Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
----------------->
AG
----------------->
AGL1
=============================================================================
MADS_MADS
--------->
MYB46(3)
--------->
ANAC46
--------->
ANAC58
<---------------
AGL15
--------->
ANAC58
<-----------------
AGL1
------>
MYB83
--------->
DAG2
<---------
ANAC58
------>
MYB46(1)
<---------
ANAC58
<------
<---------
ALFIN1
<----------
DOF2
<------
--------->
MYB46(3)
--------->
ZAT18
---------->
ID1
------->
TEIL
--------
TaNAC69(2)
---------->
DOF2
<-----------
GT1
<---------
YAB1
gcaaaacccacccaatttcccaaaagtgttcacaaatgttcttaccacaaatactactccatatttttctctttgcttccccatttatgaaactcacttt
18583300
--------->
ALFIN1
<---------
TOE2(3)
--------->
ANAC55(2)
--------->
YAB1
<---------
AHL20(2)
<---------
ATHB12
--------->
AtMYB61
--------->
AHL20(2)
<---------
ZAT18
<---------
ANAC58
--------->
AHL20(1)
--------->
ZAT14
<---------
ANAC58
----
DOF2
<---------
AHL20(1)
<---------
ZAT6
<---------------
AtSPL8
--------->
ATHB12
---
DAG2
--------->
YAB1
<-----------
RAV1(1)
<---------
ATHB51
--------->
ANAC46
atagttatcccataataaattagtcatgtgttgctcttagtgttctcaataatgtagtacttgcatccgaaaccaaaactattggaagtttagaagtaga
18583400
--------->
ATHB12
--------->
ATHB51
---
<---------
ICU4
<----
<---------
ARR11(3)
<------
--------->
ARR11(3)
--------
<---------
AHL20(2)
---------
--------->
YAB1
--------->
YAB1
<---------
LBD16
--------->
ICU4
<---------
YAB1
--------->
KAN4(2)
--------->
MYB52(1)
--------->
AHL20(2)
<----------
DOF2
--------->
KAN4(1)
<----------
ID1
<---------
ATHB12
--------->
AHL20(2)
<----------
DOF2
<----------
TaMYB80
--------->
ANAC58
<---------
ATHB12
--------->
ICU4
<---------
KAN4(1)
--------->
ANAC58
--------->
WOX13(1)
<---------
YAB1
<---------
KAN4(2)
acatagaacttagaagaagccaaaaaaaccaatggttttgtcaattatcaaattaatatcattattgggcctttatggcccattagtgaatattccggta
18583500
--------->
ZAT6
--------->
MYB52(1)
<---------
ZAT18
<----------
ID1
--------->
YAB1
--------->
ANAC58
------>
TOE2(3)
--------->
ANAC58
---
TEIL
<---------
ZAT14
---------->
DOF2
---
MYB52(1)
--------->
ZAT14
--------->
ANAC58
<<<<<<<<<<<<<<<
->
LBD16
--------->
ZAT14
--------->
ANAC58
---------->
DOF2
---
------>
AtSPL8
<---------
ZAT14
--------->
WRKY18(1)
--------->
ATHB12
<-------
cattaatactgagcactacaatggaagaaaatgaccatggctatgttgaaggtcaaactcaaggaaagcaacgaattagtggaataaagcccattgggcc
18583600
<---------
GLK1(2)
<---------
ARR11(3)
--------->
ARR14(2)
--------->
ARR11(1)
--------->
LBD16
<---------
ARR14(2)
<------
NtERF2
--------->
ARR11(3)
<------
NtERF2
<---------
At4g35610
=============================
--------->
TOE1(2)
<---------
HSFB2a(2)
--------->
At4g35610
---------->
DOF2
--------->
TOE2(2)
<---------
ANAC46
--------->
ZAT14
--------->
ANAC58
<<
LFY
<------
NtERF2
<---------
ZAT14
--------->
ANAC58
------>
MYB52(1)
<---------
ZAT18
--------->
WRKY38(1)
--------->
AHL20(2)
---
ID1
<---------
RAP2.6(2)
<---------
MYB46(3)
--------->
TOE2(3)
----------->
GT1
aaacgtatgagaaaaaatggtggcctcgaaggtgagagttgttgactacagtccgcagaaaaaacattaaaaacgaaagatactgaaaaaaaaaaaaaaa
18583700
--------->
TOE1(3)
-
----------->
HVH21
--------->
TOE2(3)
<-----
--------->
ALFIN1
--------->
HSFB2a(1)
------
<---------
ANAC46
------->
TEIL
<<<<<<<<<<<<<<<<<
LFY
<---------
DEAR3(1)
<---------
ANAC58
<-----------
ARR10
--------->
ANAC58
<---------
LBD16
<---------
ANAC46
<---------
MYB59
--------->
ANAC46
--------->
ATERF1(1)
<---------
ANAC58
--------->
MYB52(1)
--------->
ANAC58
<---------
MYB52(1)
-
--------->
O2
--------->
ANAC58
<---------
MYB59
----------->
RAV1(1)
<-----------
HVH21
-
--------->
TGA1a
----------->
HVH21
------>
MYB46(1)
------->
GAMYB
--------->
ZAT2
--------->
LBD16
<---------
O2
*
TSS
--------->
ANAC58
<---------
DAG2
--------->
AtMYB61
<---------
ZAT2
------>
NtERF2
===========================================
MYC_MYB
--------->
MYB46(3)
--------->
ANAC58
<------
NtERF2
<---------
TGA1a
--------->
At5g28300
------>
MYB83
--------->
ANAC46
--------->
ANAC58
<---------
LBD16
==========
bZIP_DOF
<-----------
HVH21
------->
GAMYB
--------->
ARR14(2)
<----------
ID1
<---------
ATERF1(1)
ctcacgagtcgtgtgtga
ctcggtgactcgcgactcaaccgaaccttacccaatactcaaccacacaaca
atgggccaagctccgtcgtctccggcggaa
18583800
<---------
HSFC1(2)
--------->
ANAC46
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<-------
TEIL
---
--------->
SPL7
--------->
ATHB12
<---
------->
TEIL
--------->
HSFB2a(2)
<------
--------->
TOE1(2)
--------->
ARR14(2)
<------
<---------
SPL7
<---------
GLK1(2)
--------->
At5g28300
--------->
TOE2(2)
--------->
LBD16
<------
MYB46(1)
--------->
ANAC58
--------------->
AtSPL3
--------->
At4g35610
<------
MYB83
--------->
ANAC46
-------->
MYB52(1)
<---------
LBD16
--------->
ATHB12
--------->
ANAC58
----
ARR14(2)
<---------
WRKY38(1)
<---------
ARR14(2)
<---------
At5g28300
--->
ARR14(2)
<-----------
HVH21
--------->
GLK1(2)
<---------
LBD16
----->
MYB46(1)
<----------
DOF2
--------->
MYB52(1)
<---------
ANAC58
<-----------
HVH21
----->
MYB83
--------->
HSFC1(2)
<---------
WRKY12
<---------
ANAC58
<---------
YAB1
-------
ccaaacgtacgcgatacttctttatgtctatggtcaccggaatttctcgattgcgaatcgattggtttcgaagacggagattacgatttcacggcaaatc
18583900
<---------
ARR14(2)
--------->
ARR14(2)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ETT(2)
--------->
ATHB12
<---------
GLK1(1)
<------
NtERF2
----->
P
<----------
DOF2
--------->
GLK1(1)
<---------
MYB46(3)
--
--------
GT1
--------->
ARR11(3)
<------
NtERF2
------>
NtERF2
--
---
ARR14(2)
<---------
ARR11(1)
--------->
LBD16
<---------
DEAR3(1)
<--
-----
ARR10
<---------
ARR11(3)
<---------
ANAC46
--------->
MYB52(1)
---------
-->
ARR14(2)
<---------
CCA1(2)
<---------
LBD16
<---------
CCA1(2)
<---------
WRKY38(1)
taccagacgattgcctcgctcatatctttcaatttctcagtgccggagatcggaaacgatgctctcttgtatccaaacggtggctattagtcgacggaca
18584000
<---------
ARR14(2)
<---------
ZAT18
<-----------
GT1
------->
TEIL
--------->
ZAT2
<-----------
HVH21
<-----------
GT1
--------->
LBD16
<-----------
TGA1
<---------
ANAC58
--------->
ANAC55(2)
--------->
YAB1
<---------
ANAC58
<---------
ANAC58
------->
ARR14(2)
----------->
HVH21
<----------
DOF2
<---------
ATHB12
---------->
DOF2
------->
GLK1(2)
--------->
ANAC55(2)
<-----------
GT1
--------->
ARR11(3)
<---------
ANAC58
-------
GLK1(2)
<---------
ANAC55(2)
--------->
GLK1(2)
--------->
ARR14(2)
<---------
ANAC55(2)
<-
-->
HVH21
<---------
MYB52(1)
<---------
GLK1(2)
<---------
CCA1(2)
----------->
GT1
<----------
DOF2
gaatcgtcaccgtttatcacttgacgctaaatctgagattctccctttcttaccatgtatcttcaatcgattcgattccgtaacaaagctcgctcttcgt
18584100
<---------
At4g35610
<----------
DOF2
------>
ZmHOX2a(2)
<---------
RVE1(1)
--------->
ARR14(2)
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ARR14(3)
--------->
GLK1(2)
<---------
ARR14(3)
------->
TEIL
--------->
ETT(2)
--------->
ARR11(3)
<---------
CCA1(2)
<---------
MYB46(3)
<---------
ARR14(2)
<---------
ANAC46
<-------
GAMYB
<---------
ARR11(3)
<---------
ANAC58
<---------
MYB46(3)
--------->
ARR14(2)
<---------
ANAC58
<---------
ANAC46
--------->
GLK1(1)
<---------
MYB46(3)
--------->
ANAC58
<---------
GLK1(1)
<----------
DOF2
--------->
MYB52(2)
--------->
ANAC58
------>
ZmHOX2a(2)
------->
TEIL
<-------
TEIL
<---------
YAB1
<-------
TEIL
--------
YAB1
--------->
At4g35610
--------->
YAB1
<---------
MYB52(1)
--------->
WRKY18(1)
---
tgtgatcggagatcttttagcttaagcgatgaagctttattcatagtctcgattcgttgctcgaatctgattcgagtcaagcttcgtggttgtcgagaga
18584200
Previous
Next
AGI:
At3g50080.1
Description:
VFB2 (VIER F-BOX PROTEINE 2); ubiquitin-protein ligase. Identical to F-box/LRR-repeat protein 16 (FBL16) [Arabidopsis Thaliana] (GB:Q9SN10); similar to SKIP2 (SKP1 INTERACTING PARTNER 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G67250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71916.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553)
Range:
from: 18583719
to: 18585497
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version