Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <---------DAG2                                                <----------DOF2                                               <---------DAG2                                              <------NtERF2              <---------ANAC58               ------>NtERF2              <---------TGA1a               --------->RAP2.3(3)              <---------O2                  --------->RAP2.3(2)              --------->ANAC55(2)           --------->RAP2.6(2)              <---------ANAC46              --------->DEAR3(1)              <---------ANAC55(2)          --------->ATERF1(1)              <---------bZIP60(2)          <------NtERF2              <---------ANAC58             --------->DEAR4(2)            <---------TGA2(2)              --------->ERF1           ----------->HVH21               --------->ORA47(2)           ----------->TGA1                --------->RAP2.3(1) <---------ARR14(2)                       <---------ATERF1(1)                                 <------ <---------ARR11(3)                       <---------RAP2.3(1)                     <---------ANAC58 --------->ARR14(2)       --------->ZAT18<---------DEAR3(1)                       <---------ANAC58 ------->TEIL =================================bZIP_DOF               <<<<<<<<<TBF1         <-------- --------->ARR11(3)      <------ZmHOX2a(1)<---------ORA47(2)   <-----------GT1    --------->ANAC55(2) ---------CCA1(2)------->TEIL       ---------->DOF2      <---------YAB1           <---------ANAC55(2)   ctgtatcttgggtctgacgtatcacgaggacacaactcgaaagtcgccgcctttttcttatcaataaacttcttcttccccattacttactaattcacac  18545000                                                                                                   --                                                                    <---------ATHB12               <-                                           --------->ARR11(3)      --------->ANAC58                --                                     --------->CCA1(2)             --------->ANAC58        ------>ZmHOX2a(1)                                    <---------ARR11(3)    <-----------HVH21              <---------ICU4 ---ALFIN1         --------->At5g28300     <---------ARR11(3)     --------->WOX13(1)     --------->YAB1 ---GT1           ----------->GT1   --------->ARR11(3)   --------->ANAC46       <---------YAB1     <-   cttcttaagggttttgcaaactgtaaaacaattacgaagatataagatgtctaacttctaagtcacagcaatcaactagactatgtttcaatcctgacta  18545100                            --------->ANAC46                            --------->ANAC58                            --------->ANAC58                --------->YAB1                                                         <---------TOE2(3)               <---------YAB1                       <----------DOF2                  <---------AHL20(2)   ----------->GT1     --------->YAB1       ----------->GT1                         --------->AHL20(2) ------->AHL20(1)     <---------ATHB12      <----------ID1                          --------->AHL20(1) --------AHL20(2)   --------->WOX13(1)    --------->DAG2    --------->HSFB2a(2)     <---------AHL20(2) ------->AHL20(2) <---------YAB1         --------->DAG2     <---------HSFB2a(2)     <---------AHL20(1) --------AHL20(1)--------->TOE2(3)      ---------->DOF2  --------->ZAT6      --------->ZAT6   ataaaatgtaaatttttatcatcaatcaacacgaaaacatcgaaaagggagaaactttaagtctagaaacgattcaaaaacactaatttaatgaaattga  18545200                                                                                                -----                                                                                               ------                                                                                              -------                                                                                              -------                                            --------->At4g35610                       --------->ALFIN1      ----------->RAV1(2)       <------NtERF2                          <---------RVE1(1)     ------>NtERF2     -------->P                --------->LBD16                        --------->ARR11(3)    <-------- --------->At4g35610          <---------ANAC46                        <---------GLK1(2)     --------- <---------HSFC1(2)           <---------DEAR3(1)         *TSS         <---------ARR11(3)   --------->MYB46(3) --------->HSFC1(2)          <---------LBD16<---------At4g35610<-------GAMYB       <---------TOE2(3)   agaagcttacctgaagagtttgagagagagaggcggagaacaatgcagatgaagaacaaaaacgctgttgaagatttttagttttagggtagagccaccc  18545300 --------->ANAC58 --------->ANAC46 --------->ANAC58                <----------DOF2 ---->ANAC46                    <---------ANAC58 --------->ANAC46                       <---------AHL20(2) --->MYB46(3)                   <---------ANAC58 --------->ANAC58                    <---------AHL20(2) -->ANAC58         <-----------GT1           --------->ANAC58                       --------->AHL20(2) -->ANAC58   <---------TOE1(3)  <---------ANAC46 --------->ANAC58                   <---------AHL20(2) -ALFIN1<---------YAB1   ---------->DOF2<---------ZAT6 ---------->DOF2      --------->ANAC58 >DEAR3(1)   <---------TOE2(3) ------>NtERF2 --------->ANAC58<------NtERF2  --------->ANAC58    <----   aaaacgcatcattttagggtttaaccaaaacgctgcgtttttgtgttaagcaagccaaaacgcgtcgtttttggcaacaagtcaaattaaatatttgttt  18545400                                                      --------->ANAC58                                                      --------->ANAC46    ------>MYB83                                                   <---------ABI4(2)      ------>MYB46(1)                                                   --------->ZAT14      <---------MYB46(2)                                                   <---------ZAT14      <---------MYB59                                                   --------->ZAT18      <---------MYB111(1)                                           --------->LBD16             --------->ANAC58                                      <---------At5g28300              --------->ANAC58                    <---------------AGL15 *TSS     <---------ZAT18     --------->ANAC46                    --------------->AGL15<---------LBD16           --------->AtLEC2          <-------   --------->HSFB2a(2)              --------->MYB46(3)--------->ANAC58------->TEIL         <---------TOE1(2)   <---------HSFB2a(2)   ---------->DOF2--------->DEAR3(1)  ----------->GT1               ------>ZmHOX2a(1) -----AHL20(2)     ----------------->AGL2--------->LBD16    <---------MYB46(3)    <<<<<<<<<TBF1   tatttccataactcagtgtatgccactaaaagaaataatccaccgcgggagagtgcaccgaatggttacatgcacctaatcttcttcttctcctactttc  18545500                                                <---------DEAR3(1)                                               <---------MYB52(1)                                              <-------GAMYB                                             <---------ANAC46                                             --------->DEAR3(1)                                            <------NtERF2                                --------->LBD16                                         --------->ZAT18                               <---------LBD16                                         --------->SPL7                               --------->MYB52(1)                                      <---------ANAC58                               <---------ALFIN1                                      --------->ANAC55(2)                      <---------ANAC58                                      <---------ANAC55(1)                      <---------ANAC58                                      ================MYC_MYB                 <-------TEIL                                  ------>ZmHOX2a(2) <---------ZAT18          --------->ALFIN1                      --------->ANAC58<---------ANAC46                      --------->TOE1(2)                      --------->ANAC46<---------TGA1a                       --------->TOE2(2)                      --------->ANAC58<---------ANAC58                     <---------ANAC58    --------->At5g28300         --------->ARR11(3) <---------ANAC46        <---------ANAC58   <---------DEAR3(2)--------->ZAT18  --------->TGA1a                     <---------TOE2(3)<---------ARR14(2)  --------->ANAC46   <---------ZAT18  <---------ANAC55(2)                <---------DOF5.7(2)    <---- ---DOF2      <---------YAB1    <---------ARR11(3)<------NtERF2        --------->DOF5.7(2) --------->ARR14(2)   ttcgacggtacctgttgttattgtgcgccatcttgatcttacgtgcgccgttggcgcattctcttataccaccattaacgtgcgtcaacaccggaaccgt  18545600                                                            ------>ZmHOX2a(2)                                                           --------->GLK1(1)                                                           <---------GLK1(1)                                                           <------ZmHOX2a(2)                                                          <-----------ARR10                                                          <---------AGP1                                                          <---------ARR14(3)                                                          --------->ARR14(3)                                                          <---------ARR14(2)                                                          --------->ARR14(2)                                                          --------->ARR11(3)                                 <---------ANAC46         <---------ARR11(3)      ---------->DOF2                             <-------GAMYB  <---------GLK1(2)             <---------MYB52(1)                            --------->MYB52(2)     --------->ANAC58      <-----------HVH21                            <---------MYB46(3)     --------->ANAC58      <-----------TGA1                       <-------TEIL         <---------ARR14(2)          --------->DEAR3(1)           <---------ANAC46 ------>ZmHOX2a(2)--------->GLK1(2)          --------->DREB2C(2) -----MYB52(1)    <-----------RAV1(2)       --------->ARR14(2)   <----------DOF2--------->ETT(2)<----   tgaatcagacgttactggtatcaggttcgatcgttgcctcgataccgattctctcgccaagatctctctttccaccgtcatgtcgaaagctcgtgtttat  18545700                      <---------TOE2(3)                     --------->MYB52(1)                   --------->AtMYB61               ----------->HVH21         ------->TEIL              =================HOX2a_HOX2a                           ================================              --------->DEAR3(2)      <---------ANAC55(2)            ------>ZmHOX2a(2)        --------->ANAC55(2)           <---------YAB1                <------ZmHOX2a(2)       <---------TOE2(3)   --------->ATHB12            <---------ANAC46                            ==       <---------TOE1(3)<------ZmHOX2a(1)--------->GLK1(2)         <---------ARR11(3)          ------      <---------DOF5.7(2) <---------YAB1<---------GLK1(2)          --------->ARR11(3)   --------->YAB1    --------->DOF5.7(2)--------->ICU4 --------->ANAC55(2)--------->ALFIN1              <---------YAB1 -------GT1   ------>ZmHOX2a(2)      <---------------------WRI1<--------P           --------->ICU4 <-   accgatgttaacgtgatccgacctaaggattattgggattacgaatctctcaatgttcagtgggggtaagatcgtatttttcgaaaattatgaaaaccct  18545800                                 ----------->GT1                                 <---------REM1(1)                          ------>ZmHOX2a(2)                        <---------ARR14(2)                        --------->ARR14(2)                        <---------AGP1                 <---------AHL20(2)                       <---------ANAC58                 --------->AHL20(1)                       <---------ANAC58         ----------->GT1--------->ARR11(3)               <---------At4g35610                        <       <---------ATHB12 <---------ARR11(3)               --------->At4g35610                        -  <---------At4g35610  <---------CCA1(2)                 --------->ZAT2                             < =====HOX2a_HOX2a--------->AHL20(2)                      --------->STY1(2)                          - ================================HOX2a_HOX2a             <---------ZAT2                             - --->TOE1(2)    --------->AHL20(2)             <---------DAG2<------NtERF2                   <------ZmHOX2a(1) -----ZmHOX2a(1)<---------AHL20(2)             <----------DOF2                <---------AHL20(2) ----   aggaagctaatcagttaaaaaaattggatcttgtaatgtagaaattgagctttttgtctagctggcgatgttcttggtttttaatctggttttgaggaga  18545900  Previous    Next  AGI:  At3g49990.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO61051.1); contains InterPro domain Low temperature viability protein (InterPro:IPR007307) Range:  from: 18543308    to: 18545257    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g50000.1    Description:  CKA2 (casein kinase II alpha chain 2); kinase. Identical to Casein kinase II subunit alpha-2 (CKA2) [Arabidopsis Thaliana] (GB:Q08466;GB:Q9SN18); similar to CKA1 (CASEIN KINASE ALPHA 1), kinase [Arabidopsis thaliana] (TAIR:AT5G67380.1); similar to protein kinase CK2 alpha chain [Nicotiana tabacum] (GB:CAD27342.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 18545442    to: 18547953    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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