa  18975100                               <---------HSFB2a(2)                               --------->HSFB2a(2)                              <---------LBD16                            <---------ARR14(2)                            --------->ARR14(2)                            <---------ARR11(3)                            ------------------------>ANAC81                            --------->ARR11(3)                         <---------------AGL15                         --------------->AGL15                        ----------------->AGL1                        <-----------------AGL1                  <---------AHL20(2)               --------->AHL20(1)                                                         --------->AHL20(1)               <---------AHL20(2)                                                         --------->AHL20(2)              --------->YAB1--------->GLK1(2)                                             <---------AHL20(2)              --------->AHL20(2)                    <---------MYB52(2)                   <---------AHL20(2)              <---------AHL20(2)----------->GT1  <----------ID1      --------->CCA1(2)   --------->AHL20(2) ------>TOE1(2)<---------AHL20(1)            ---------->DOF2<---------ATHB12 <------ZmHOX2a(1)     <-   catgagagaaacaaaattatatttttgcaaaatctggaaaaacaaaacaaagaaacaaacaaatgaagaagagatgagaggagacagagaattaaattag  18975200                                                 <---------ANAC58                                                 <---------DEAR3(1)                                                 <---------ANAC58                                                 <---------ANAC46                                                --------->ATERF1(1)                                                <------NtERF2                                               ------>NtERF2                                               <---------RRTF1(1)                                               <---------RAP2.3(1)                                               <---------ERF1                                              <---------ANAC46                                              <---------RRTF1(2)                                              <---------RRTF1(3)                                              <---------DREB2C(2)                                              <---------RAP2.3(2)                                              <---------RAP2.6(2)                                       --------->ARR11(3)                                       <-----------HVH21                                     --------->MYB59           --------->ANAC58                                     <---------TOE2(3)    <---------ZAT18                                    <---------ICU4<-------GAMYB--------->ANAC58                                 --------->YAB1<---------ORA47(2)          <---------AHL20(2)    --------->At4g35610--------->CCA1(2)      <---------DEAR3(1)           --------->AHL20(2) --------->At4g35610  --------->ARR11(3)      <---------RAP2.3(3)     <---------YAB1        <<<<<<<<<TBF1 -----ZmHOX2a(1)      <---------ARR11(3)     --------->RAP2.6(3) ---------->DOF2         <<<<<<<<<TBF1   aggagcagaagagagagagagagagatatagagattaataaggtcatggcggcgttgcagagcgcaagaaagatgatttaaatctctcttcttcttcttc  18975300                                                 --------->ANAC58                                                 --------->ANAC58                                            --------->At1g77200         <---------GLK1(2)                                            <---------ETT(1)        <---------At4g35610       <---------ARR11(3)                  --------->DEAR3(2)<----------DOF2       --------->ARR11(3)                 --------->SPL7    <---------ANAC58                  -------      <---------CCA1(2)                 <---------SPL7      <---------ANAC58     --------->DAG2    --------->ANAC55(2)  *TSS        <------------------SPL14<---------DAG2     ---------->DOF2   cttcttacatatctctgtgtgtttcttaaatactctctctctcgtaccgacaaacaagttttgctttttcatcagagtctcaaaaagctattccaacttc  18975400                                                        ------>ZmHOX2a(2)                                                       --------->CCA1(2)                                                       <------ZmHOX2a(2)                                                      --------->ARR11(3)                                                      <---------AGP1                                                      <---------ARR14(2)                                                      --------->ARR14(2)                            <                                                      <---------ARR11(3)                           <-                                                      --------->AGP1                               --                                           <---------GLK1(1)                                       --                                           --------->GLK1(1)<---------ZAT6                         <-                                ---------->DOF2 ===============HOX2a_HOX2a                         <-                             <---------MYB59--------->ARR14(2)                                    <--   --------->ANAC46          --------->TOE2(3)  ------>ZmHOX2a(1) ---------->DOF2             ------- -->TOE2(3)  --------->LBD16 --------->TOE1(3)  ==============HOX2a_HOX2a                     -------   aatacactacaaacccagagaatgaattcaacctaaaaaccctagaaatcctctaagatctagagtgagaaagttagagtgtatagaactacaaaacata  18975500                                                                      <-------GAMYB                                           <------MYB83              --------->MYB111(2)                                           <---------ANAC58    <------MYB46(1)                                           <---------ANAC58    <---------MYB46(3)                                           <------MYB46(1)     <------MYB83                                          --------->MYB55(2)  <---------DEAR3(1)  <----------DOF2                         <---------MYB46(3)  --------->ALFIN1 ------>ZmHOX2a(2)                     --------->MYB52(2)     <---------AtMYB61 ------ZmHOX2a(2)                    <--------P           <---------ANAC46 <---------ANAC58 ----------ARR10                   <------MYB46(1)    <-------GAMYB<-------GAMYB ------->ARR11(3)                  <------MYB83     <---------ANAC46 <---------MYB46(3)  <------NtERF2 ------->ARR14(2)                  <---------MYB46(3)<---------MYB46(3)    <---------ANAC58 --------ARR11(3)              --------->ATHB12   <---------MYB46(3)<--------P          --------->LBD16 --------ARR14(2)             <---------YAB1     --------->ALFIN1 --------->MYB55(2)   <---------ANAC58 ----ZmHOX2a(1)             <---------ANAC58     <---------AtMYB61<---------MYB46(3)   <---------ANAC58 -->TOE2(2)                 <---------ANAC58  <---------MYB46(3) <---------AtMYB61    <---------LBD16 -->TOE1(2)        ---------->ID1<---------WOX13(1) <---------AtMYB61--------->MYB55(2)<---------ANAC46   ggatctttggttttgggttttgttccattttcttgattggttagtgggtgagtggtggttatgggtggtggttgttgtcttggtgaatggcggggttttt  18975600                           --------->ALFIN1                        <---------ANAC46                        <---------DEAR3(1)                       <------NtERF2                                           ----------->RAV1(2)                       --------->ATERF1(1)                                    ------>NtERF2                     <---------DEAR3(1)                                       --------->LBD16                     --------->ALFIN1                                        <---------ALFIN1                    <------ZmHOX2a(1)                 <---------LBD16        --------->DEAR3(1)                    --------->ATERF1(1)            ===============================HOX2a_HOX2a                  --------->ALFIN1         ------->GAMYB--------->LBD16    <---------ATERF1(1)                 <------ZmHOX2a(1)        --------->MYB46(3)               ------>ZmHOX2a(1)            <---------ANAC46             --------->ANAC58          --------->GLK1(1)            --------->ALFIN1             --------->ANAC58    ==============================RAV          <---------MYB46(3)      ----------->GT1  ============================HOX2a_HOX2a          --------->MYB55(2)  --------->ALFIN1     <------ZmHOX2a(2)      <---------ALFIN1  <--------         <---------AtMYB61 <---------DEAR3(1)     <---------ARR11(3)<---------ARR14(2)      <--------         --------->ALFIN1 <------NtERF2--------->MYB46(3)    ----------->RAV1(1)           <---------HSFC1(2)         <---------DEAR3(1)<---------AtMYB61      --------->ARR11(3)--------->ARR14(2)--------->YAB1      <---------DEAR3(1)--------->ALFIN1------->GAMYB--------->MYB52(1) ------>ZmHOX2a(1)  --------->HSFC1(2)   ctcgctagacggtggtggaggaggaggcggaggtggaggtaacaaccaagaagatcaccggagcaacacaaatcctcctccgcctgtatcagaagcttgg  18975700                             --------->ANAC58                           XXXXXXXXXXXXXXXXXXXX>MIR2112-5P                       --------->ANAC58                       --------->ANAC58                       --------->ANAC46                     ---------->DOF2                 --------->ANAC58                     <---------DOF5.7(2)             --------->ANAC58                   --------->DOF5.7(2)         --------->ANAC58                  --------->TOE1(3)            --------->ANAC46                  --------->TOE2(3)            --------->ANAC58                <---------TOE2(3)          --------->DOF5.7(2)                <---------TOE1(3)         --------->TOE2(3)            --------->ANAC46               --------->MYB52(1)         --------->TOE1(3)------>ZmHOX2a(1) <----------DOF2 -ANAC58    --------->TOE2(3)--------->ANAC58<---------DOF5.7(2) <-----------HVH21 -ANAC58    --------->TOE1(3)--------->ANAC46---------->DOF2     --------->TOE2(3)<------ZmHOX2a(1)   ctctggtatagaaaccctaacgttaacgcaaacgcaaacacaaacgttaacgcaaacgctccttcttcgtcaaacgctgctttaggaacacttgagttat  18975800  Previous    Next  AGI:  At3g51060.1    Description:  STY1 (STYLISH 1). similar to SHI (SHORT INTERNODES), transcription factor [Arabidopsis thaliana] (TAIR:AT5G66350.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45842.1); contains InterPro domain Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); contains InterPro domain Protein of unknown function DUF702 (InterPro:IPR007818) Range:  from: 18975325    to: 18977385    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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