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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                --------->ZAT18
                                                                <---------ZAT18
---------ANAC58                                              <---------MYB46(3)
---------ANAC58                                             <---------AtMYB61           <---------ICU4
--ANAC46           <---------ANAC46                         --------->ALFIN1            --------->YAB1
--ANAC58    ---------->DOF2                         --------->ARR14(2)           --------->LBD16
--ANAC58----------->GT1--------->ALFIN1  <--------P <---------ARR14(2)    <----------DOF2          <
 
ttgcttaagagaggttaaagaagcgggtgtctcaataagttttggtaagtttgtgaatccccagtggtggactccatcttttcccgtcgaattataacat  18428200
                                     <---------ANAC46
                                <---------ICU4
                               <---------YAB1                       <---------TOE2(3)       <-------
                               --------->ICU4                       <---------YAB1       --------->ATHB51
                            <---------AHL20(2)          <----------DOF2                  <---------ICU4
                        --------->AHL20(2)           --------->ARR11(3)       <---------AtMYB61
     <-------TEIL    --------->WOX13(1)      --------->TOE2(3)      <---------TOE1(3)    <--------HAHB4
    <---------MYB52(1)  <---------AHL20(2)   <----------DOF2     <---------AHL20(2)     --------->ICU4
------ZmHOX2a(1)  --------->TOE2(3)  ----------->GT1 <---------ARR11(3)     <----------DOF2<--------
 
caggaccgttcatttcaacatcatcaattaattcattatggggtttatctttaaaacatctttttgaatttatggttcgctttggtattgcattattaca  18428300
                                            --------->bZIP60(1)
                                            <---------bZIP60(1)
                                       --------->ANAC55(2)
                                       ----------->GT1
                                       <---------ANAC55(2)                       <---------TOE2(3) <
                                       <------MYB46(1)                          <-----------GT1    -
                                       <------MYB83                        --------->AHL20(2)      -
                                 --------->ICU4  <---------ANAC55(2)       <---------AHL20(2)     <-
                  --------->ALFIN1    --------->MYB46(2)                   --------->AHL20(1)     --
                  <-----------RAV1(1) --------->MYB59                ===============================
----GT1        --------->DAG2    <---------YAB1  --------->ANAC55(2) ----------------->AGL3    -----
-YAB1         ---------->DOF2  <-----------------AGL1      <----------ID1 --------->AHL20(2) -------
 
cttgtatacctgtgtaataaagtgttggattttgtcaagattaggtaacatcacgtttcaaaacaacaaggctccaaattaattaacattttcttcatgt  18428400
                                                      <-------TEIL
                                                    ------->MYC3
                                                    <-------MYC3                <-----------GT1
 <---------TOE2(3)                                  ------->MYC2              <---------AHL20(2)
<-----------GT1                                     <-------MYC2         <<<<<<<<<MYB98
---------ICU4                                    --------->AtMYB61      ----------->GT1
------->HAHB4                                    <---------ALFIN1  ----------->TBP
-------->YAB1                                   --------->ANAC46 <---------------AGL15
--------YAB1                                  --------->ANAC46   --------------->AGL15
------->ICU4                             <---------AHL20(2)     ====================================
=================================================================================MADS_MADS        --
---->AHL20(2)                           --------->AHL20(2)      ----------------->AGL3            <-
-->ANAC55(2)        <----------DOF2   --------->TOE2(3)         <-----------------AGL2<----------DOF2
 
aattatcgtttttgaatcccttcctttctaattccatgtttcattaaatccaccacatgcatatgtttctatatatgttaaataaacgacttttcaagtt  18428500
                                                                                              <-----
                                                                                         --------->YAB1
                                                                                       --------->AHL20(2)
                                                                 --------->AHL20(2)    --------->AHL20(1)
                                                               --------->ANAC46       --------->YAB1
                                                    --------->ARR11(3)              --------->AHL20(2)
            <---------------AGL15                   <-----------ARR10         --------->AHL20(2)
            --------------->AGL15                   <---------ARR11(3)        <---------AHL20(2)
============================MADS_MADS               *TSS       --------->ANAC58    --------->YAB1
------->AHL20(2)                      ---------->DOF2          --------->ANAC58   --------->AHL20(2)
--------AHL20(2)          <---------AHL20(2)       --------->RVE1(1)          --------->AHL20(1) <--
 
tttaatttgtgttttctattttcagaaaatttatgtgaaatcaaagtttcttaaaaatctccctccaagtaaattccaaaataaaataaaaataatactt  18428600
                                                                                    >>>>>>>>>MYB98
                                                                                --------->TOE1(3)
                                           <---------At4g35610               ------>MYB46(1)
                                      --------->YAB1                         ------>MYB83      -----
                                --------->ANAC46                           --------->AtMYB61  ------
-----DOF2                       --------->ANAC58                 <----------DOF2--------->TOE2(3)
---------GT1                    --------->ANAC58 ------>ZmHOX2a(1)         <---------MYB59 ---------
 
ttacaatatacaaataaaactcataaaaaacacacacacaatcttcatcttcctcacttactctcaccctttttaaaaccaaaccctaacttacacagaa  18428700
                                                                                                <---
                                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ------
                                                    ------>ZmHOX2a(1)                         <-----
                                                 ------>ZmHOX2a(1)                            <-----
                                           ------>ZmHOX2a(1)<---------ALFIN1                 ------>MYB83
 ------------------------>ANAC81<<<<<<<<<TBF1   <---------ALFIN1                             ------>MYB46(1)
 ----------->GT1          --------->HSFC1(2)  ------>ZmHOX2a(1)                             --------
------------------->ANAC81<---------HSFC1(2) <---------ALFIN1                    <-----------HVH21
---->DOF2         --------->AHL20(2)      <---------ALFIN1------>ZmHOX2a(1)     --------->DEAR3(1)
>ANAC46 <----------ID1   ------->TEIL   ------>ZmHOX2a(1)--------->ANAC46     <---------At5g28300 --
 
agagaagaaaaaaaacaaaaaaaaaatgaagcttcttcttctcctcctcctcctccttctcctccacatttctcattccttcaccgtcgctaaaccaatc  18428800
       --------->ANAC58
       --------->ANAC58
       --------->ANAC46
     <---------ALFIN1
 --------->ZAT2                                                --------->bZIP60(1)
 --------->At4g35610                                        ----------->HVH21
 <---------ZAT2                                             ------>ZmHOX2a(1)
 --------->GLK1(1)                --------->REM1(1)       ----------->RAV1(2)
------At5g28300                 ------>ZmHOX2a(1)         <---------At4g35610        <----------DOF2
--->MYB46(3)                 ------>ZmHOX2a(1)            --------->At4g35610        ===============
----MYB55(2)             <---------ARR14(2)        <---------ALFIN1              --------->MYB46(3)
----ATHB12               --------->ARR14(2)      --------->ANAC58        --------->HSFB2a(1)      --
->WOX13(1)          --------->ANAC58             --------->ANAC58        <---------HSFB2a(1) <------
------->DEAR3(1)    --------->ANAC58           --------->ZAT6  <---------bZIP60(1)   ===============
 
accgagctccacgctcttctctcactcaaatcctccttcaccatcgacgaacactcacctctcctgacctcatggaacctttcaacaactttctgttcat  18428900
               <---------bZIP60(1)
               <---------bZIP60(2)
               --------->bZIP60(2)
               --------->bZIP60(1)
               --------->TGA1a
               =========================bZIP_bZIP
               <---------TGA1a
               <---------O2
               --------->O2
            ----------->HVH21
           --------->SPL7       ----------->HVH21
         <-------PIF5          <-----------HVH21
         ------->MYC2          <-------MYC3
         ------->PIF5          ------->MYC3
         <-------MYC2         --------->ANAC58
         --------->TOE1(2)    --------->ANAC46
         ------->PIF4         <---------bZIP60(2)
         <-------MYC3         <---------ANAC55(2)
         <-------PIF4         --------->TGA1a
         ------->MYC3         --------->ANAC55(2)
         <-------MYC4         --------->ANAC58
        <---------ANAC46      <---------ANAC46
        <---------ANAC58      <---------bZIP60(1)
        <---------ANAC55(2)   <---------ANAC58
        <---------ANAC58      <---------TGA1a
        --------->ANAC55(2)   --------->bZIP60(1)                                   --------->TGA1a
        <---------O2          --------->bZIP60(2)                                   --------->O2
        --------->O2          <---------ANAC58                                      <---------TGA1a
        --------->TGA1a       <---------O2                                       ----------->HVH21
        <---------bZIP60(2)   --------->O2                            --------->GLK1(1)
        <---------TGA1a     ------------->DYT1                        <---------GLK1(1)
     ----------->HVH21      <-------------DYT1                     --------->LBD16  <---------O2
    <-----------HVH21      ----------->HVH21                      <---------HSFB2a(2)
   ----------->HVH21       <---------MYB52(1)                     --------->ANAC46------>NtERF2
==================bZIP_DOF<-----------TGA1                        --------->HSFB2a(2)   <---------At4g35610
----->TEIL--------->ALFIN1<-----------HVH21        <---------TOE1(2) --------->ARR14(2)------->TEIL
---AtLEC2------->MYC4    --------->ANAC46       <-----------HVH21<---------LBD16 --------->DEAR3(1)
=========================bZIP_DOF         <---------ETT(2)<-----------GT1      ------>ZmHOX2a(1)
 
ggaccggtgtcacgtgcgacgtctctctccgtcacgtgacctctctcgacctctcaggtcttaacctctccggaactctctcctccgacgtagctcattt  18429000
                                                         <---------ARR14(2)
                                                         --------->ARR14(2)
                                                        <---------CCA1(2)
                                                     ------>NtERF2
                                      <---------TOE1(2) --------->GLK1(1)
                                   ------>ZmHOX2a(2) <------NtERF2
                                   ================HOX2a_HOX2a
                                  --------->GLK1(1)  --------->LBD16
                                  <------ZmHOX2a(2) --------->RRTF1(2)
                                  =================HOX2a_HOX2a
                                  <---------GLK1(1) --------->RAP2.6(2)
                                 --------->AGP1     --------->RAP2.3(3)
                                 <---------ARR14(2) --------->RAP2.3(2)
                                 <-----------ARR10------>NtERF2
                                 --------->ARR11(3) --------->RRTF1(3)
                                 <---------AGP1   --------->LBD16                   --------->TOE2(3)
                --------->ZAT6   <---------ARR11(3) --------->DEAR3(1)             <---------At4g35610
             --------->WOX13(1)  --------->ARR14(2)--------->RAP2.3(1)             --------->At4g35610
          --------->GLK1(2)     <---------CCA1(2)--------->ANAC46              <-----------HVH21   <
         <---------GLK1(2)      --------->At4g35610--------->RRTF1(1)          <-----------TGA1    -
  --------->At4g35610         --------->YAB1    <---------LBD16              <-------TEIL         <-
  <---------At4g35610   <---------At4g35610 ------>ZmHOX2a(1)             --------->At4g35610     <-
 
acctctgctacagaatctatcactcgctgctaatcagatctcaggtcctattccgccgcaaatctccaatctctatgagcttcgtcacctcaatctctcc  18429100
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AGI:  At3g49668.1   
Description:  other RNA
Range:  from: 18428550    to: 18429263    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At3g49670.1   
Description:  BAM2 (big apical meristem 2); ATP binding / protein serine/threonine kinase. similar to BAM1 (big apical meristem 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G65700.1); similar to CLV1 (CLAVATA 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G75820.1); similar to BAM3 (big apical meristem 3), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G20270.1); similar to receptor-like protein kinase 2 [Glycine max] (GB:AAF91323.1); similar to receptor-like protein kinase 1 [Glycine max] (GB:AAF91322.1); similar to receptor-like protein
Range:  from: 18428553    to: 18432091    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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