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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                  --------->TOE2(3)
                                                                            --------->AHL20(2)
                                                                            <---------AHL20(2)
                                                                           --------->AHL20(2)
                                                                           <---------AHL20(2)
           <---------RVE1(1)                                               <---------AHL20(1)
           <---------CCA1(1)                                            --------->AHL20(2)
          --------->ARR11(3)         ----------->GT1                    <--------ATHB1        ------
         --------->YAB1             <---------TOE2(3)                   <---------AHL20(2) ---------
       <---------TOE2(3)            ----------->GT1                     <---------ICU4    <---------YAB1
      --------->YAB1    <----------DOF2                                 --------->ATHB51<---------ICU4
    <---------AHL20(2)  <---------DAG2                                 --------->ICU4   --------->YAB1
    --------->AHL20(2)  <---------------AGL15                          <---------YAB1  --------->ICU4
   --------->YAB1       --------------->AGL15   ---------->DOF2      --------->YAB1  --------->YAB1
-->GLK1(2)<---------ARR11(3)      ---------->DOF2 ----------->GT1 --------->YAB1<---------AHL20(2)
 
tttctattttaatgatatttttgatgactttattttgtaaaggaaaatatcaaaagttataaactaataacataataatttaattcattaataatcataa  18448400
                                         --------->HSFB2a(2)
           <---------WOX13(1)            <---------HSFB2a(2)
        <---------AHL20(2)   --------->AHL20(1)
        <---------YAB1       <---------AHL20(2)
       <---------AHL20(2)    <---------YAB1---------->DOF2 <-----------GT1
  <---------AHL20(2)         --------->AHL20(2)            --------->MYB52(1)
<----------DOF2    --------->ZAT6    <----------DOF2  --------->AHL20(2)
--->AHL20(2)--------->AHL20(2)    <-----------GT1   ------->TEIL                       <-----------GT1
>YAB1  --------->AHL20(2)   --------->AHL20(2)   <---------YAB1 <---------AtLEC2------>ZmHOX2a(2)
 
attcttttattttaattgaataacacaaaaattttattgactttctaaaagtatgaatcaaataactgcatgaaaattttagatcgcattttacaaattt  18448500
                 --------->YAB1                        --------->GLK1(2)                          --
                <---------YAB1 --------->AHL20(2)     <---------GLK1(2)                           --
               <---------AHL20(2)             --------->YAB1         <---------AHL20(2)           --
               --------->AHL20(2)     <-----------GT1 --------->ARR14(2)                 <---------AHL20(2)
            <---------GLK1(2)  <---------AHL20(2)     <---------ARR14(2)                 --------->AHL20(2)
            <---------ARR11(3) <---------AHL20(1)----------->RAV1(1) --------->AHL20(2) --------->AHL20(2)
 
taaactaatacactagattttaataaacttttaaaaaattttaactgaataacaacagattctatataacatttaaatcacaaaaactctatttaattcg  18448600
                                 <---------ANAC58
                                 <---------ANAC58
                              ------->MYC3
                              <-------MYC2
                              ------->PIF4
                              ------->MYC2
                              <-------MYC3
                              <-------PIF4
                              <-------MYC4
                              ------->PIF5
                              <-------PIF5
                             <---------ANAC55(2)
                             --------->ANAC55(2)
                             <---------ANAC58   <---------AHL20(2)
                             <---------ANAC58   --------->AHL20(2)
          >>>>>>>>>>>>>>>>>LFY------->MYC4  --------->AHL20(1)
     <-----------GT1         --------->TGA1a<---------AHL20(2)                          <---------ARR14(2)
------->ANAC46               <---------TGA1a--------->AHL20(2)         <---------AHL20(2)--------->GLK1(2)
------->ANAC58              ------------>OsbHLH66                     <---------YAB1    --------->ARR14(2)
------->ANAC58          --------->YAB1     --------->AHL20(2)       --------->YAB1      <---------GLK1(2)
 
cacacaaataacatcccactgtatatatcatcacgtgcttgcccaaaaaaattaaaaaataaacgagcccataataaatgggccttgaacagattctaag  18448700
          <----------ID1
         <---------TOE2(3)   --------->ANAC58
        --------->MYB52(1)   --------->ANAC58
      <---------MYB52(2)   --------->MYB52(1)                  <---------HSFB2a(2)
    --------->WOX13(1)  --------->ANAC58                       --------->HSFB2a(2)
  ------------>CBF      --------->ANAC58         <-----------GT1        --------->ARR11(3)
--------->ANAC58      --------->CCA1(2)    <----------DOF2   --------->At4g35610              ------
--------->ANAC58     <----------ID1    <---------YAB1        <---------At4g35610    <----------ID1
 
cccaagtcaattaacgaaaaataagagacgaaacgaaaacttatgactttgtttaccagtcttcttctgaaaacagaacttgcaaatgcgagaaacatac  18448800
                                                                                                  <-
                                                                                              ------
                                                                                             -------
                                                                                             <------ZmHOX2a(2)
                                        --------->AtLEC2                                     <------
                                    ------>NtERF2                                           <-------
                  <---------YAB1   --------->ANAC58           <---------ARR11(3)            --------
                  --------->ICU4   --------->RAP2.6(2)        --------->ARR14(3)   <---------ANAC46
        <-------TEIL               --------->ANAC58           --------->ARR11(3)  <---------At4g35610
    <---------TOE2(3)            --------->At4g35610       --------->HSFB2a(2)    <---------LBD16 --
    <---------TOE1(2)   --------->At4g35610                <---------HSFB2a(2)    --------->At4g35610
----------------------->TaNAC69(2) --------->ANAC46   <---------DAG2      --------->GLK1(1)---------
------>CBF     ---------->ID1------->TEIL             <----------DOF2     <---------GLK1(1)<--------
 
aatctctgaggttcacttgtcactattagatgaatcagacgccatggaagttcaaaacttttcgagaccttctactgaaatctgtagcggagagagatct  18448900
       <---------GLK1(1)
       --------->GLK1(1)
--------ZAT14
>ZmHOX2a(2)
-->GLK1(1)
---GLK1(1)            <----------DOF2
--ARR11(3)       --------->ANAC46                                                                 <-
->ARR11(3)    <---------REM1(2)                                             ------->TEIL       -----
------->ZAT14 --------->ZAT14                           <---------CCA1(2)  <---------CCA1(2)--------
>GLK1(1)     <-----------HVH21 --------->GLK1(1) <---------ZAT18       <---------ANAC46   <---------
-GLK1(1)  <-----------GT1 <---------ANAC46   <-------TEIL        <---------ATHB12  --------->ANAC46<
 
cttcactgggaaatcacttcacgcgctctacgtgaaatccattgtagcttcgtccacttatctctcaaatcacttcgtgaatctctactccaaatgtggt  18449000
                 ------>NtERF2
            <-------PIF5
            ------->MYC3                                                                   ---------
            ------->MYC2                                                              <-------TEIL
            ------->PIF5                                                             --------->CCA1(2)
       --------->ANAC58                                                              --------->ARR14(1)
       --------->ANAC58               >>>>>>>>>>>>>>>>>LFY                          <---------ARR14(2)
       --------->ANAC46       --------->ANAC58                                      --------->ARR11(1)
     ------>ZmHOX2a(1)        --------->ANAC58                                      --------->ARR14(2)
<----------DOF2  --------->LBD16      --------->ANAC58                          ---------->DOF2
-----NtERF2 <-------MYC2     --------->LBD16                                <---------ANAC55(2)
---->ATERF1(1)  --------->DEAR3(1)    --------->ANAC58                      <---------ANAC46--------
->ALFIN1    <-------MYC3 --------->ANAC46                           ---------->DOF2 <---------GLK1(2)
--RAV1(1)<------------OsbHLH66--------->ANAC46              <---------AHL20(2)--------->ANAC46
---------DAG2 --------->ZAT2 <---------LBD16<---------ARR11(3)   <-----------HVH21 <---------HSFB2a(1)
 
cgcctttcctacgcacgagccgcgttctactccacggaagaacccaatgtcttctcttacaatgtaattgtcaaagcttacgcgaaagattcgaaaatcc  18449100
                                                                      <---------At4g35610
                                                                      --------->At4g35610
                                                                    <---------ZAT14               <-
                                                                    --------->ZAT18           <-----
                                                                    <-------TEIL              ------
    --------->ANAC46                                                --------->SPL7            ------
    --------->ANAC58             --------->ANAC46                 <---------SPL7             -------
    --------->ANAC58          -------->P                          --------->ARR14(2)         -------
 <---------ZAT18  --------->ANAC46    <<<<<<<<<SUP            <---------LBD16               <-------
>GLK1(1)   <---------MYB46(3) ------>MYB46(1)                <---------LBD16                --------
->GLK1(2)<-------GAMYB        ------>MYB83               <---------CCA1(2) <---------YAB1   --------
 
atattgcacgccagttgttcgacgaaattccccaaccagacactgtctcttacaatactcttatctcggggtacgctgatgctagagaaacttttgccgc  18449200
--------ATHB12
----RAP2.6(3)
--->LBD16                                        --------->ANAC55(2)
>NtERF2                                         <---------TOE1(3)                               ----
-->ANAC46                              --------->ATHB12                        <---------At5g28300
-->RAP2.6(2)                          <-------TEIL--------->TOE2(3)  --------->ZAT2 --------->REM1(2)
--LBD16                              <--------P <---------TOE2(3)    <---------ZAT2--------->ALFIN1
--------->AGL1                    <---------TOE2(3)               <---------At4g35610  --------->ATHB12
-->ID1                            <---------TOE1(3)         <--------P       ----------->HVH21 -----
 
aatggttctgtttaagagaatgagaaaattgggatttgaggttgatgggtttacgttatcagggttgatagcagcttgttgtgaccgtgttgatttgata  18449300
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AGI:  At3g49710.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G68930.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74731.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64035.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 18448830    to: 18450995    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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