Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       --------->LBD16    --------->ANAC46                           <-------TEIL   <---------LBD16          ------>NtERF2    <---------GLK1(2) --------->AtMYB61          --------->LBD16  --------->ARR14(2) --------->TOE2(2)        <---------LBD16    <---------ARR14(2)                   <---------At4g35610 ----------ARR10     --------->MYB46(3)    --------->LBD16           --------->AHL20(2) -->ANAC58        ------->GAMYB  --------->WOX13(1)               --------->WOX13(1)         -------- -->ANAC58       <---------MYB52(2)      <---------LBD16   <---------CCA1(2)      --------->At4g35610 >At4g35610      --------->MYB46(3)<---------ATHB12     ------>ZmHOX2a(1)      ---------->DOF2   aaacctccgcatcaatacaacgaacaactccggctcaatcaactccggattcgtcttcctcatctcttcaattaaaccccaaacagctccaaattgtcgc  18458200                             <---------ALFIN1                             ---------->DOF2                     --------->ATHB12                         --------->MYB52(2)            <--------                <---------YAB1 --------->ANAC46            <---------ANAC58    --------->GLK1(2)   <-           --------->YAB1  <-----------GT1       <-----------GT1 --------->WRKY38(1)        ---------           <---------ICU4<-----------GT1   --------->YAB1  <---------ANAC58   <---------GLK1(2)    -- -->ID1 --------->YAB1 <---------WOX13(1) <---------YAB1<--------P   ----------->RAV1(1)--------->TOE2(3)   attttactaagaatcatcaccattgatttacacacttcatagctatgaaaataaccaggttgcttcgttgcccacagaaagaatctataacctagattcc  18458300                                                                            <---------------AGL15                                                                            --------------->AGL15                                                                           <-----------------AGL1                                                              <---------MYB52(1)                                                      <---------MYB59      ----------------->AGL2                           <---------YAB1            <---------ANAC55(2)   <-----------------AG                          <---------TOE2(2)          --------->ANAC55(2)--------->At4g35610                          <---------TOE1(2)    <------ZmHOX2a(2)       --------->ANAC58         ----- -GLK1(2)          <---------ALFIN1    <-----------HVH21 <---------GLK1(2) ----------------->AGL3 --------ZAT2      --------->ZAT6    --------->LBD16 ----------------->AGL1<-----------------AGL3 <-- >ARR14(2) --------->MYB46(3)      <---------LBD16   ----------->RAV1(2)<---------ZAT2          ----- ------->ZAT2     --------->ZAT14-------->P  --------->At4g35610       --------->ANAC58--------->ZAT6   cagcatcgccacaacgactcaacactcgtatgatcaacccgggtcgcagatcaatacctgattcgttaagagcaagctccaattttggaactctagaatg  18458400                                  <---------LBD16                   <-----------ARR10--------->LBD16                   --------->ARR11(3)     --------->LBD16     <---------HSFB2a(2)    <---------ANAC55(2)  --------->HSFB2a(2)                                         <----------DOF2   <---------LBD16 --------->ARR14(2)                                         ------->GAMYB <---------ARR14(2)<---------ARR14(2)                                       ------>MYB46(1) --------->ARR14(2)<---------ARR11(3)    <---------ARR14(2)                 -------->P ---->YAB1        <---------CCA1(2)--------->DEAR3(1)                       ------>MYB83       <----- -------YAB1  ----------->GT1  <---------ZAT14                           --------->MYB46(3)   <------ ------>GT1--------->GLK1(2)  <-----------HVH21            <---------LBD16--------->AtMYB61  <-------   gtgattccgcaaaattctgtaaatcttctcgacttcaccggcgaattcatcttcatgcttctctggacaaactaaaccaaccccattctttctctctgtt  18458500                                                                      <---------ANAC46                                                                      <---------ANAC58            <---------MYB52(1)                                        <---------ANAC58    --------->ANAC58                                            <---------GLK1(2)    --------->ANAC58                                         --------->HSFB2a(2)    --------->ANAC46                                  <------ZmHOX2a(2) --------->TOE1(2)                      <----------DOF2      <---------HSFB2a(2) ----MYB52(1)                          <---------DAG2--------->ARR11(3)                     <-------- -GAMYB    --------->TOE2(3)          --------->HSFB2a(1)    <---------HSFC1(1)          <---------At4g35610 ----RAV1(1)<---------YAB1            <---------HSFB2a(1)    --------->HSFC1(1)  ----------->GT1   gattctacgaaatcgttattgagaactcttgaaatatggaaccttttacaaatgagatcaattctagaatttgcttgagaagatggttttttgctgatga  18458600                                  --------->TGA1a                                  =================================bZIP_DOF                           <---------CCA1(2)                          ------->TEIL                  <-----------ARR10                  --------->GLK1(2)                       <---------ARR14(2)                  <---------ARR14(2)<---------ZAT14     <----------DOF2                  --------->ARR14(2)--------->ZAT14    <---------ANAC46  <------ZmHOX2a(2)    --------->ANAC46               <------NtERF2 --------->ARR11(3)    --------->ANAC58              ------>NtERF2 <---------ARR11(3)    --------->ANAC58             <---------DEAR3(1)           <----------DOF2 -At4g35610      <---------GLK1(2)--------->ANAC46--------->MYB52(1) ---------->DOF2 <-----------GT1-   gaagatcaacaatggtagagaatctacgcatctctcacttcacactctaaaacgacggcgttttcgtcttataaagtcttctccttttctctgttttgca  18458700                                       <----------DOF2                         --------->TOE1(3)             ---------->DOF2---------->DOF2                                ---------->DOF2 --------->DOF2          --------->TOE2(3)  --------->ZAT14       <---------WOX13(1)   aatatagcagaaaactaaagccctaaacctaaaagagacaactttcttcactcacagagctatagatgactgatgagaaaagctctatgtttaacagaga  18458800                                                                                               <-----                                                                                               <-----                                                                                               ------                                      --------->AHL20(2)                          --------->ARR14(2)                            ------->MYC3                                          <---------ARR14(2)                            <-------MYC3            --------->MYB52(1)            <---------GLK1(2)                           --------->ANAC46       <---------MYB52(2)   ------>NtERF2 --------->ANAC58                           --------->O2      --------->LBD16           --------->LBD16       --------                           <---------O2<---------AHL20(2)             <---------ANAC46       --------    --------->ANAC46     <---------ALFIN1  <---------LBD16           <---------LBD16 --------->ANAC58   gtttatcagccatagcagaaaactctaccacgttgctcaatttaaaccggagactaacgggtctcactcgttccggcgagaacagaaacgctctcaagct  18458900                                                                                --------->LBD16                                                                            --------->DEAR3(1)                                                                            <---------ALFIN1                                                                           --------->ATERF1(1)                                                                           <---------ZAT2           <   --------->DEAR3(1)                                                      --------->At4g35610    <-- ----ARR11(3)                                                      <---------At4g35610     <--------- ------ARR10                                          --------->MYB52(2)   <---------At4g35610   <--- --->ARR11(3)                                       <---------MYB52(1)    <---------ATERF1(1)<------- ->ANAC58     <-------GAMYB              <---------ZAT14           <---------ZAT2        <---------YAB1 ->ANAC58  <---------At5g28300           --------->ZAT14           --------->ZAT2       --------->ARR11(3)   cttcgccgatgttcaccgttgcacaactctgagaccagaccagtacagtgtctcgttagctattactacagctaggcacctccgtgatactatctttggt  18459000                                                          --------->ANAC58                                                          --------->ANAC58                                                       --------->ARR14(2)                                               --------->ANAC55(2)                                               ============================bZIP_DOF                                               <---------O2      --------->MYB52(2)                       --------->O2     <-------TEIL                              ============================bZIP_DOF -----------RAV1(2)                            --------->TGA1a ---------HVH21                                <---------TGA1a -DOF2--------->ATHB12       <----------DOF2  <---------TOE1(2) <----------DOF2                  <--- ------MYB46(3)              ============================bZIP_DOF     <----------DOF2           <---- --AtMYB61        --------->ARR14(2) <-----------HVH21 <---------ARR14(2)             <---------ZAT18   ggtcaggttcattgctatgcgattcgctctggtttattgtgtcactctcacgtttccaatacgcttctttcgctatatgagagattagggaacttagctt  18459100  Previous    Next  AGI:  At3g49730.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G65820.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71515.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24801.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18453260    to: 18458631    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g49740.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G02010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24800.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71514.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18458773    to: 18461079    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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